Wall clock time and date at job start Tue Mar 31 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48500 * 109.46946 * 90.00383 * 3 2 1 5 5 H 1.48503 * 109.46989 * 209.99931 * 3 2 1 6 6 H 1.48502 * 109.47269 * 330.00075 * 3 2 1 7 7 C 1.37878 * 119.99559 * 180.27798 * 2 1 3 8 8 H 1.08007 * 119.99659 * 179.72669 * 7 2 1 9 9 C 1.50699 * 120.00382 * 359.72364 * 7 2 1 10 10 N 1.46496 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.97806 * 124.71319 * 10 9 7 12 12 C 1.35237 * 107.86824 * 179.83958 * 11 10 9 13 13 C 1.40432 * 107.86445 * 0.42166 * 12 11 10 14 14 N 1.40061 * 125.97491 * 179.70197 * 13 12 11 15 15 C 1.34780 * 120.00415 * 0.02562 * 14 13 12 16 16 O 1.21591 * 119.99376 * 359.97438 * 15 14 13 17 17 C 1.47661 * 120.00043 * 180.02562 * 15 14 13 18 18 C 1.38791 * 120.44194 * 56.00690 * 17 15 14 19 19 C 1.38956 * 120.58118 * 179.78480 * 18 17 15 20 20 C 1.36359 * 121.20102 * 0.47501 * 19 18 17 21 21 C 1.40377 * 120.02058 * 359.78528 * 20 19 18 22 22 N 1.34066 * 121.87293 * 179.97438 * 21 20 19 23 23 C 1.31161 * 120.43250 * 179.97438 * 22 21 20 24 24 N 1.32385 * 122.91437 * 0.04241 * 23 22 21 25 25 C 1.32405 * 121.46063 * 359.97438 * 24 23 22 26 26 O 1.35313 * 120.88703 * 179.97438 * 25 24 23 27 27 C 1.41179 * 120.43527 * 236.28373 * 17 15 14 28 28 N 1.31234 * 108.04945 * 359.74089 * 13 12 11 29 29 H 0.96998 * 120.00062 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46978 * 300.00291 * 9 7 2 31 31 H 1.09003 * 109.47054 * 59.99925 * 9 7 2 32 32 H 1.07996 * 126.06741 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06995 * 180.16054 * 12 11 10 34 34 H 0.97005 * 119.99745 * 180.02562 * 14 13 12 35 35 H 1.08004 * 119.71067 * 0.02603 * 18 17 15 36 36 H 1.07999 * 119.39883 * 180.23866 * 19 18 17 37 37 H 1.07995 * 119.98888 * 179.76028 * 20 19 18 38 38 H 1.07996 * 118.53906 * 180.02562 * 23 22 21 39 39 H 0.96700 * 114.00075 * 275.17227 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0058 8 1 3.0846 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2029 -3.6127 -0.0119 11 6 2.2487 -4.6216 0.8835 12 6 3.2623 -5.4442 0.5302 13 6 3.8667 -4.9135 -0.6209 14 7 4.9598 -5.4619 -1.3036 15 6 5.5260 -6.6029 -0.8631 16 8 5.0881 -7.1558 0.1273 17 6 6.6788 -7.1807 -1.5826 18 6 7.8238 -6.4262 -1.7971 19 6 8.9120 -6.9685 -2.4699 20 6 8.8837 -8.2465 -2.9446 21 6 7.7427 -9.0415 -2.7535 22 7 7.6745 -10.3021 -3.2049 23 6 6.5942 -11.0200 -3.0101 24 7 5.5293 -10.5589 -2.3729 25 6 5.4936 -9.3274 -1.8879 26 8 4.3987 -8.8679 -1.2390 27 6 6.6286 -8.5060 -2.0665 28 7 3.2286 -3.8133 -0.9447 29 1 -0.4850 -0.8400 0.0004 30 1 0.6280 -2.5591 0.8867 31 1 0.6206 -2.5547 -0.8933 32 1 1.5907 -4.7508 1.7300 33 1 3.5576 -6.3467 1.0448 34 1 5.3093 -5.0204 -2.0935 35 1 7.8709 -5.4099 -1.4345 36 1 9.7949 -6.3655 -2.6229 37 1 9.7391 -8.6469 -3.4682 38 1 6.5725 -12.0320 -3.3863 39 1 3.7147 -8.5139 -1.8236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565865003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:27 Heat of formation + Delta-G solvation = 89.151414 kcal Electronic energy + Delta-G solvation = -27846.760274 eV Core-core repulsion = 23757.484960 eV Total energy + Delta-G solvation = -4089.275314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00642 -40.79885 -39.47467 -38.38043 -37.43431 -34.94670 -33.82759 -33.54176 -32.02643 -31.17212 -30.42631 -29.46068 -26.53963 -25.49233 -24.79274 -24.14904 -22.95639 -21.62044 -20.62797 -20.04539 -19.44678 -18.81118 -18.22580 -17.24388 -17.13270 -16.73050 -16.54539 -15.84987 -15.54431 -15.20078 -15.09730 -14.72541 -14.28775 -14.20786 -13.94914 -13.82017 -13.26397 -13.07648 -12.71952 -12.68682 -12.52525 -12.38971 -12.14489 -11.89392 -11.23191 -11.18365 -11.04572 -10.83576 -10.51477 -10.21737 -10.21034 -9.88531 -9.85099 -9.60892 -9.06154 -8.82897 -8.62495 -8.29934 -7.62061 -6.62848 -4.37278 -0.44743 0.19378 1.09683 2.12086 2.36669 2.59220 2.77076 2.94804 3.33340 3.37082 3.48279 3.52790 3.56324 3.60224 3.63511 3.86286 4.11653 4.28193 4.35857 4.38317 4.62924 4.76340 4.91320 5.07213 5.11211 5.30398 5.38484 5.48268 5.62234 5.70658 5.73766 6.04189 6.06277 6.32660 6.41849 6.51657 6.52762 6.68711 7.03921 7.20264 7.37531 7.63039 7.64318 7.75566 8.04079 8.28846 8.45242 8.56312 9.31018 10.74849 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002480 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454965 B =11286.867381 C =12228.309952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.257 3.743 14 N -0.625 5.625 15 C 0.558 3.442 16 O -0.472 6.472 17 C -0.068 4.068 18 C -0.086 4.086 19 C -0.077 4.077 20 C -0.087 4.087 21 C 0.171 3.829 22 N -0.515 5.515 23 C 0.326 3.674 24 N -0.549 5.549 25 C 0.418 3.582 26 O -0.444 6.444 27 C -0.147 4.147 28 N -0.299 5.299 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.411 0.589 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.203 0.797 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -17.554 -6.820 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.314 4.314 13 C 0.004 3.996 14 N -0.273 5.273 15 C 0.342 3.658 16 O -0.343 6.343 17 C -0.075 4.075 18 C -0.105 4.105 19 C -0.098 4.098 20 C -0.106 4.106 21 C 0.044 3.956 22 N -0.230 5.230 23 C 0.037 3.963 24 N -0.275 5.275 25 C 0.218 3.782 26 O -0.252 6.252 27 C -0.153 4.153 28 N -0.130 5.130 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.185 0.815 33 H 0.180 0.820 34 H 0.247 0.753 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.219 0.781 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 15.640 -16.315 -6.786 23.598 hybrid contribution 0.034 -1.174 0.226 1.196 sum 15.674 -17.490 -6.561 24.384 Atomic orbital electron populations 1.70826 1.06791 1.30484 1.45897 1.25930 0.96311 1.02834 0.93114 0.83385 0.74681 0.74329 0.76989 1.21187 1.21239 1.20689 1.22120 0.95387 0.90392 1.56763 0.91797 1.19782 0.86298 0.82822 0.98038 1.48814 1.23283 1.19508 1.18137 1.22586 1.00484 0.90076 0.96675 1.21555 1.02110 1.06312 1.01432 1.19041 0.91486 0.94343 0.94768 1.42371 1.30077 1.24571 1.30326 1.17911 0.82762 0.80077 0.85056 1.90822 1.60469 1.58964 1.24029 1.19669 0.95718 0.93124 0.98946 1.21542 0.92062 1.00280 0.96614 1.21044 0.98510 0.95054 0.95156 1.20936 0.96843 0.93263 0.99541 1.18834 0.92714 0.90811 0.93224 1.68799 1.26875 1.05220 1.22134 1.24781 0.82352 0.99717 0.89490 1.68070 1.31357 1.15077 1.13009 1.19794 0.87624 0.87026 0.83760 1.84964 1.27530 1.79792 1.32874 1.19381 0.97503 0.94984 1.03455 1.77374 1.03494 1.16048 1.16107 0.92222 0.93581 0.94727 0.81455 0.81961 0.75310 0.83814 0.83703 0.83467 0.78099 0.73059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 13.65 55.43 0.76 -25.15 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.46 29.90 -169.99 -5.08 19.38 16 4 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.61 -16.70 9.24 -34.44 -0.32 -17.02 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.25 6.11 5.57 -5.20 -0.03 6.08 16 10 N -0.32 -7.06 3.67 -62.56 -0.23 -7.29 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.23 9.60 -39.82 -0.38 -5.61 16 13 C 0.26 4.74 8.10 -154.46 -1.25 3.49 16 14 N -0.63 -8.67 5.43 -12.04 -0.07 -8.74 16 15 C 0.56 7.45 5.93 -12.41 -0.07 7.38 16 16 O -0.47 -7.77 11.74 -18.82 -0.22 -8.00 16 17 C -0.07 -0.74 5.66 -104.73 -0.59 -1.33 16 18 C -0.09 -0.68 9.75 -39.11 -0.38 -1.06 16 19 C -0.08 -0.46 9.93 -39.99 -0.40 -0.86 16 20 C -0.09 -0.64 9.99 -39.45 -0.39 -1.04 16 21 C 0.17 1.76 6.61 -84.88 -0.56 1.19 16 22 N -0.51 -5.30 10.44 -12.66 -0.13 -5.43 16 23 C 0.33 3.10 12.22 -92.18 -1.13 1.98 16 24 N -0.55 -6.37 10.42 -14.30 -0.15 -6.52 16 25 C 0.42 5.08 7.83 -16.17 -0.13 4.95 16 26 O -0.44 -5.52 9.42 -41.74 -0.39 -5.91 16 27 C -0.15 -1.66 5.78 -106.43 -0.61 -2.28 16 28 N -0.30 -6.54 12.42 31.43 0.39 -6.15 16 29 H 0.27 7.48 7.22 -40.82 -0.29 7.18 16 30 H 0.05 1.10 7.94 -51.92 -0.41 0.68 16 31 H 0.03 0.89 8.00 -51.93 -0.42 0.47 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.18 16 33 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 34 H 0.41 4.66 8.81 -40.82 -0.36 4.30 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.41 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -35.39 346.57 -9.15 -44.54 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -2.70 Total: 6.84 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -6.54 Total: -2.81 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.57 Total: -59.27 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.61 Total: -13.91 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.39 -9.15 -44.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565865003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.689 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds