Wall clock time and date at job start Tue Mar 31 2020 22:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48498 * 109.46966 * 269.99259 * 3 2 1 5 5 H 1.48495 * 109.47384 * 30.00001 * 3 2 1 6 6 H 1.48502 * 109.46786 * 149.99920 * 3 2 1 7 7 C 1.38815 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99496 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99453 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.49655 * 60.06595 * 10 9 7 12 12 O 1.42898 * 109.47167 * 304.92854 * 11 10 9 13 13 C 1.53041 * 109.52038 * 180.14434 * 10 9 7 14 14 C 1.53033 * 109.53724 * 58.60431 * 13 10 9 15 15 C 1.53189 * 109.31329 * 61.36260 * 14 13 10 16 16 N 1.46958 * 108.88992 * 305.44282 * 15 14 13 17 17 C 1.34779 * 120.65017 * 233.53199 * 16 15 14 18 18 O 1.21532 * 119.99195 * 172.19137 * 17 16 15 19 19 C 1.48098 * 120.00523 * 352.19208 * 17 16 15 20 20 C 1.39349 * 119.70724 * 170.66404 * 19 17 16 21 21 C 1.38531 * 119.07356 * 180.02562 * 20 19 17 22 22 C 1.38769 * 118.48130 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.33719 * 179.97438 * 22 21 20 24 24 C 1.38719 * 119.32148 * 0.02562 * 22 21 20 25 25 N 1.31490 * 120.88085 * 359.71807 * 24 22 21 26 26 C 1.46921 * 118.71478 * 53.35596 * 16 15 14 27 27 H 0.97006 * 119.99951 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00029 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47080 * 64.93765 * 11 10 9 30 30 H 1.09006 * 109.46641 * 184.93170 * 11 10 9 31 31 H 0.96697 * 113.99562 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.45551 * 178.62281 * 13 10 9 33 33 H 1.09001 * 109.46277 * 298.58140 * 13 10 9 34 34 H 1.09001 * 109.50113 * 181.31642 * 14 13 10 35 35 H 1.08999 * 109.50095 * 301.41099 * 14 13 10 36 36 H 1.09003 * 109.58548 * 65.15801 * 15 14 13 37 37 H 1.09010 * 109.58635 * 185.43067 * 15 14 13 38 38 H 1.07994 * 120.46723 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.75935 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.55608 * 180.02562 * 24 22 21 41 41 H 1.09001 * 109.58872 * 186.78686 * 26 16 15 42 42 H 1.08998 * 109.58545 * 66.49928 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 3.7444 -3.2728 -1.2492 12 8 2.3261 -3.4355 -1.3108 13 6 5.6169 -2.1928 0.0053 14 6 5.9804 -1.3628 1.2386 15 6 5.6314 -2.1543 2.5029 16 7 4.2186 -2.5539 2.4392 17 6 3.3756 -2.2613 3.4493 18 8 2.1845 -2.4688 3.3260 19 6 3.9007 -1.6869 4.7093 20 6 3.0144 -1.2062 5.6712 21 6 3.5199 -0.6711 6.8448 22 6 4.8964 -0.6355 7.0168 23 17 5.5819 0.0251 8.4685 24 6 5.7191 -1.1322 6.0164 25 7 5.2112 -1.6390 4.9146 26 6 3.7418 -3.2751 1.2513 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3623 0.0014 29 1 4.0881 -2.7406 -2.1362 30 1 4.2209 -4.2523 -1.2057 31 1 2.0206 -3.9354 -2.0802 32 1 6.1606 -3.1372 0.0300 33 1 5.8870 -1.6420 -0.8956 34 1 7.0484 -1.1452 1.2288 35 1 5.4183 -0.4290 1.2273 36 1 6.2583 -3.0441 2.5616 37 1 5.7981 -1.5313 3.3817 38 1 1.9484 -1.2501 5.5042 39 1 2.8578 -0.2912 7.6088 40 1 6.7910 -1.1067 6.1465 41 1 2.6592 -3.3908 1.3041 42 1 4.2125 -4.2572 1.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570294330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:50 Heat of formation + Delta-G solvation = -30.605757 kcal Electronic energy + Delta-G solvation = -28589.179698 eV Core-core repulsion = 24595.818817 eV Total energy + Delta-G solvation = -3993.360881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03602 -40.64950 -39.17207 -37.74000 -37.17184 -35.64571 -34.23031 -33.52768 -32.66601 -32.38694 -30.94288 -27.39877 -26.58362 -25.29534 -24.99479 -24.63766 -22.89636 -21.53871 -20.04346 -19.66032 -18.49068 -18.24700 -17.82678 -17.57281 -16.94921 -16.61717 -16.37333 -16.16952 -15.76216 -15.63627 -15.19193 -14.89492 -14.71952 -14.70542 -14.50704 -14.27160 -13.87981 -13.58177 -13.46419 -13.40145 -13.05033 -13.01729 -12.72701 -12.54970 -12.38343 -12.09768 -11.90751 -11.84792 -11.36778 -11.35227 -11.29411 -11.06163 -10.88433 -10.55654 -10.16888 -10.04134 -9.56722 -9.04214 -7.79760 -5.10135 -0.67509 -0.04269 0.83278 1.28121 1.34032 1.39608 1.63835 2.01292 2.56931 2.61247 2.95404 3.34926 3.53407 3.56666 3.58578 3.71695 3.72525 3.83415 4.03677 4.09697 4.22991 4.33183 4.54035 4.58736 4.60602 4.63779 4.74232 4.77007 4.81166 4.86922 4.94137 5.01871 5.09910 5.16704 5.31152 5.45350 5.48444 5.82273 6.15455 6.33873 6.47753 6.56850 7.13699 7.20597 7.34422 8.01085 8.17063 9.43503 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.004104 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.869979 B = 6820.669921 C = 7613.320379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.997 5.997 2 C -0.087 4.087 3 Si 0.935 3.065 4 H -0.283 1.283 5 H -0.309 1.309 6 H -0.261 1.261 7 C -0.155 4.155 8 H 0.079 0.921 9 N -0.732 5.732 10 C 0.181 3.819 11 C 0.072 3.928 12 O -0.570 6.570 13 C -0.113 4.113 14 C -0.132 4.132 15 C 0.073 3.927 16 N -0.575 5.575 17 C 0.548 3.452 18 O -0.570 6.570 19 C 0.073 3.927 20 C -0.113 4.113 21 C -0.060 4.060 22 C -0.068 4.068 23 Cl -0.030 7.030 24 C 0.112 3.888 25 N -0.435 5.435 26 C 0.112 3.888 27 H 0.244 0.756 28 H 0.358 0.642 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.371 0.629 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.178 0.822 40 H 0.210 0.790 41 H 0.050 0.950 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.418 -4.858 12.685 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.652 5.652 2 C -0.274 4.274 3 Si 0.766 3.234 4 H -0.210 1.210 5 H -0.237 1.237 6 H -0.186 1.186 7 C -0.286 4.286 8 H 0.097 0.903 9 N -0.374 5.374 10 C 0.090 3.910 11 C -0.007 4.007 12 O -0.375 6.375 13 C -0.151 4.151 14 C -0.170 4.170 15 C -0.048 4.048 16 N -0.304 5.304 17 C 0.335 3.665 18 O -0.449 6.449 19 C -0.063 4.063 20 C -0.134 4.134 21 C -0.086 4.086 22 C -0.097 4.097 23 Cl -0.001 7.001 24 C -0.048 4.048 25 N -0.147 5.147 26 C -0.013 4.013 27 H 0.053 0.947 28 H 0.191 0.809 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.196 0.804 40 H 0.226 0.774 41 H 0.069 0.931 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.257 -5.000 12.623 25.223 hybrid contribution -1.244 1.357 -0.141 1.846 sum 20.013 -3.643 12.482 23.867 Atomic orbital electron populations 1.69899 1.06866 1.24883 1.63507 1.25321 0.95878 1.00051 1.06195 0.85667 0.78354 0.81885 0.77508 1.20977 1.23742 1.18603 1.19220 0.82199 0.93447 1.33773 0.90324 1.42834 1.02639 1.02927 1.88995 1.20411 0.92616 0.85844 0.92118 1.22720 0.81895 0.98463 0.97666 1.86972 1.22424 1.78423 1.49726 1.21722 0.91917 1.02380 0.99059 1.21953 1.02554 0.97988 0.94539 1.23121 0.78731 1.01543 1.01379 1.47816 1.11115 1.54715 1.16752 1.18348 0.85431 0.78761 0.83974 1.90842 1.16869 1.55158 1.81985 1.21145 0.90561 0.99605 0.94984 1.22165 1.02114 0.96179 0.92957 1.21809 0.94384 0.95440 0.96948 1.22393 0.94374 1.01212 0.91761 1.98410 1.84284 1.83543 1.33888 1.23607 1.02469 0.92284 0.86431 1.67750 1.11621 1.15120 1.20220 1.22014 0.99993 0.94166 0.85107 0.94684 0.80868 0.93773 0.91460 0.78126 0.87693 0.90703 0.87163 0.94835 0.89322 0.83979 0.84026 0.80436 0.77372 0.93097 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -1.00 -69.82 13.97 21.65 0.30 -69.52 16 2 C -0.09 -5.53 5.50 84.86 0.47 -5.06 16 3 Si 0.93 49.56 27.74 68.60 1.90 51.46 16 4 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 5 H -0.31 -16.97 7.11 99.48 0.71 -16.27 16 6 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 7 C -0.15 -9.24 8.55 84.03 0.72 -8.52 16 8 H 0.08 5.31 5.49 -2.91 -0.02 5.30 16 9 N -0.73 -34.56 4.56 -302.97 -1.38 -35.94 16 10 C 0.18 6.48 0.68 3.68 0.00 6.48 16 11 C 0.07 2.37 6.09 71.98 0.44 2.81 16 12 O -0.57 -23.36 10.05 -148.98 -1.50 -24.86 16 13 C -0.11 -2.81 4.76 30.62 0.15 -2.66 16 14 C -0.13 -3.26 5.91 30.67 0.18 -3.07 16 15 C 0.07 1.88 5.87 86.36 0.51 2.39 16 16 N -0.57 -20.64 2.90 -821.94 -2.39 -23.02 16 17 C 0.55 22.68 7.65 86.86 0.66 23.34 16 18 O -0.57 -29.76 15.79 -3.82 -0.06 -29.82 16 19 C 0.07 2.32 6.58 41.89 0.28 2.60 16 20 C -0.11 -3.21 9.63 22.61 0.22 -2.99 16 21 C -0.06 -1.18 9.97 22.47 0.22 -0.96 16 22 C -0.07 -1.16 6.35 22.51 0.14 -1.01 16 23 Cl -0.03 -0.40 28.99 -2.72 -0.08 -0.48 16 24 C 0.11 1.90 10.98 84.86 0.93 2.83 16 25 N -0.43 -10.46 6.13 -184.83 -1.13 -11.59 16 26 C 0.11 4.25 4.92 86.36 0.42 4.68 16 27 H 0.24 16.53 8.31 -92.70 -0.77 15.76 16 28 H 0.36 16.68 4.29 -92.71 -0.40 16.29 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.37 11.47 9.12 -74.06 -0.68 10.79 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.03 1.07 6.75 -2.39 -0.02 1.05 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.14 3.55 4.04 -64.98 -0.26 3.29 16 38 H 0.14 4.48 7.67 -2.91 -0.02 4.46 16 39 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.05 2.56 5.81 -2.39 -0.01 2.54 16 42 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -89.14 348.90 0.72 -88.42 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.30 Total: 34.52 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 5.34 Total: 20.84 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -4.60 Total: -140.07 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -1.56 Total: -54.68 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.90 Total: 51.46 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -89.14 0.72 -88.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570294330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.816 kcal (2) G-P(sol) polarization free energy of solvation -89.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds