Wall clock time and date at job start Tue Mar 31 2020 23:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47663 * 305.00398 * 3 2 1 5 5 C 1.53003 * 109.46886 * 184.99795 * 3 2 1 6 6 N 1.46505 * 109.46861 * 185.00101 * 5 3 2 7 7 C 1.34773 * 119.99862 * 179.97438 * 6 5 3 8 8 O 1.21362 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.49345 * 120.00092 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99858 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00253 * 180.02562 * 9 7 6 12 12 C 1.39765 * 120.00073 * 175.38060 * 11 9 7 13 13 C 1.38925 * 120.06088 * 214.81841 * 12 11 9 14 14 C 1.38088 * 119.93214 * 179.76687 * 13 12 11 15 15 C 1.38396 * 120.06667 * 0.48558 * 14 13 12 16 16 Cl 1.73601 * 119.94088 * 179.74519 * 15 14 13 17 17 C 1.38402 * 120.12660 * 359.76994 * 15 14 13 18 18 C 1.38094 * 120.05855 * 359.97438 * 17 15 14 19 19 N 1.46505 * 109.46830 * 65.00572 * 3 2 1 20 20 C 1.36936 * 119.99814 * 274.99883 * 19 3 2 21 21 H 1.08004 * 119.99697 * 359.97438 * 20 19 3 22 22 C 1.38807 * 119.99932 * 180.02562 * 20 19 3 23 23 N 1.31618 * 120.00277 * 359.72339 * 22 20 19 24 24 Si 1.86808 * 119.99662 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46807 * 179.72539 * 24 22 20 26 26 H 1.48497 * 109.47268 * 299.72260 * 24 22 20 27 27 H 1.48501 * 109.47127 * 59.72852 * 24 22 20 28 28 H 1.08994 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46855 * 299.99538 * 1 2 3 30 30 H 1.09005 * 109.47096 * 59.99477 * 1 2 3 31 31 H 1.09000 * 109.46855 * 240.00462 * 2 1 3 32 32 H 1.08998 * 109.47111 * 120.00918 * 2 1 3 33 33 H 1.08995 * 109.47460 * 305.00413 * 5 3 2 34 34 H 1.08997 * 109.46758 * 65.00644 * 5 3 2 35 35 H 0.96993 * 119.99951 * 0.02562 * 6 5 3 36 36 H 0.97004 * 119.99823 * 355.37575 * 11 9 7 37 37 H 1.08001 * 120.03438 * 359.97438 * 13 12 11 38 38 H 1.08006 * 119.96398 * 180.23309 * 14 13 12 39 39 H 1.07991 * 119.97347 * 179.97438 * 17 15 14 40 40 H 1.08001 * 120.02691 * 179.97438 * 18 17 15 41 41 H 0.96995 * 120.00228 * 94.99796 * 19 3 2 42 42 H 0.97004 * 119.99418 * 0.27174 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0857 8 8 6.1641 2.1476 -0.2572 9 6 5.8938 4.4619 0.0370 10 8 5.1155 5.3772 0.2091 11 7 7.2165 4.7081 -0.0433 12 6 7.6845 6.0249 -0.0255 13 6 8.7990 6.3775 -0.7763 14 6 9.2563 7.6804 -0.7605 15 6 8.6116 8.6322 0.0101 16 17 9.1933 10.2677 0.0327 17 6 7.5044 8.2826 0.7632 18 6 7.0394 6.9824 0.7472 19 7 1.6525 2.0974 1.2519 20 6 0.4157 2.6734 1.3690 21 1 -0.2739 2.6452 0.5383 22 6 0.0488 3.2943 2.5550 23 7 0.8875 3.3248 3.5688 24 14 -1.6382 4.0807 2.7144 25 1 -1.7852 4.6662 4.0712 26 1 -1.7839 5.1507 1.6951 27 1 -2.6866 3.0502 2.5038 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.9954 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4411 3.5482 0.1316 36 1 7.8435 3.9713 -0.1134 37 1 9.3051 5.6342 -1.3743 38 1 10.1204 7.9560 -1.3470 39 1 7.0035 9.0272 1.3640 40 1 6.1756 6.7100 1.3354 41 1 2.2720 2.1230 1.9978 42 1 1.7636 2.9167 3.4859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567967261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:29 Heat of formation + Delta-G solvation = -58.867780 kcal Electronic energy + Delta-G solvation = -26210.424216 eV Core-core repulsion = 22215.837802 eV Total energy + Delta-G solvation = -3994.586414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25710 -40.65713 -39.45327 -38.48238 -37.56333 -36.20771 -35.34946 -34.32617 -32.18048 -31.38626 -30.80053 -29.63131 -26.58177 -25.30980 -24.33674 -23.92956 -22.83232 -21.84654 -21.29749 -19.99689 -19.41180 -18.75940 -18.05083 -17.47999 -17.23520 -16.98763 -16.55399 -16.34109 -15.96040 -15.50455 -15.44267 -15.20248 -15.00212 -14.71183 -14.57908 -14.51318 -14.21936 -13.66967 -13.53942 -13.23837 -13.03748 -12.85446 -12.72781 -12.58885 -12.55040 -12.09891 -12.01084 -11.87439 -11.84241 -11.53477 -11.36111 -11.19651 -10.94689 -10.80452 -10.34034 -10.13523 -9.28635 -9.08064 -8.27425 -5.22821 -0.28115 0.20758 0.35026 1.04465 1.17899 1.60569 1.69024 1.84119 1.93040 2.44309 2.54880 2.74680 3.22358 3.48920 3.71571 3.73590 3.78714 3.82702 4.13447 4.23543 4.25486 4.35026 4.38927 4.48378 4.58954 4.76231 4.76407 4.92298 4.96447 5.01171 5.06783 5.12535 5.15895 5.16824 5.22996 5.46850 5.65281 5.67012 5.72958 5.79098 6.17649 6.52740 6.58043 6.74462 7.14604 8.04519 8.15742 9.23234 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.002465 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.207205 B =11354.958281 C =13178.621981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.166 3.834 4 H 0.056 0.944 5 C 0.118 3.882 6 N -0.681 5.681 7 C 0.510 3.490 8 O -0.538 6.538 9 C 0.509 3.491 10 O -0.518 6.518 11 N -0.631 5.631 12 C 0.131 3.869 13 C -0.115 4.115 14 C -0.086 4.086 15 C -0.054 4.054 16 Cl -0.067 7.067 17 C -0.098 4.098 18 C -0.127 4.127 19 N -0.740 5.740 20 C -0.304 4.304 21 H 0.072 0.928 22 C -0.105 4.105 23 N -0.980 5.980 24 Si 1.116 2.884 25 H -0.301 1.301 26 H -0.281 1.281 27 H -0.279 1.279 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.415 0.585 36 H 0.435 0.565 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.358 0.642 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.068 4.377 -12.093 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.057 3.943 4 H 0.074 0.926 5 C -0.006 4.006 6 N -0.332 5.332 7 C 0.290 3.710 8 O -0.417 6.417 9 C 0.291 3.709 10 O -0.393 6.393 11 N -0.279 5.279 12 C 0.037 3.963 13 C -0.135 4.135 14 C -0.105 4.105 15 C -0.081 4.081 16 Cl -0.038 7.038 17 C -0.117 4.117 18 C -0.147 4.147 19 N -0.383 5.383 20 C -0.436 4.436 21 H 0.090 0.910 22 C -0.297 4.297 23 N -0.629 5.629 24 Si 0.944 3.056 25 H -0.228 1.228 26 H -0.208 1.208 27 H -0.206 1.206 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.275 0.725 37 H 0.188 0.812 38 H 0.184 0.816 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.190 0.810 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.872 5.272 -11.298 20.979 hybrid contribution 0.901 -0.674 -0.205 1.144 sum 17.773 4.598 -11.503 21.664 Atomic orbital electron populations 1.21697 0.96116 1.00594 1.01708 1.21965 0.96573 0.96788 1.01423 1.20720 0.90871 0.93592 0.89102 0.92567 1.21877 0.94453 0.81179 1.03081 1.45886 1.06597 1.11931 1.68797 1.19794 0.83667 0.88637 0.78931 1.90739 1.55866 1.45612 1.49437 1.20352 0.83423 0.89579 0.77554 1.90830 1.56562 1.46064 1.45827 1.42991 1.06767 1.08000 1.70103 1.18019 0.96682 0.83933 0.97692 1.21192 0.96293 0.97353 0.98688 1.21181 1.00405 0.90975 0.97949 1.21096 0.97804 0.86975 1.02204 1.98374 1.88036 1.19647 1.97750 1.21062 0.95345 0.96217 0.99072 1.21263 1.01088 0.93153 0.99242 1.42590 1.15853 1.67372 1.12463 1.20209 0.93222 1.29873 1.00261 0.91032 1.26830 1.08122 1.01961 0.92747 1.70996 1.08595 1.49982 1.33324 0.82743 0.71783 0.75886 0.75236 1.22762 1.20753 1.20561 0.92681 0.93515 0.93368 0.90032 0.93344 0.91400 0.88344 0.74789 0.72456 0.81236 0.81558 0.83958 0.85591 0.80981 0.94647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -3.90 5.61 30.60 0.17 -3.73 16 3 C 0.17 5.69 2.59 44.99 0.12 5.81 16 4 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 5 C 0.12 3.49 5.23 86.38 0.45 3.94 16 6 N -0.68 -21.68 5.38 -464.51 -2.50 -24.17 16 7 C 0.51 15.30 7.89 87.24 0.69 15.99 16 8 O -0.54 -16.54 16.48 -3.28 -0.05 -16.60 16 9 C 0.51 14.59 7.73 87.24 0.67 15.26 16 10 O -0.52 -18.01 13.91 -3.32 -0.05 -18.05 16 11 N -0.63 -13.59 5.32 -304.82 -1.62 -15.21 16 12 C 0.13 2.74 6.30 38.21 0.24 2.98 16 13 C -0.12 -1.66 9.97 22.40 0.22 -1.44 16 14 C -0.09 -1.20 9.82 22.27 0.22 -0.99 16 15 C -0.05 -0.96 6.32 22.35 0.14 -0.82 16 16 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 17 C -0.10 -2.06 9.82 22.27 0.22 -1.84 16 18 C -0.13 -3.13 8.69 22.40 0.19 -2.94 16 19 N -0.74 -33.21 4.50 -322.93 -1.45 -34.67 16 20 C -0.30 -15.57 7.75 84.03 0.65 -14.92 16 21 H 0.07 3.57 7.32 -2.91 -0.02 3.55 16 22 C -0.11 -5.86 5.50 84.86 0.47 -5.39 16 23 N -0.98 -59.89 13.70 21.65 0.30 -59.59 16 24 Si 1.12 51.19 29.92 68.60 2.05 53.24 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.92 5.99 -2.39 -0.01 1.91 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.42 14.92 7.61 -92.71 -0.71 14.22 16 36 H 0.43 7.20 8.30 -92.71 -0.77 6.43 16 37 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 2.74 8.06 -2.92 -0.02 2.72 16 40 H 0.13 3.74 6.22 -2.91 -0.02 3.72 16 41 H 0.36 17.47 6.63 -92.71 -0.61 16.85 16 42 H 0.24 14.79 6.77 -92.71 -0.63 14.17 16 Total: -1.00 -66.43 371.84 0.86 -65.57 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.86 Total: 42.87 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.12 Total: 7.82 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -5.28 Total: -133.65 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.10 Total: -34.65 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -66.43 0.86 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567967261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.702 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds