Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48500 * 109.46946 * 90.00383 * 3 2 1 5 5 H 1.48503 * 109.46989 * 209.99931 * 3 2 1 6 6 H 1.48502 * 109.47269 * 330.00075 * 3 2 1 7 7 C 1.37878 * 119.99559 * 180.27798 * 2 1 3 8 8 H 1.08007 * 119.99659 * 179.72669 * 7 2 1 9 9 C 1.50699 * 120.00382 * 359.72364 * 7 2 1 10 10 N 1.46496 * 109.47496 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.97806 * 124.71319 * 10 9 7 12 12 C 1.35237 * 107.86824 * 179.83958 * 11 10 9 13 13 C 1.40432 * 107.86445 * 0.42166 * 12 11 10 14 14 N 1.40061 * 125.97491 * 179.70197 * 13 12 11 15 15 C 1.34780 * 120.00415 * 0.02562 * 14 13 12 16 16 O 1.21591 * 119.99376 * 359.97438 * 15 14 13 17 17 C 1.47661 * 120.00043 * 180.02562 * 15 14 13 18 18 C 1.38791 * 120.44194 * 56.00690 * 17 15 14 19 19 C 1.38956 * 120.58118 * 179.78480 * 18 17 15 20 20 C 1.36359 * 121.20102 * 0.47501 * 19 18 17 21 21 C 1.40377 * 120.02058 * 359.78528 * 20 19 18 22 22 N 1.34066 * 121.87293 * 179.97438 * 21 20 19 23 23 C 1.31161 * 120.43250 * 179.97438 * 22 21 20 24 24 N 1.32385 * 122.91437 * 0.04241 * 23 22 21 25 25 C 1.32405 * 121.46063 * 359.97438 * 24 23 22 26 26 O 1.35313 * 120.88703 * 179.97438 * 25 24 23 27 27 C 1.41179 * 120.43527 * 236.28373 * 17 15 14 28 28 N 1.31234 * 108.04945 * 359.74089 * 13 12 11 29 29 H 0.96998 * 120.00062 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46978 * 300.00291 * 9 7 2 31 31 H 1.09003 * 109.47054 * 59.99925 * 9 7 2 32 32 H 1.07996 * 126.06741 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06995 * 180.16054 * 12 11 10 34 34 H 0.97005 * 119.99745 * 180.02562 * 14 13 12 35 35 H 1.08004 * 119.71067 * 0.02603 * 18 17 15 36 36 H 1.07999 * 119.39883 * 180.23866 * 19 18 17 37 37 H 1.07995 * 119.98888 * 179.76028 * 20 19 18 38 38 H 1.07996 * 118.53906 * 180.02562 * 23 22 21 39 39 H 0.96700 * 114.00075 * 275.17227 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0058 8 1 3.0846 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 7 2.2029 -3.6127 -0.0119 11 6 2.2487 -4.6216 0.8835 12 6 3.2623 -5.4442 0.5302 13 6 3.8667 -4.9135 -0.6209 14 7 4.9598 -5.4619 -1.3036 15 6 5.5260 -6.6029 -0.8631 16 8 5.0881 -7.1558 0.1273 17 6 6.6788 -7.1807 -1.5826 18 6 7.8238 -6.4262 -1.7971 19 6 8.9120 -6.9685 -2.4699 20 6 8.8837 -8.2465 -2.9446 21 6 7.7427 -9.0415 -2.7535 22 7 7.6745 -10.3021 -3.2049 23 6 6.5942 -11.0200 -3.0101 24 7 5.5293 -10.5589 -2.3729 25 6 5.4936 -9.3274 -1.8879 26 8 4.3987 -8.8679 -1.2390 27 6 6.6286 -8.5060 -2.0665 28 7 3.2286 -3.8133 -0.9447 29 1 -0.4850 -0.8400 0.0004 30 1 0.6280 -2.5591 0.8867 31 1 0.6206 -2.5547 -0.8933 32 1 1.5907 -4.7508 1.7300 33 1 3.5576 -6.3467 1.0448 34 1 5.3093 -5.0204 -2.0935 35 1 7.8709 -5.4099 -1.4345 36 1 9.7949 -6.3655 -2.6229 37 1 9.7391 -8.6469 -3.4682 38 1 6.5725 -12.0320 -3.3863 39 1 3.7147 -8.5139 -1.8236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565865003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = 63.885215 kcal Electronic energy + Delta-G solvation = -27847.855899 eV Core-core repulsion = 23757.484960 eV Total energy + Delta-G solvation = -4090.370939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81180 -42.21153 -40.62997 -39.16023 -38.25901 -36.42270 -35.54310 -34.41883 -32.94911 -32.47973 -31.38440 -30.99524 -28.27546 -26.37399 -25.64374 -25.24777 -24.54729 -22.80391 -22.01364 -21.22430 -20.35117 -19.71234 -19.23361 -18.96436 -18.34508 -17.80258 -17.50458 -17.00350 -16.53748 -16.31213 -16.13815 -15.74512 -15.63358 -15.38802 -15.20374 -14.98656 -14.91367 -14.16561 -13.92548 -13.75894 -13.71370 -13.37705 -13.33022 -13.20398 -12.97446 -12.60251 -12.07630 -11.97155 -11.96437 -11.77424 -11.65605 -11.08497 -11.00102 -10.68670 -10.53460 -10.44521 -9.84523 -9.54394 -9.21730 -8.77417 -6.55699 -1.18031 -0.49535 0.30484 0.88329 1.23582 1.37675 1.51499 1.58883 1.75737 1.78756 2.11583 2.18742 2.22427 2.49116 2.78450 3.00805 3.01637 3.10946 3.28671 3.49840 3.68189 3.87632 4.02518 4.10525 4.14042 4.30427 4.41148 4.56054 4.69575 4.74271 4.79075 4.83536 4.89505 5.05467 5.10808 5.13727 5.46910 5.55451 5.77703 5.80373 5.92431 6.14065 6.26094 6.26762 6.41315 6.88270 6.89525 6.99662 7.20197 8.58844 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002480 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.454965 B =11286.867381 C =12228.309952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.020 4.020 3 Si 1.122 2.878 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.620 4.620 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.343 5.343 11 C 0.054 3.946 12 C -0.285 4.285 13 C 0.272 3.728 14 N -0.616 5.616 15 C 0.568 3.432 16 O -0.505 6.505 17 C -0.094 4.094 18 C -0.068 4.068 19 C -0.063 4.063 20 C -0.081 4.081 21 C 0.154 3.846 22 N -0.519 5.519 23 C 0.317 3.683 24 N -0.566 5.566 25 C 0.397 3.603 26 O -0.462 6.462 27 C -0.157 4.157 28 N -0.341 5.341 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.017 0.983 32 H 0.199 0.801 33 H 0.169 0.831 34 H 0.424 0.576 35 H 0.163 0.837 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.234 0.766 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.973 -17.527 -7.357 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.658 4.658 8 H 0.065 0.935 9 C 0.140 3.860 10 N -0.124 5.124 11 C -0.094 4.094 12 C -0.316 4.316 13 C 0.017 3.983 14 N -0.266 5.266 15 C 0.355 3.645 16 O -0.377 6.377 17 C -0.100 4.100 18 C -0.086 4.086 19 C -0.083 4.083 20 C -0.099 4.099 21 C 0.026 3.974 22 N -0.234 5.234 23 C 0.029 3.971 24 N -0.292 5.292 25 C 0.197 3.803 26 O -0.270 6.270 27 C -0.164 4.164 28 N -0.172 5.172 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.215 0.785 33 H 0.186 0.814 34 H 0.262 0.738 35 H 0.181 0.819 36 H 0.206 0.794 37 H 0.190 0.810 38 H 0.250 0.750 39 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 18.642 -16.326 -7.339 25.844 hybrid contribution -0.753 -1.333 0.346 1.570 sum 17.889 -17.659 -6.993 26.092 Atomic orbital electron populations 1.70921 1.07507 1.30219 1.47443 1.27278 0.96426 1.06121 0.92108 0.82850 0.73929 0.70958 0.77987 1.19462 1.20282 1.20200 1.22303 0.94716 0.92040 1.56715 0.93514 1.19419 0.86431 0.82840 0.97325 1.48566 1.24061 1.20115 1.19695 1.23164 1.00717 0.88858 0.96653 1.21708 1.02019 1.06344 1.01547 1.19319 0.91533 0.93056 0.94405 1.42449 1.28857 1.24810 1.30447 1.18314 0.82769 0.79028 0.84426 1.90791 1.61688 1.59604 1.25641 1.19398 0.95761 0.93471 1.01373 1.21914 0.91191 1.00681 0.94814 1.21482 0.98971 0.94745 0.93126 1.21335 0.96361 0.93401 0.98832 1.19278 0.93391 0.91250 0.93434 1.68859 1.26984 1.05392 1.22144 1.25428 0.81761 1.00889 0.89060 1.68075 1.32450 1.15131 1.13585 1.19997 0.87938 0.87677 0.84669 1.84927 1.28174 1.80031 1.33891 1.19447 0.97649 0.95160 1.04113 1.77293 1.04625 1.18030 1.17257 0.92944 0.92974 0.96527 0.78451 0.81358 0.73813 0.81929 0.79426 0.80997 0.74962 0.72193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.43 13.65 21.45 0.29 -53.14 16 2 C -0.02 -1.09 5.46 84.65 0.46 -0.62 16 3 Si 1.12 48.78 29.90 68.60 2.05 50.83 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.62 -34.55 9.24 25.60 0.24 -34.31 16 8 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.05 5.57 85.63 0.48 13.53 16 10 N -0.34 -15.56 3.67 -351.85 -1.29 -16.85 16 11 C 0.05 2.05 11.43 83.52 0.95 3.01 16 12 C -0.29 -10.52 9.60 22.11 0.21 -10.31 16 13 C 0.27 10.04 8.10 133.36 1.08 11.13 16 14 N -0.62 -16.75 5.43 -310.28 -1.69 -18.44 16 15 C 0.57 14.91 5.93 86.73 0.51 15.42 16 16 O -0.50 -16.69 11.74 19.05 0.22 -16.47 16 17 C -0.09 -1.90 5.66 -19.93 -0.11 -2.01 16 18 C -0.07 -0.84 9.75 22.57 0.22 -0.62 16 19 C -0.06 -0.48 9.93 22.00 0.22 -0.26 16 20 C -0.08 -0.90 9.99 22.35 0.22 -0.68 16 21 C 0.15 2.88 6.61 40.11 0.27 3.14 16 22 N -0.52 -9.90 10.44 -193.96 -2.03 -11.92 16 23 C 0.32 5.79 12.22 180.89 2.21 8.00 16 24 N -0.57 -13.23 10.42 -312.13 -3.25 -16.48 16 25 C 0.40 9.82 7.83 85.34 0.67 10.49 16 26 O -0.46 -11.99 9.42 -62.95 -0.59 -12.58 16 27 C -0.16 -3.45 5.78 -21.04 -0.12 -3.58 16 28 N -0.34 -15.12 12.42 -54.49 -0.68 -15.80 16 29 H 0.26 14.92 7.22 -92.71 -0.67 14.25 16 30 H 0.05 2.53 7.94 -2.38 -0.02 2.51 16 31 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.20 5.97 8.06 -2.91 -0.02 5.94 16 33 H 0.17 6.07 5.91 -2.91 -0.02 6.05 16 34 H 0.42 9.21 8.81 -92.70 -0.82 8.40 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 37 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.23 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.42 8.05 9.06 -74.06 -0.67 7.38 16 Total: -1.00 -78.27 346.57 0.32 -77.95 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.23 Total: 20.57 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.51 Total: 12.33 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -8.64 Total: -132.64 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.37 Total: -29.05 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Total: -78.27 0.32 -77.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565865003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.836 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds