Wall clock time and date at job start Tue Mar 31 2020 23:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47189 * 2 1 4 4 H 1.09001 * 109.46839 * 55.00425 * 3 2 1 5 5 C 1.53001 * 109.46897 * 174.99862 * 3 2 1 6 6 N 1.46501 * 109.46775 * 175.00199 * 5 3 2 7 7 C 1.34781 * 120.00042 * 180.02562 * 6 5 3 8 8 O 1.21362 * 119.99852 * 0.02562 * 7 6 5 9 9 C 1.49341 * 120.00177 * 180.02562 * 7 6 5 10 10 O 1.21385 * 119.99930 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00177 * 180.02562 * 9 7 6 12 12 C 1.39764 * 119.99945 * 175.37722 * 11 9 7 13 13 C 1.38928 * 120.06222 * 214.82101 * 12 11 9 14 14 C 1.38086 * 119.93492 * 179.76897 * 13 12 11 15 15 C 1.38404 * 120.06301 * 0.48868 * 14 13 12 16 16 Cl 1.73600 * 119.93619 * 179.74320 * 15 14 13 17 17 C 1.38393 * 120.12632 * 359.76517 * 15 14 13 18 18 C 1.38093 * 120.06382 * 0.02562 * 17 15 14 19 19 N 1.46497 * 109.47527 * 295.00343 * 3 2 1 20 20 C 1.36933 * 119.99703 * 84.99716 * 19 3 2 21 21 H 1.08005 * 120.00532 * 0.02562 * 20 19 3 22 22 C 1.38818 * 120.00131 * 180.02562 * 20 19 3 23 23 N 1.31618 * 120.00341 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99608 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46899 * 90.00085 * 24 22 20 26 26 H 1.48496 * 109.46985 * 209.99818 * 24 22 20 27 27 H 1.48501 * 109.46986 * 330.00395 * 24 22 20 28 28 H 1.08998 * 109.47542 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47425 * 59.99441 * 1 2 3 30 30 H 1.09005 * 109.47077 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47425 * 120.00559 * 2 1 3 32 32 H 1.09010 * 109.46726 * 240.00521 * 2 1 3 33 33 H 1.08995 * 109.47722 * 295.00549 * 5 3 2 34 34 H 1.09006 * 109.46928 * 55.00706 * 5 3 2 35 35 H 0.97001 * 119.99961 * 0.02562 * 6 5 3 36 36 H 0.97000 * 120.00017 * 355.38344 * 11 9 7 37 37 H 1.07999 * 120.02847 * 359.97438 * 13 12 11 38 38 H 1.08005 * 119.96847 * 180.23552 * 14 13 12 39 39 H 1.08001 * 119.97104 * 179.97438 * 17 15 14 40 40 H 1.08000 * 120.03090 * 179.97438 * 18 17 15 41 41 H 0.97002 * 120.00106 * 265.00205 * 19 3 2 42 42 H 0.97004 * 120.00078 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8167 0.0060 7 6 5.3858 3.0629 0.0859 8 8 6.1641 2.1475 0.2566 9 6 5.8936 4.4620 -0.0356 10 8 5.1152 5.3776 -0.2067 11 7 7.2164 4.7082 0.0438 12 6 7.7002 6.0025 -0.1660 13 6 8.9274 6.1944 -0.7882 14 6 9.4007 7.4745 -0.9984 15 6 8.6584 8.5655 -0.5808 16 17 9.2596 10.1731 -0.8408 17 6 7.4380 8.3771 0.0440 18 6 6.9577 7.0994 0.2531 19 7 1.6524 2.0976 -1.2517 20 6 0.4156 2.6736 -1.3686 21 1 -0.2740 2.6453 -0.5378 22 6 0.0481 3.2939 -2.5548 23 7 -1.1409 3.8470 -2.6673 24 14 1.2411 3.3434 -3.9914 25 1 1.0383 2.1451 -4.8448 26 1 0.9989 4.5692 -4.7938 27 1 2.6343 3.3551 -3.4776 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8499 1.0376 1.0960 34 1 3.9954 0.8311 -0.6660 35 1 3.4409 3.5483 -0.1307 36 1 7.8326 3.9870 0.2464 37 1 9.5091 5.3433 -1.1102 38 1 10.3529 7.6244 -1.4855 39 1 6.8611 9.2302 0.3693 40 1 6.0054 6.9530 0.7411 41 1 2.2719 2.1233 -1.9977 42 1 -1.3976 4.2808 -3.4962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567967262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:31 Heat of formation + Delta-G solvation = -56.342347 kcal Electronic energy + Delta-G solvation = -26274.582352 eV Core-core repulsion = 22280.105449 eV Total energy + Delta-G solvation = -3994.476903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.23044 -40.63276 -39.43268 -38.45602 -37.55657 -36.16798 -35.21757 -34.15938 -32.17208 -32.08279 -30.81621 -29.87170 -26.62398 -25.10097 -24.26670 -23.85422 -22.80248 -21.80336 -21.31699 -20.17516 -19.38618 -18.69603 -18.02886 -17.43756 -17.29980 -16.91420 -16.74414 -16.16204 -15.87858 -15.63594 -15.22688 -15.11642 -14.73286 -14.67112 -14.56804 -14.49188 -14.44444 -14.01148 -13.53214 -13.12345 -13.03163 -12.92904 -12.89058 -12.79242 -12.54895 -12.31313 -12.13901 -11.91008 -11.86357 -11.60593 -11.40528 -11.34345 -10.99400 -10.79870 -10.29625 -10.12480 -9.30368 -9.27376 -7.96627 -5.28331 -0.26415 0.21752 0.37570 1.05854 1.19416 1.37807 1.39084 1.45804 1.96312 2.47408 2.50460 2.56219 3.24982 3.36794 3.58131 3.74271 3.82447 3.83709 4.14692 4.24790 4.30613 4.35974 4.44234 4.56302 4.66633 4.77578 4.81592 4.92550 5.02000 5.07403 5.08179 5.16609 5.17516 5.19961 5.28387 5.52554 5.67395 5.75164 5.81823 5.86809 6.21167 6.26333 6.55673 6.78048 7.12603 7.87189 8.04054 9.24531 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.002581 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.945157 B =10846.555883 C =12230.002059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.164 3.836 4 H 0.060 0.940 5 C 0.116 3.884 6 N -0.685 5.685 7 C 0.511 3.489 8 O -0.536 6.536 9 C 0.508 3.492 10 O -0.518 6.518 11 N -0.631 5.631 12 C 0.130 3.870 13 C -0.118 4.118 14 C -0.088 4.088 15 C -0.055 4.055 16 Cl -0.068 7.068 17 C -0.098 4.098 18 C -0.125 4.125 19 N -0.748 5.748 20 C -0.203 4.203 21 H 0.070 0.930 22 C -0.061 4.061 23 N -0.983 5.983 24 Si 0.940 3.060 25 H -0.284 1.284 26 H -0.306 1.306 27 H -0.258 1.258 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.435 0.565 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.362 0.638 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.783 2.355 7.626 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.056 3.944 4 H 0.078 0.922 5 C -0.008 4.008 6 N -0.336 5.336 7 C 0.291 3.709 8 O -0.414 6.414 9 C 0.290 3.710 10 O -0.393 6.393 11 N -0.279 5.279 12 C 0.036 3.964 13 C -0.138 4.138 14 C -0.107 4.107 15 C -0.082 4.082 16 Cl -0.040 7.040 17 C -0.117 4.117 18 C -0.145 4.145 19 N -0.391 5.391 20 C -0.334 4.334 21 H 0.088 0.912 22 C -0.252 4.252 23 N -0.634 5.634 24 Si 0.769 3.231 25 H -0.210 1.210 26 H -0.234 1.234 27 H -0.183 1.183 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.276 0.724 37 H 0.185 0.815 38 H 0.181 0.819 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.195 0.805 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.578 2.481 7.678 25.869 hybrid contribution -0.169 0.560 -1.209 1.343 sum 24.409 3.042 6.469 25.434 Atomic orbital electron populations 1.21705 0.96608 1.00448 1.01536 1.21947 0.95945 0.96534 1.02140 1.20778 0.91184 0.93751 0.88720 0.92198 1.21932 0.93961 0.81139 1.03730 1.45939 1.06597 1.12136 1.68954 1.19742 0.83689 0.88537 0.78968 1.90748 1.55851 1.45536 1.49274 1.20410 0.83419 0.89715 0.77477 1.90833 1.56310 1.46031 1.46131 1.42998 1.07219 1.10192 1.67470 1.18018 0.95490 0.83730 0.99120 1.21189 0.95216 0.98676 0.98732 1.21166 1.00765 0.89887 0.98923 1.21113 0.96245 0.86785 1.04095 1.98375 1.87668 1.22541 1.95375 1.21088 0.94615 0.97594 0.98407 1.21290 1.01024 0.91451 1.00719 1.42832 1.15268 1.67695 1.13335 1.18957 0.91195 1.25026 0.98224 0.91198 1.25293 0.97868 1.01616 1.00433 1.69845 1.21629 1.44711 1.27223 0.85640 0.80189 0.76420 0.80814 1.21027 1.23391 1.18290 0.92697 0.93691 0.94002 0.89707 0.92270 0.88016 0.90521 0.74640 0.72424 0.81494 0.81853 0.83743 0.84889 0.80450 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -3.53 5.61 30.59 0.17 -3.36 16 3 C 0.16 5.15 2.59 44.99 0.12 5.27 16 4 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 5 C 0.12 3.00 5.23 86.38 0.45 3.46 16 6 N -0.68 -19.55 5.38 -464.51 -2.50 -22.05 16 7 C 0.51 13.81 7.89 87.23 0.69 14.50 16 8 O -0.54 -14.90 16.48 -3.28 -0.05 -14.96 16 9 C 0.51 13.28 7.73 87.23 0.67 13.95 16 10 O -0.52 -16.64 13.91 -3.36 -0.05 -16.69 16 11 N -0.63 -12.31 5.32 -304.81 -1.62 -13.93 16 12 C 0.13 2.54 6.30 38.21 0.24 2.78 16 13 C -0.12 -1.65 9.97 22.40 0.22 -1.42 16 14 C -0.09 -1.22 9.82 22.27 0.22 -1.00 16 15 C -0.06 -0.95 6.32 22.35 0.14 -0.81 16 16 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 17 C -0.10 -1.90 9.82 22.27 0.22 -1.68 16 18 C -0.12 -2.77 8.69 22.40 0.19 -2.58 16 19 N -0.75 -30.67 4.31 -322.94 -1.39 -32.06 16 20 C -0.20 -10.49 8.23 84.04 0.69 -9.80 16 21 H 0.07 3.95 7.56 -2.91 -0.02 3.93 16 22 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 23 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 24 Si 0.94 45.12 27.74 68.60 1.90 47.02 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 27 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.88 5.99 -2.39 -0.01 1.87 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.42 13.43 7.61 -92.71 -0.71 12.72 16 36 H 0.44 6.30 8.30 -92.71 -0.77 5.54 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.13 3.40 6.23 -2.91 -0.02 3.38 16 41 H 0.36 14.93 5.66 -92.71 -0.52 14.40 16 42 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -67.62 370.43 0.70 -66.92 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.97 Total: 35.95 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.16 Total: 12.17 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -5.21 Total: -129.21 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.10 Total: -31.65 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -67.62 0.70 -66.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567967262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.573 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds