Wall clock time and date at job start Tue Mar 31 2020 23:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 H 1.09001 * 109.46839 * 55.00425 * 3 2 1 5 5 C 1.53001 * 109.46897 * 174.99862 * 3 2 1 6 6 N 1.46501 * 109.46775 * 175.00199 * 5 3 2 7 7 C 1.34781 * 120.00042 * 180.02562 * 6 5 3 8 8 O 1.21362 * 119.99852 * 0.02562 * 7 6 5 9 9 C 1.49341 * 120.00177 * 180.02562 * 7 6 5 10 10 O 1.21385 * 119.99930 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00177 * 180.02562 * 9 7 6 12 12 C 1.39764 * 119.99945 * 175.37722 * 11 9 7 13 13 C 1.38928 * 120.06222 * 214.82101 * 12 11 9 14 14 C 1.38086 * 119.93492 * 179.76897 * 13 12 11 15 15 C 1.38404 * 120.06301 * 0.48868 * 14 13 12 16 16 Cl 1.73600 * 119.93619 * 179.74320 * 15 14 13 17 17 C 1.38393 * 120.12632 * 359.76517 * 15 14 13 18 18 C 1.38093 * 120.06382 * 0.02562 * 17 15 14 19 19 N 1.46497 * 109.47527 * 295.00343 * 3 2 1 20 20 C 1.36933 * 119.99703 * 84.99716 * 19 3 2 21 21 H 1.08005 * 120.00532 * 0.02562 * 20 19 3 22 22 C 1.38818 * 120.00131 * 180.02562 * 20 19 3 23 23 N 1.31618 * 120.00341 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99608 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46899 * 90.00085 * 24 22 20 26 26 H 1.48496 * 109.46985 * 209.99818 * 24 22 20 27 27 H 1.48501 * 109.46986 * 330.00395 * 24 22 20 28 28 H 1.08998 * 109.47542 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47425 * 59.99441 * 1 2 3 30 30 H 1.09005 * 109.47077 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47425 * 120.00559 * 2 1 3 32 32 H 1.09010 * 109.46726 * 240.00521 * 2 1 3 33 33 H 1.08995 * 109.47722 * 295.00549 * 5 3 2 34 34 H 1.09006 * 109.46928 * 55.00706 * 5 3 2 35 35 H 0.97001 * 119.99961 * 0.02562 * 6 5 3 36 36 H 0.97000 * 120.00017 * 355.38344 * 11 9 7 37 37 H 1.07999 * 120.02847 * 359.97438 * 13 12 11 38 38 H 1.08005 * 119.96847 * 180.23552 * 14 13 12 39 39 H 1.08001 * 119.97104 * 179.97438 * 17 15 14 40 40 H 1.08000 * 120.03090 * 179.97438 * 18 17 15 41 41 H 0.97002 * 120.00106 * 265.00205 * 19 3 2 42 42 H 0.97004 * 120.00078 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8167 0.0060 7 6 5.3858 3.0629 0.0859 8 8 6.1641 2.1475 0.2566 9 6 5.8936 4.4620 -0.0356 10 8 5.1152 5.3776 -0.2067 11 7 7.2164 4.7082 0.0438 12 6 7.7002 6.0025 -0.1660 13 6 8.9274 6.1944 -0.7882 14 6 9.4007 7.4745 -0.9984 15 6 8.6584 8.5655 -0.5808 16 17 9.2596 10.1731 -0.8408 17 6 7.4380 8.3771 0.0440 18 6 6.9577 7.0994 0.2531 19 7 1.6524 2.0976 -1.2517 20 6 0.4156 2.6736 -1.3686 21 1 -0.2740 2.6453 -0.5378 22 6 0.0481 3.2939 -2.5548 23 7 -1.1409 3.8470 -2.6673 24 14 1.2411 3.3434 -3.9914 25 1 1.0383 2.1451 -4.8448 26 1 0.9989 4.5692 -4.7938 27 1 2.6343 3.3551 -3.4776 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8499 1.0376 1.0960 34 1 3.9954 0.8311 -0.6660 35 1 3.4409 3.5483 -0.1307 36 1 7.8326 3.9870 0.2464 37 1 9.5091 5.3433 -1.1102 38 1 10.3529 7.6244 -1.4855 39 1 6.8611 9.2302 0.3693 40 1 6.0054 6.9530 0.7411 41 1 2.2719 2.1233 -1.9977 42 1 -1.3976 4.2808 -3.4962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567967262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:32 Heat of formation + Delta-G solvation = -35.463885 kcal Electronic energy + Delta-G solvation = -26273.676994 eV Core-core repulsion = 22280.105449 eV Total energy + Delta-G solvation = -3993.571545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23557 -39.66792 -38.44105 -37.04327 -36.80008 -35.19628 -33.90452 -32.39211 -31.45522 -30.33559 -29.95957 -28.53910 -25.43583 -23.65645 -23.31311 -22.60563 -21.82005 -20.49526 -20.13734 -18.98044 -17.98355 -17.45226 -17.15266 -16.39329 -16.24035 -15.66472 -15.50975 -15.01404 -14.69415 -14.26746 -14.22941 -13.93051 -13.85357 -13.68681 -13.28250 -13.01627 -12.88003 -12.74549 -12.53621 -12.23824 -11.89002 -11.73649 -11.60719 -11.24123 -11.15251 -11.00803 -10.76382 -10.50686 -10.47970 -10.37150 -10.06218 -9.74328 -9.52614 -9.39488 -9.13469 -9.01282 -8.48318 -7.39594 -5.84031 -3.21029 0.59072 0.93210 1.36602 1.82045 2.15141 3.01671 3.32857 3.33435 3.36308 3.42757 3.48280 4.33351 4.44655 4.51115 4.52999 4.86306 4.97864 5.06870 5.09136 5.14080 5.39542 5.50880 5.61224 5.63090 5.76844 5.80718 5.83306 5.88261 5.89680 5.96500 6.17848 6.23247 6.41844 6.44945 6.49806 6.58416 6.73709 6.85900 7.24818 7.27997 7.57740 7.89301 7.93427 8.33647 9.10600 9.83168 10.00906 11.33401 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.002581 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.945157 B =10846.555883 C =12230.002059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.066 0.934 5 C 0.108 3.892 6 N -0.677 5.677 7 C 0.506 3.494 8 O -0.530 6.530 9 C 0.507 3.493 10 O -0.487 6.487 11 N -0.649 5.649 12 C 0.150 3.850 13 C -0.129 4.129 14 C -0.091 4.091 15 C -0.050 4.050 16 Cl -0.072 7.072 17 C -0.089 4.089 18 C -0.108 4.108 19 N -0.747 5.747 20 C -0.245 4.245 21 H 0.096 0.904 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.880 3.120 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.424 0.576 36 H 0.424 0.576 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.382 3.682 7.309 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.057 3.943 4 H 0.083 0.917 5 C -0.016 4.016 6 N -0.330 5.330 7 C 0.285 3.715 8 O -0.408 6.408 9 C 0.289 3.711 10 O -0.359 6.359 11 N -0.297 5.297 12 C 0.055 3.945 13 C -0.150 4.150 14 C -0.111 4.111 15 C -0.077 4.077 16 Cl -0.044 7.044 17 C -0.108 4.108 18 C -0.128 4.128 19 N -0.390 5.390 20 C -0.375 4.375 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.576 5.576 24 Si 0.711 3.289 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.262 0.738 36 H 0.262 0.738 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.195 0.805 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.081 3.865 7.315 22.646 hybrid contribution 0.825 0.168 -1.258 1.514 sum 21.906 4.032 6.057 23.083 Atomic orbital electron populations 1.21782 0.95056 0.99792 1.03900 1.22036 0.97521 0.97524 1.00177 1.20574 0.89241 0.93361 0.91107 0.91651 1.21969 0.96242 0.81239 1.02150 1.45885 1.06346 1.12144 1.68614 1.19690 0.84066 0.88267 0.79481 1.90754 1.55860 1.45276 1.48957 1.20531 0.82648 0.90437 0.77469 1.90833 1.55367 1.45467 1.44210 1.43143 1.08130 1.09618 1.68780 1.17830 0.94513 0.84259 0.97892 1.20893 0.96251 0.97582 1.00265 1.20827 1.00094 0.90431 0.99714 1.20953 0.96329 0.86129 1.04287 1.98372 1.87833 1.22721 1.95440 1.21004 0.94019 0.97778 0.98041 1.21343 1.01235 0.90454 0.99786 1.42831 1.16968 1.67661 1.11575 1.19022 0.90488 1.28038 0.99909 0.88657 1.24652 0.96317 1.00106 0.97555 1.69684 1.19256 1.41846 1.26779 0.86634 0.81098 0.77348 0.83867 1.21170 1.21753 1.20463 0.94785 0.89268 0.93812 0.93455 0.92567 0.90537 0.91039 0.73757 0.73757 0.84415 0.84407 0.84325 0.83142 0.80526 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.04 5.61 -26.73 -0.15 -2.19 16 3 C 0.17 2.79 2.59 -67.93 -0.18 2.61 16 4 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.56 5.23 -4.04 -0.02 1.53 16 6 N -0.68 -10.25 5.38 -60.76 -0.33 -10.58 16 7 C 0.51 7.30 7.89 -11.63 -0.09 7.21 16 8 O -0.53 -8.08 16.48 5.49 0.09 -7.99 16 9 C 0.51 6.88 7.73 -11.63 -0.09 6.79 16 10 O -0.49 -7.79 13.91 5.47 0.08 -7.72 16 11 N -0.65 -6.87 5.32 -10.29 -0.05 -6.92 16 12 C 0.15 1.57 6.30 -83.73 -0.53 1.04 16 13 C -0.13 -1.09 9.97 -39.38 -0.39 -1.48 16 14 C -0.09 -0.76 9.82 -39.58 -0.39 -1.15 16 15 C -0.05 -0.47 6.32 -39.46 -0.25 -0.72 16 16 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.15 16 17 C -0.09 -0.89 9.82 -39.58 -0.39 -1.28 16 18 C -0.11 -1.21 8.69 -39.38 -0.34 -1.55 16 19 N -0.75 -15.65 4.31 -53.42 -0.23 -15.88 16 20 C -0.25 -6.24 8.23 -15.06 -0.12 -6.37 16 21 H 0.10 2.61 7.56 -52.48 -0.40 2.21 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 23 N -0.93 -27.95 13.97 55.49 0.78 -27.17 16 24 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.42 7.00 7.61 -40.82 -0.31 6.69 16 36 H 0.42 3.57 8.30 -40.82 -0.34 3.24 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.84 6.23 -52.49 -0.33 1.51 16 41 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -30.46 370.43 -8.31 -38.76 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -5.31 Total: 14.81 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.70 Total: 2.44 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.16 Total: -60.56 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.17 Total: -15.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.46 -8.31 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567967262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.300 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds