Wall clock time and date at job start Tue Mar 31 2020 22:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47187 * 274.01301 * 3 2 1 5 5 H 1.48501 * 109.46834 * 34.01227 * 3 2 1 6 6 H 1.48500 * 109.47106 * 154.01140 * 3 2 1 7 7 C 1.38808 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99739 * 4.60512 * 7 2 1 9 9 N 1.36936 * 120.00390 * 184.60489 * 7 2 1 10 10 C 1.46504 * 120.00262 * 184.97271 * 9 7 2 11 11 C 1.52996 * 109.47300 * 184.89061 * 10 9 7 12 12 N 1.46503 * 109.54380 * 54.86228 * 11 10 9 13 13 C 1.34772 * 119.99440 * 57.33012 * 12 11 10 14 14 O 1.21527 * 120.00422 * 5.13561 * 13 12 11 15 15 C 1.48082 * 119.99848 * 185.14411 * 13 12 11 16 16 C 1.39869 * 120.93121 * 354.61400 * 15 13 12 17 17 C 1.38075 * 119.02035 * 179.97438 * 16 15 13 18 18 N 1.31846 * 120.94112 * 359.73001 * 17 16 15 19 19 C 1.31762 * 122.06823 * 0.56493 * 18 17 16 20 20 C 1.38356 * 120.87412 * 359.43318 * 19 18 17 21 21 Cl 1.73595 * 120.52392 * 180.29509 * 20 19 18 22 22 C 1.53174 * 109.54629 * 175.04310 * 11 10 9 23 23 C 1.53274 * 109.06557 * 176.85024 * 22 11 10 24 24 O 1.42904 * 109.46402 * 302.44589 * 23 22 11 25 25 C 1.42905 * 114.09786 * 61.15788 * 24 23 22 26 26 C 1.53093 * 109.41212 * 298.84595 * 25 24 23 27 27 H 0.96994 * 120.00314 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99927 * 4.97357 * 9 7 2 29 29 H 1.09003 * 109.47036 * 64.88742 * 10 9 7 30 30 H 1.08997 * 109.46940 * 304.88869 * 10 9 7 31 31 H 0.96995 * 120.00417 * 237.32661 * 12 11 10 32 32 H 1.08008 * 120.48740 * 359.96336 * 16 15 13 33 33 H 1.07998 * 119.52840 * 180.02562 * 17 16 15 34 34 H 1.08005 * 119.56070 * 179.70616 * 19 18 17 35 35 H 1.08995 * 109.52029 * 296.84465 * 22 11 10 36 36 H 1.09003 * 109.51920 * 57.03275 * 22 11 10 37 37 H 1.09000 * 109.45902 * 182.44935 * 23 22 11 38 38 H 1.09001 * 109.46906 * 62.45235 * 23 22 11 39 39 H 1.08997 * 109.48444 * 178.86160 * 25 24 23 40 40 H 1.09002 * 109.49299 * 58.82708 * 25 24 23 41 41 H 1.09006 * 109.52508 * 297.70019 * 26 25 24 42 42 H 1.09003 * 109.57287 * 177.54802 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4129 2.0954 -1.3966 5 1 1.4926 2.6267 0.7832 6 1 3.5876 1.4172 0.6135 7 6 2.0103 -1.2021 0.0005 8 1 1.4729 -2.1359 -0.0741 9 7 3.3763 -1.2040 0.0957 10 6 4.1165 -2.4636 -0.0131 11 6 5.6020 -2.2064 0.2477 12 7 5.7642 -1.5417 1.5432 13 6 5.2888 -2.1224 2.6626 14 8 4.8094 -3.2379 2.6119 15 6 5.3504 -1.4010 3.9543 16 6 5.9970 -0.1650 4.0574 17 6 6.0303 0.4735 5.2812 18 7 5.4593 -0.0631 6.3416 19 6 4.8445 -1.2274 6.2912 20 6 4.7629 -1.9365 5.1059 21 17 3.9441 -3.4661 5.0481 22 6 6.3588 -3.5381 0.2567 23 6 7.8553 -3.2622 0.4400 24 8 8.3127 -2.4025 -0.6058 25 6 7.6721 -1.1253 -0.6333 26 6 6.1699 -1.3143 -0.8605 27 1 -0.4850 0.8400 -0.0004 28 1 3.8539 -0.3713 0.2353 29 1 3.9893 -2.8744 -1.0147 30 1 3.7362 -3.1731 0.7216 31 1 6.2138 -0.6838 1.5952 32 1 6.4636 0.2831 3.1926 33 1 6.5270 1.4283 5.3701 34 1 4.3946 -1.6316 7.1860 35 1 5.9970 -4.1570 1.0777 36 1 6.1973 -4.0552 -0.6892 37 1 8.4050 -4.2028 0.4038 38 1 8.0207 -2.7815 1.4042 39 1 8.0896 -0.5265 -1.4427 40 1 7.8347 -0.6163 0.3168 41 1 6.0045 -1.7866 -1.8289 42 1 5.6725 -0.3447 -0.8385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570307475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:31 Heat of formation + Delta-G solvation = -18.651416 kcal Electronic energy + Delta-G solvation = -28616.889294 eV Core-core repulsion = 24624.046792 eV Total energy + Delta-G solvation = -3992.842502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05918 -40.11301 -38.35991 -36.57947 -35.95532 -33.94277 -33.16947 -31.51940 -31.22395 -31.18559 -30.76657 -27.00082 -25.15028 -23.83783 -23.78829 -23.29973 -21.50357 -21.24350 -19.32020 -18.57138 -17.80670 -16.91187 -16.39342 -16.18142 -16.08825 -15.59650 -15.46803 -15.17272 -14.67376 -14.52344 -14.32926 -14.08720 -13.90716 -13.70938 -13.25859 -12.87003 -12.62832 -12.56187 -12.38415 -12.05603 -11.95268 -11.86642 -11.37296 -11.22729 -11.15371 -10.97101 -10.69087 -10.47532 -10.24785 -10.15001 -10.04338 -9.69922 -9.62075 -9.30007 -9.14822 -8.87731 -8.81782 -7.21404 -5.77819 -3.12269 0.42697 0.66333 2.00517 2.82681 3.04365 3.23225 3.31460 3.38295 3.58750 3.79167 4.10348 4.32582 4.37111 4.54072 4.56017 4.62417 4.79532 4.86089 4.89512 4.95751 5.07939 5.21616 5.27705 5.41761 5.51262 5.52212 5.56162 5.58699 5.66334 5.84328 5.86170 5.97435 6.10593 6.12662 6.22054 6.32954 6.68592 6.84229 7.09590 7.49197 7.51760 8.00494 8.24313 8.40922 9.20310 9.91733 10.12282 11.40969 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.006204 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.507857 B = 4511.773346 C = 6213.575968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.089 0.911 9 N -0.750 5.750 10 C 0.147 3.853 11 C 0.172 3.828 12 N -0.710 5.710 13 C 0.563 3.437 14 O -0.493 6.493 15 C -0.075 4.075 16 C -0.132 4.132 17 C 0.095 3.905 18 N -0.457 5.457 19 C 0.108 3.892 20 C -0.041 4.041 21 Cl -0.011 7.011 22 C -0.163 4.163 23 C 0.066 3.934 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.158 4.158 27 H 0.258 0.742 28 H 0.358 0.642 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.392 0.608 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.804 -1.824 7.688 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.365 4.365 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.019 3.981 11 C 0.087 3.913 12 N -0.363 5.363 13 C 0.347 3.653 14 O -0.366 6.366 15 C -0.086 4.086 16 C -0.153 4.153 17 C -0.061 4.061 18 N -0.167 5.167 19 C -0.051 4.051 20 C -0.072 4.072 21 Cl 0.018 6.982 22 C -0.202 4.202 23 C -0.011 4.011 24 O -0.302 6.302 25 C -0.016 4.016 26 C -0.196 4.196 27 H 0.069 0.931 28 H 0.192 0.808 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.286 -2.481 8.232 20.207 hybrid contribution 0.242 1.437 -0.598 1.575 sum 18.528 -1.044 7.633 20.066 Atomic orbital electron populations 1.69701 1.05028 1.25592 1.57795 1.24672 0.95191 0.96952 1.02439 0.86538 0.78687 0.85504 0.77557 1.21185 1.21849 1.21026 1.19044 0.80876 0.94667 1.41925 0.89329 1.42635 1.04348 1.03379 1.89214 1.21062 0.87139 0.90576 0.99346 1.20701 0.97318 0.92062 0.81217 1.45867 1.59805 1.24037 1.06618 1.17748 0.78646 0.85974 0.82883 1.90809 1.42341 1.18083 1.85409 1.20407 0.98390 0.95447 0.94404 1.22358 0.98963 0.93911 1.00067 1.22803 0.95917 0.99698 0.87670 1.67671 1.07166 1.10122 1.31697 1.22856 0.95896 0.90086 0.96221 1.22271 0.98133 0.91800 0.94950 1.98442 1.75689 1.25603 1.98454 1.22598 0.95131 0.97651 1.04838 1.22559 0.94373 0.94192 0.89992 1.87918 1.62981 1.26104 1.53165 1.22587 0.92252 0.85486 1.01238 1.22481 0.95842 1.01638 0.99603 0.93144 0.80832 0.95073 0.92509 0.77288 0.83888 0.81539 0.81222 0.88326 0.90007 0.89031 0.93571 0.88625 0.93760 0.88835 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 21.76 27.99 -169.99 -4.76 17.00 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.27 6.17 56.52 0.35 -5.92 16 7 C -0.24 -6.66 10.47 -15.06 -0.16 -6.82 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 N -0.75 -17.26 4.99 -59.91 -0.30 -17.55 16 10 C 0.15 2.84 4.83 -4.04 -0.02 2.82 16 11 C 0.17 2.49 0.32 -131.64 -0.04 2.45 16 12 N -0.71 -9.67 3.72 -48.30 -0.18 -9.85 16 13 C 0.56 8.73 7.19 -12.22 -0.09 8.64 16 14 O -0.49 -8.85 10.48 5.34 0.06 -8.80 16 15 C -0.07 -1.03 5.91 -104.62 -0.62 -1.65 16 16 C -0.13 -1.42 9.61 -39.03 -0.38 -1.80 16 17 C 0.10 0.97 11.17 -17.60 -0.20 0.77 16 18 N -0.46 -5.45 10.33 -13.27 -0.14 -5.59 16 19 C 0.11 1.29 10.99 -17.54 -0.19 1.09 16 20 C -0.04 -0.57 6.38 -38.91 -0.25 -0.82 16 21 Cl -0.01 -0.17 26.25 -51.86 -1.36 -1.53 16 22 C -0.16 -2.12 4.81 -26.50 -0.13 -2.25 16 23 C 0.07 0.74 6.68 37.30 0.25 0.98 16 24 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 25 C 0.06 0.64 6.67 37.21 0.25 0.88 16 26 C -0.16 -2.00 4.81 -26.59 -0.13 -2.12 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.36 7.88 4.24 -40.82 -0.17 7.71 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.24 6.32 -51.93 -0.33 0.92 16 31 H 0.39 4.35 5.60 -40.82 -0.23 4.12 16 32 H 0.14 1.12 6.56 -52.48 -0.34 0.77 16 33 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.10 1.43 6.15 -51.93 -0.32 1.11 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.40 7.04 -51.93 -0.37 0.03 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.13 7.19 -51.93 -0.37 0.75 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -34.45 348.27 -7.93 -42.39 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.10 Total: 10.19 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.79 Total: 2.18 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.16 Total: -61.70 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.32 Total: -13.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.76 Total: 17.00 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.36 Total: -1.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.45 -7.93 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570307475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.735 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds