Wall clock time and date at job start Tue Mar 31 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48498 * 109.46966 * 269.99259 * 3 2 1 5 5 H 1.48495 * 109.47384 * 30.00001 * 3 2 1 6 6 H 1.48502 * 109.46786 * 149.99920 * 3 2 1 7 7 C 1.38815 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99496 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99453 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.49655 * 60.06595 * 10 9 7 12 12 O 1.42898 * 109.47167 * 304.92854 * 11 10 9 13 13 C 1.53041 * 109.52038 * 180.14434 * 10 9 7 14 14 C 1.53033 * 109.53724 * 58.60431 * 13 10 9 15 15 C 1.53189 * 109.31329 * 61.36260 * 14 13 10 16 16 N 1.46958 * 108.88992 * 305.44282 * 15 14 13 17 17 C 1.34779 * 120.65017 * 233.53199 * 16 15 14 18 18 O 1.21532 * 119.99195 * 172.19137 * 17 16 15 19 19 C 1.48098 * 120.00523 * 352.19208 * 17 16 15 20 20 C 1.39349 * 119.70724 * 170.66404 * 19 17 16 21 21 C 1.38531 * 119.07356 * 180.02562 * 20 19 17 22 22 C 1.38769 * 118.48130 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.33719 * 179.97438 * 22 21 20 24 24 C 1.38719 * 119.32148 * 0.02562 * 22 21 20 25 25 N 1.31490 * 120.88085 * 359.71807 * 24 22 21 26 26 C 1.46921 * 118.71478 * 53.35596 * 16 15 14 27 27 H 0.97006 * 119.99951 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00029 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47080 * 64.93765 * 11 10 9 30 30 H 1.09006 * 109.46641 * 184.93170 * 11 10 9 31 31 H 0.96697 * 113.99562 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.45551 * 178.62281 * 13 10 9 33 33 H 1.09001 * 109.46277 * 298.58140 * 13 10 9 34 34 H 1.09001 * 109.50113 * 181.31642 * 14 13 10 35 35 H 1.08999 * 109.50095 * 301.41099 * 14 13 10 36 36 H 1.09003 * 109.58548 * 65.15801 * 15 14 13 37 37 H 1.09010 * 109.58635 * 185.43067 * 15 14 13 38 38 H 1.07994 * 120.46723 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75935 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.55608 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.58872 * 186.78686 * 26 16 15 42 42 H 1.08998 * 109.58545 * 66.49928 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 3.7444 -3.2728 -1.2492 12 8 2.3261 -3.4355 -1.3108 13 6 5.6169 -2.1928 0.0053 14 6 5.9804 -1.3628 1.2386 15 6 5.6314 -2.1543 2.5029 16 7 4.2186 -2.5539 2.4392 17 6 3.3756 -2.2613 3.4493 18 8 2.1845 -2.4688 3.3260 19 6 3.9007 -1.6869 4.7093 20 6 3.0144 -1.2062 5.6712 21 6 3.5199 -0.6711 6.8448 22 6 4.8964 -0.6355 7.0168 23 17 5.5819 0.0251 8.4685 24 6 5.7191 -1.1322 6.0164 25 7 5.2112 -1.6390 4.9146 26 6 3.7418 -3.2751 1.2513 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3623 0.0014 29 1 4.0881 -2.7406 -2.1362 30 1 4.2209 -4.2523 -1.2057 31 1 2.0206 -3.9354 -2.0802 32 1 6.1606 -3.1372 0.0300 33 1 5.8870 -1.6420 -0.8956 34 1 7.0484 -1.1452 1.2288 35 1 5.4183 -0.4290 1.2273 36 1 6.2583 -3.0441 2.5616 37 1 5.7981 -1.5313 3.3817 38 1 1.9484 -1.2501 5.5042 39 1 2.8578 -0.2912 7.6088 40 1 6.7910 -1.1067 6.1465 41 1 2.6592 -3.3908 1.3041 42 1 4.2125 -4.2572 1.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570294330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:51 Heat of formation + Delta-G solvation = -1.800020 kcal Electronic energy + Delta-G solvation = -28587.930587 eV Core-core repulsion = 24595.818817 eV Total energy + Delta-G solvation = -3992.111770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90283 -39.36843 -37.69875 -36.91843 -35.72351 -33.95576 -32.84791 -32.12736 -31.40053 -30.99482 -29.15573 -26.05454 -25.32412 -24.05560 -23.56281 -23.15229 -21.61995 -20.23948 -18.48913 -17.75503 -17.28548 -17.18686 -16.53821 -16.23453 -15.55339 -15.24704 -15.08217 -14.72031 -14.22778 -14.10486 -13.99370 -13.69206 -13.39161 -13.25915 -13.18024 -12.61480 -12.49237 -12.45657 -12.23527 -11.98669 -11.73335 -11.64525 -11.20851 -10.97116 -10.83439 -10.62549 -10.59679 -10.17079 -10.13284 -9.88185 -9.78999 -9.36548 -9.20594 -8.99762 -8.90677 -8.75572 -8.03418 -7.04867 -5.47245 -2.81273 0.35403 0.86231 1.65386 2.84851 3.30328 3.45081 3.47654 3.54664 3.79130 4.01262 4.38011 4.54656 4.65866 4.74581 4.84052 4.89805 5.15418 5.25608 5.36459 5.44390 5.46390 5.53649 5.58575 5.69583 5.86643 5.87482 5.89623 5.98715 6.03593 6.08191 6.15883 6.18864 6.28589 6.49201 6.59413 6.65218 6.87776 7.12493 7.37153 7.91306 8.33660 8.45422 8.62657 8.73650 9.51051 10.17899 10.33156 11.71699 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.004104 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.869979 B = 6820.669921 C = 7613.320379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.867 3.133 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.284 1.284 7 C -0.199 4.199 8 H 0.117 0.883 9 N -0.729 5.729 10 C 0.195 3.805 11 C 0.076 3.924 12 O -0.529 6.529 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.078 3.922 16 N -0.574 5.574 17 C 0.562 3.438 18 O -0.504 6.504 19 C 0.099 3.901 20 C -0.098 4.098 21 C -0.069 4.069 22 C -0.078 4.078 23 Cl -0.055 7.055 24 C 0.104 3.896 25 N -0.435 5.435 26 C 0.108 3.892 27 H 0.252 0.748 28 H 0.357 0.643 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.352 0.648 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.108 0.892 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.034 -5.003 11.458 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.196 4.196 3 Si 0.699 3.301 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.328 4.328 8 H 0.134 0.866 9 N -0.371 5.371 10 C 0.102 3.898 11 C -0.006 4.006 12 O -0.332 6.332 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.045 4.045 16 N -0.304 5.304 17 C 0.347 3.653 18 O -0.377 6.377 19 C -0.039 4.039 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.107 4.107 23 Cl -0.026 7.026 24 C -0.056 4.056 25 N -0.147 5.147 26 C -0.016 4.016 27 H 0.063 0.937 28 H 0.191 0.809 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.197 0.803 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.170 0.830 40 H 0.187 0.813 41 H 0.126 0.874 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.749 -5.101 11.419 20.111 hybrid contribution 0.296 1.561 0.099 1.592 sum 16.045 -3.540 11.518 20.066 Atomic orbital electron populations 1.69681 1.04750 1.24660 1.59618 1.24596 0.95033 0.96101 1.03848 0.86817 0.79107 0.86873 0.77301 1.21729 1.22245 1.21090 1.19387 0.79901 0.95208 1.38350 0.86583 1.42824 1.04441 1.00666 1.89177 1.19897 0.89941 0.87982 0.91947 1.22649 0.83031 0.96428 0.98448 1.87040 1.20263 1.77621 1.48255 1.21696 0.95527 1.00167 0.98398 1.21929 1.00540 0.99851 0.94974 1.22798 0.80926 1.00029 1.00711 1.47579 1.09613 1.55559 1.17691 1.17634 0.85912 0.79396 0.82370 1.90886 1.14141 1.52240 1.80467 1.21695 0.89011 0.97109 0.96044 1.22234 1.02986 0.94974 0.91720 1.21594 0.93368 0.96713 0.97863 1.22295 0.94691 1.02600 0.91130 1.98388 1.84752 1.84085 1.35368 1.22988 1.00805 0.94101 0.87659 1.67885 1.13364 1.14624 1.18819 1.22182 1.03020 0.92173 0.84207 0.93744 0.80933 0.94468 0.95641 0.80300 0.91552 0.91756 0.91406 0.91328 0.92359 0.84607 0.82107 0.83031 0.81251 0.87371 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.84 13.97 55.49 0.78 -30.06 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 3 Si 0.87 23.09 27.74 -169.99 -4.71 18.37 16 4 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 5 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 6 H -0.28 -7.14 6.52 56.52 0.37 -6.77 16 7 C -0.20 -5.67 8.55 -15.06 -0.13 -5.80 16 8 H 0.12 3.65 5.49 -52.49 -0.29 3.36 16 9 N -0.73 -17.14 4.56 -47.11 -0.21 -17.36 16 10 C 0.20 3.63 0.68 -131.70 -0.09 3.54 16 11 C 0.08 1.30 6.09 37.16 0.23 1.53 16 12 O -0.53 -10.57 10.05 -35.23 -0.35 -10.92 16 13 C -0.12 -1.75 4.76 -26.69 -0.13 -1.88 16 14 C -0.13 -1.93 5.91 -26.62 -0.16 -2.09 16 15 C 0.08 1.13 5.87 -3.69 -0.02 1.11 16 16 N -0.57 -10.38 2.90 -173.76 -0.50 -10.88 16 17 C 0.56 11.10 7.65 -12.21 -0.09 11.00 16 18 O -0.50 -12.01 15.79 5.34 0.08 -11.93 16 19 C 0.10 1.56 6.58 -83.02 -0.55 1.01 16 20 C -0.10 -1.36 9.63 -39.06 -0.38 -1.73 16 21 C -0.07 -0.74 9.97 -39.28 -0.39 -1.13 16 22 C -0.08 -0.79 6.35 -39.21 -0.25 -1.04 16 23 Cl -0.05 -0.47 28.99 -51.86 -1.50 -1.97 16 24 C 0.10 1.07 10.98 -17.52 -0.19 0.88 16 25 N -0.43 -5.71 6.13 -9.77 -0.06 -5.77 16 26 C 0.11 2.06 4.92 -3.71 -0.02 2.04 16 27 H 0.25 8.00 8.31 -40.82 -0.34 7.66 16 28 H 0.36 8.47 4.29 -40.82 -0.18 8.30 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.35 5.31 9.12 45.56 0.42 5.72 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.14 1.91 4.04 -83.63 -0.34 1.57 16 38 H 0.16 2.28 7.67 -52.49 -0.40 1.88 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.11 2.55 5.81 -51.93 -0.30 2.25 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -36.55 348.90 -7.91 -44.46 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.41 Total: 13.52 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.26 Total: 7.28 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.00 Total: -64.07 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.27 Total: -22.85 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.55 -7.91 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570294330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.659 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds