Wall clock time and date at job start Tue Mar 31 2020 23:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47663 * 305.00398 * 3 2 1 5 5 C 1.53003 * 109.46886 * 184.99795 * 3 2 1 6 6 N 1.46505 * 109.46861 * 185.00101 * 5 3 2 7 7 C 1.34773 * 119.99862 * 179.97438 * 6 5 3 8 8 O 1.21362 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.49345 * 120.00092 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99858 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00253 * 180.02562 * 9 7 6 12 12 C 1.39765 * 120.00073 * 175.38060 * 11 9 7 13 13 C 1.38925 * 120.06088 * 214.81841 * 12 11 9 14 14 C 1.38088 * 119.93214 * 179.76687 * 13 12 11 15 15 C 1.38396 * 120.06667 * 0.48558 * 14 13 12 16 16 Cl 1.73601 * 119.94088 * 179.74519 * 15 14 13 17 17 C 1.38402 * 120.12660 * 359.76994 * 15 14 13 18 18 C 1.38094 * 120.05855 * 359.97438 * 17 15 14 19 19 N 1.46505 * 109.46830 * 65.00572 * 3 2 1 20 20 C 1.36936 * 119.99814 * 274.99883 * 19 3 2 21 21 H 1.08004 * 119.99697 * 359.97438 * 20 19 3 22 22 C 1.38807 * 119.99932 * 180.02562 * 20 19 3 23 23 N 1.31618 * 120.00277 * 359.72339 * 22 20 19 24 24 Si 1.86808 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46807 * 179.72539 * 24 22 20 26 26 H 1.48497 * 109.47268 * 299.72260 * 24 22 20 27 27 H 1.48501 * 109.47127 * 59.72852 * 24 22 20 28 28 H 1.08994 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46855 * 299.99538 * 1 2 3 30 30 H 1.09005 * 109.47096 * 59.99477 * 1 2 3 31 31 H 1.09000 * 109.46855 * 240.00462 * 2 1 3 32 32 H 1.08998 * 109.47111 * 120.00918 * 2 1 3 33 33 H 1.08995 * 109.47460 * 305.00413 * 5 3 2 34 34 H 1.08997 * 109.46758 * 65.00644 * 5 3 2 35 35 H 0.96993 * 119.99951 * 0.02562 * 6 5 3 36 36 H 0.97004 * 119.99823 * 355.37575 * 11 9 7 37 37 H 1.08001 * 120.03438 * 359.97438 * 13 12 11 38 38 H 1.08006 * 119.96398 * 180.23309 * 14 13 12 39 39 H 1.07991 * 119.97347 * 179.97438 * 17 15 14 40 40 H 1.08001 * 120.02691 * 179.97438 * 18 17 15 41 41 H 0.96995 * 120.00228 * 94.99796 * 19 3 2 42 42 H 0.97004 * 119.99418 * 0.27174 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1641 2.1476 -0.2572 9 6 5.8938 4.4619 0.0370 10 8 5.1155 5.3772 0.2091 11 7 7.2165 4.7081 -0.0433 12 6 7.6845 6.0249 -0.0255 13 6 8.7990 6.3775 -0.7763 14 6 9.2563 7.6804 -0.7605 15 6 8.6116 8.6322 0.0101 16 17 9.1933 10.2677 0.0327 17 6 7.5044 8.2826 0.7632 18 6 7.0394 6.9824 0.7472 19 7 1.6525 2.0974 1.2519 20 6 0.4157 2.6734 1.3690 21 1 -0.2739 2.6452 0.5383 22 6 0.0488 3.2943 2.5550 23 7 0.8875 3.3248 3.5688 24 14 -1.6382 4.0807 2.7144 25 1 -1.7852 4.6662 4.0712 26 1 -1.7839 5.1507 1.6951 27 1 -2.6866 3.0502 2.5038 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.9954 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4411 3.5482 0.1316 36 1 7.8435 3.9713 -0.1134 37 1 9.3051 5.6342 -1.3743 38 1 10.1204 7.9560 -1.3470 39 1 7.0035 9.0272 1.3640 40 1 6.1756 6.7100 1.3354 41 1 2.2720 2.1230 1.9978 42 1 1.7636 2.9167 3.4859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567967261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:30 Heat of formation + Delta-G solvation = -38.908602 kcal Electronic energy + Delta-G solvation = -26209.558721 eV Core-core repulsion = 22215.837802 eV Total energy + Delta-G solvation = -3993.720919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18677 -39.62101 -38.39377 -36.99636 -36.76971 -35.15859 -33.92810 -32.64901 -31.41645 -29.95568 -29.68406 -28.14255 -25.32619 -23.63638 -23.33912 -22.74878 -21.80540 -20.50009 -20.09050 -18.84209 -17.85335 -17.47597 -17.10801 -16.38126 -16.15186 -15.68733 -15.25925 -15.05301 -14.62854 -14.43252 -14.12146 -13.81405 -13.71318 -13.64937 -13.60920 -13.26991 -12.85433 -12.70556 -12.22397 -12.13377 -11.84891 -11.75227 -11.61661 -11.13008 -11.05164 -10.82520 -10.63927 -10.46525 -10.43807 -10.15377 -9.92866 -9.69157 -9.35758 -9.24633 -9.07490 -8.98396 -8.44478 -7.15199 -6.14901 -3.17418 0.62991 0.96819 1.41690 1.84976 2.20451 3.06768 3.36859 3.49055 3.51247 3.53566 3.69177 4.38367 4.48583 4.54508 4.61236 4.89832 5.01696 5.13678 5.16314 5.25640 5.47976 5.54360 5.65601 5.70080 5.78483 5.82683 5.87541 5.90820 5.93779 6.01531 6.21891 6.26343 6.41833 6.46263 6.49902 6.57954 6.78238 6.86395 7.16829 7.33226 7.63203 7.74598 7.98580 8.68599 9.11858 9.98938 10.12376 11.31987 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002465 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.207205 B =11354.958281 C =13178.621981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.058 0.942 5 C 0.110 3.890 6 N -0.674 5.674 7 C 0.506 3.494 8 O -0.532 6.532 9 C 0.508 3.492 10 O -0.486 6.486 11 N -0.650 5.650 12 C 0.150 3.850 13 C -0.130 4.130 14 C -0.092 4.092 15 C -0.050 4.050 16 Cl -0.073 7.073 17 C -0.089 4.089 18 C -0.108 4.108 19 N -0.732 5.732 20 C -0.331 4.331 21 H 0.068 0.932 22 C -0.041 4.041 23 N -0.939 5.939 24 Si 1.076 2.924 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.423 0.577 36 H 0.424 0.576 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.367 0.633 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.625 4.919 -9.688 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.014 4.014 6 N -0.327 5.327 7 C 0.285 3.715 8 O -0.410 6.410 9 C 0.290 3.710 10 O -0.358 6.358 11 N -0.297 5.297 12 C 0.055 3.945 13 C -0.151 4.151 14 C -0.111 4.111 15 C -0.077 4.077 16 Cl -0.044 7.044 17 C -0.108 4.108 18 C -0.128 4.128 19 N -0.376 5.376 20 C -0.461 4.461 21 H 0.086 0.914 22 C -0.239 4.239 23 N -0.584 5.584 24 Si 0.907 3.093 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.223 1.223 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.262 0.738 36 H 0.262 0.738 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.201 0.799 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.383 5.856 -8.829 18.678 hybrid contribution 1.246 -0.828 -0.843 1.718 sum 16.629 5.028 -9.673 19.884 Atomic orbital electron populations 1.21765 0.95424 0.99688 1.03480 1.22055 0.97296 0.97950 1.00027 1.20529 0.89215 0.93131 0.91419 0.92434 1.21929 0.96326 0.81295 1.01874 1.45855 1.06323 1.12061 1.68470 1.19691 0.84069 0.88248 0.79489 1.90750 1.55893 1.45299 1.49076 1.20515 0.82569 0.90430 0.77496 1.90831 1.55562 1.45506 1.43911 1.43144 1.07769 1.07227 1.71557 1.17833 0.95548 0.84478 0.96597 1.20880 0.97778 0.96571 0.99831 1.20813 1.00113 0.91522 0.98684 1.20951 0.98093 0.86324 1.02360 1.98370 1.88247 1.20030 1.97786 1.21017 0.94669 0.96642 0.98467 1.21386 1.01120 0.91989 0.98279 1.42457 1.16964 1.67052 1.11123 1.19965 0.92512 1.32595 1.01044 0.91381 1.25712 1.05709 1.00186 0.92298 1.70896 1.08358 1.47214 1.31944 0.83298 0.74257 0.75906 0.75882 1.21110 1.22217 1.22276 0.94798 0.89516 0.94035 0.93689 0.92602 0.91084 0.90885 0.73789 0.73776 0.84449 0.84445 0.84306 0.83039 0.79894 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 3 C 0.17 2.97 2.59 -67.93 -0.18 2.79 16 4 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 5 C 0.11 1.70 5.23 -4.04 -0.02 1.68 16 6 N -0.67 -10.81 5.38 -60.76 -0.33 -11.13 16 7 C 0.51 7.70 7.89 -11.64 -0.09 7.61 16 8 O -0.53 -8.54 16.48 5.49 0.09 -8.45 16 9 C 0.51 7.23 7.73 -11.63 -0.09 7.14 16 10 O -0.49 -8.12 13.91 5.48 0.08 -8.04 16 11 N -0.65 -7.25 5.32 -10.29 -0.05 -7.30 16 12 C 0.15 1.64 6.30 -83.73 -0.53 1.11 16 13 C -0.13 -1.11 9.97 -39.38 -0.39 -1.51 16 14 C -0.09 -0.77 9.82 -39.58 -0.39 -1.16 16 15 C -0.05 -0.48 6.32 -39.46 -0.25 -0.73 16 16 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.17 16 17 C -0.09 -0.93 9.82 -39.57 -0.39 -1.32 16 18 C -0.11 -1.29 8.69 -39.38 -0.34 -1.63 16 19 N -0.73 -16.28 4.50 -53.42 -0.24 -16.52 16 20 C -0.33 -8.40 7.75 -15.06 -0.12 -8.52 16 21 H 0.07 1.71 7.32 -52.48 -0.38 1.33 16 22 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 23 N -0.94 -27.76 13.70 55.49 0.76 -27.00 16 24 Si 1.08 25.00 29.92 -169.99 -5.09 19.91 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.82 5.99 -51.93 -0.31 1.51 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.42 7.46 7.61 -40.82 -0.31 7.15 16 36 H 0.42 3.85 8.30 -40.82 -0.34 3.51 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.15 2.07 6.22 -52.49 -0.33 1.74 16 41 H 0.37 8.71 6.63 -40.82 -0.27 8.44 16 42 H 0.25 7.43 6.77 -40.82 -0.28 7.15 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -30.04 371.84 -8.61 -38.64 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -5.24 Total: 16.74 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.69 Total: -0.28 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.14 Total: -61.96 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.17 Total: -16.50 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.91 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.04 -8.61 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567967261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.264 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds