Wall clock time and date at job start Tue Mar 31 2020 22:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47187 * 274.01301 * 3 2 1 5 5 H 1.48501 * 109.46834 * 34.01227 * 3 2 1 6 6 H 1.48500 * 109.47106 * 154.01140 * 3 2 1 7 7 C 1.38808 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99739 * 4.60512 * 7 2 1 9 9 N 1.36936 * 120.00390 * 184.60489 * 7 2 1 10 10 C 1.46504 * 120.00262 * 184.97271 * 9 7 2 11 11 C 1.52996 * 109.47300 * 184.89061 * 10 9 7 12 12 N 1.46503 * 109.54380 * 54.86228 * 11 10 9 13 13 C 1.34772 * 119.99440 * 57.33012 * 12 11 10 14 14 O 1.21527 * 120.00422 * 5.13561 * 13 12 11 15 15 C 1.48082 * 119.99848 * 185.14411 * 13 12 11 16 16 C 1.39869 * 120.93121 * 354.61400 * 15 13 12 17 17 C 1.38075 * 119.02035 * 179.97438 * 16 15 13 18 18 N 1.31846 * 120.94112 * 359.73001 * 17 16 15 19 19 C 1.31762 * 122.06823 * 0.56493 * 18 17 16 20 20 C 1.38356 * 120.87412 * 359.43318 * 19 18 17 21 21 Cl 1.73595 * 120.52392 * 180.29509 * 20 19 18 22 22 C 1.53174 * 109.54629 * 175.04310 * 11 10 9 23 23 C 1.53274 * 109.06557 * 176.85024 * 22 11 10 24 24 O 1.42904 * 109.46402 * 302.44589 * 23 22 11 25 25 C 1.42905 * 114.09786 * 61.15788 * 24 23 22 26 26 C 1.53093 * 109.41212 * 298.84595 * 25 24 23 27 27 H 0.96994 * 120.00314 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99927 * 4.97357 * 9 7 2 29 29 H 1.09003 * 109.47036 * 64.88742 * 10 9 7 30 30 H 1.08997 * 109.46940 * 304.88869 * 10 9 7 31 31 H 0.96995 * 120.00417 * 237.32661 * 12 11 10 32 32 H 1.08008 * 120.48740 * 359.96336 * 16 15 13 33 33 H 1.07998 * 119.52840 * 180.02562 * 17 16 15 34 34 H 1.08005 * 119.56070 * 179.70616 * 19 18 17 35 35 H 1.08995 * 109.52029 * 296.84465 * 22 11 10 36 36 H 1.09003 * 109.51920 * 57.03275 * 22 11 10 37 37 H 1.09000 * 109.45902 * 182.44935 * 23 22 11 38 38 H 1.09001 * 109.46906 * 62.45235 * 23 22 11 39 39 H 1.08997 * 109.48444 * 178.86160 * 25 24 23 40 40 H 1.09002 * 109.49299 * 58.82708 * 25 24 23 41 41 H 1.09006 * 109.52508 * 297.70019 * 26 25 24 42 42 H 1.09003 * 109.57287 * 177.54802 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4129 2.0954 -1.3966 5 1 1.4926 2.6267 0.7832 6 1 3.5876 1.4172 0.6135 7 6 2.0103 -1.2021 0.0005 8 1 1.4729 -2.1359 -0.0741 9 7 3.3763 -1.2040 0.0957 10 6 4.1165 -2.4636 -0.0131 11 6 5.6020 -2.2064 0.2477 12 7 5.7642 -1.5417 1.5432 13 6 5.2888 -2.1224 2.6626 14 8 4.8094 -3.2379 2.6119 15 6 5.3504 -1.4010 3.9543 16 6 5.9970 -0.1650 4.0574 17 6 6.0303 0.4735 5.2812 18 7 5.4593 -0.0631 6.3416 19 6 4.8445 -1.2274 6.2912 20 6 4.7629 -1.9365 5.1059 21 17 3.9441 -3.4661 5.0481 22 6 6.3588 -3.5381 0.2567 23 6 7.8553 -3.2622 0.4400 24 8 8.3127 -2.4025 -0.6058 25 6 7.6721 -1.1253 -0.6333 26 6 6.1699 -1.3143 -0.8605 27 1 -0.4850 0.8400 -0.0004 28 1 3.8539 -0.3713 0.2353 29 1 3.9893 -2.8744 -1.0147 30 1 3.7362 -3.1731 0.7216 31 1 6.2138 -0.6838 1.5952 32 1 6.4636 0.2831 3.1926 33 1 6.5270 1.4283 5.3701 34 1 4.3946 -1.6316 7.1860 35 1 5.9970 -4.1570 1.0777 36 1 6.1973 -4.0552 -0.6892 37 1 8.4050 -4.2028 0.4038 38 1 8.0207 -2.7815 1.4042 39 1 8.0896 -0.5265 -1.4427 40 1 7.8347 -0.6163 0.3168 41 1 6.0045 -1.7866 -1.8289 42 1 5.6725 -0.3447 -0.8385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570307475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:30 Heat of formation + Delta-G solvation = -44.045826 kcal Electronic energy + Delta-G solvation = -28617.990478 eV Core-core repulsion = 24624.046792 eV Total energy + Delta-G solvation = -3993.943686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12708 -41.06334 -39.39497 -37.64338 -37.32186 -35.59514 -34.33437 -33.16429 -32.31136 -32.13123 -31.98381 -28.53379 -26.20945 -25.17050 -24.74600 -24.45207 -23.04732 -22.32560 -20.55857 -19.80099 -19.56514 -17.86337 -17.35931 -17.15610 -16.99844 -16.74764 -16.61036 -16.41382 -16.30008 -15.64537 -15.29972 -15.16818 -15.12581 -15.02911 -14.77393 -14.45865 -13.93893 -13.78982 -13.43683 -13.24851 -13.17620 -13.01924 -12.88452 -12.84416 -12.34982 -12.23352 -12.11742 -11.88138 -11.71820 -11.46440 -11.16781 -11.02740 -10.97415 -10.64741 -10.35556 -10.09605 -9.98659 -9.28642 -8.04044 -5.37743 -0.54681 -0.19454 0.99475 1.27314 1.39173 1.45335 1.73505 1.98270 2.45771 2.63529 2.95756 3.24926 3.32019 3.35415 3.45608 3.52219 3.68464 3.69922 3.79276 3.92541 4.05379 4.08518 4.25304 4.38007 4.45737 4.50804 4.62361 4.70921 4.72550 4.78351 4.82195 4.84237 5.03470 5.08958 5.11341 5.17470 5.32892 5.50178 5.73728 6.17944 6.24874 6.43437 6.65168 7.06095 7.13305 7.78772 8.04036 9.18121 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.006204 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.507857 B = 4511.773346 C = 6213.575968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.239 1.239 7 C -0.231 4.231 8 H 0.040 0.960 9 N -0.741 5.741 10 C 0.147 3.853 11 C 0.181 3.819 12 N -0.700 5.700 13 C 0.555 3.445 14 O -0.527 6.527 15 C -0.098 4.098 16 C -0.123 4.123 17 C 0.103 3.897 18 N -0.469 5.469 19 C 0.107 3.893 20 C -0.063 4.063 21 Cl -0.036 7.036 22 C -0.158 4.158 23 C 0.073 3.927 24 O -0.392 6.392 25 C 0.063 3.937 26 C -0.154 4.154 27 H 0.257 0.743 28 H 0.368 0.632 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.408 0.592 32 H 0.179 0.821 33 H 0.209 0.791 34 H 0.187 0.813 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.695 1.240 7.893 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.163 1.163 7 C -0.363 4.363 8 H 0.058 0.942 9 N -0.388 5.388 10 C 0.019 3.981 11 C 0.095 3.905 12 N -0.354 5.354 13 C 0.341 3.659 14 O -0.403 6.403 15 C -0.110 4.110 16 C -0.143 4.143 17 C -0.053 4.053 18 N -0.178 5.178 19 C -0.050 4.050 20 C -0.093 4.093 21 Cl -0.007 7.007 22 C -0.197 4.197 23 C -0.003 4.003 24 O -0.310 6.310 25 C -0.014 4.014 26 C -0.192 4.192 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.246 0.754 32 H 0.196 0.804 33 H 0.225 0.775 34 H 0.204 0.796 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.247 0.573 8.442 23.802 hybrid contribution -1.029 0.411 -0.654 1.287 sum 21.218 0.985 7.788 22.623 Atomic orbital electron populations 1.69926 1.07486 1.26682 1.59607 1.25617 0.96181 1.01615 1.02488 0.85317 0.78969 0.78843 0.78067 1.20263 1.22590 1.16328 1.18920 0.83206 0.93018 1.41112 0.94153 1.42426 1.02417 1.05032 1.88908 1.21087 0.90515 0.88494 0.97967 1.20500 0.93692 0.93759 0.82519 1.45739 1.59462 1.24543 1.05692 1.18145 0.78085 0.85771 0.83866 1.90804 1.43757 1.19716 1.86025 1.20486 1.00108 0.96989 0.93398 1.22751 0.97638 0.92264 1.01675 1.23529 0.94460 1.00608 0.86746 1.67774 1.07490 1.09883 1.32685 1.23100 0.95700 0.90067 0.96155 1.22469 0.99322 0.91459 0.96081 1.98427 1.76395 1.27345 1.98541 1.22523 0.96666 0.96504 1.04024 1.22529 0.92520 0.95048 0.90245 1.87925 1.62955 1.26825 1.53340 1.22737 0.90022 0.85214 1.03385 1.22475 0.97817 1.00689 0.98262 0.93425 0.79691 0.95672 0.95625 0.75394 0.80418 0.77452 0.79634 0.90233 0.90165 0.87678 0.92803 0.86422 0.91489 0.89348 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.37 13.97 21.65 0.30 -64.07 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 43.89 27.99 68.60 1.92 45.81 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.24 -9.03 6.17 99.48 0.61 -8.41 16 7 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 9 N -0.74 -33.95 4.99 -343.45 -1.71 -35.66 16 10 C 0.15 5.80 4.83 86.38 0.42 6.22 16 11 C 0.18 4.99 0.32 3.72 0.00 4.99 16 12 N -0.70 -17.40 3.72 -425.00 -1.58 -18.99 16 13 C 0.56 16.79 7.19 86.86 0.62 17.42 16 14 O -0.53 -19.57 10.48 -3.80 -0.04 -19.60 16 15 C -0.10 -2.56 5.91 -19.86 -0.12 -2.68 16 16 C -0.12 -2.14 9.61 22.63 0.22 -1.92 16 17 C 0.10 1.64 11.17 84.65 0.95 2.58 16 18 N -0.47 -9.86 10.33 -195.91 -2.02 -11.88 16 19 C 0.11 2.42 10.99 84.73 0.93 3.35 16 20 C -0.06 -1.73 6.38 22.71 0.14 -1.58 16 21 Cl -0.04 -1.13 26.25 -2.72 -0.07 -1.20 16 22 C -0.16 -3.98 4.81 30.74 0.15 -3.84 16 23 C 0.07 1.45 6.68 72.07 0.48 1.93 16 24 O -0.39 -7.97 10.77 -148.98 -1.60 -9.57 16 25 C 0.06 1.02 6.67 72.01 0.48 1.50 16 26 C -0.15 -3.44 4.81 30.69 0.15 -3.29 16 27 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 28 H 0.37 15.25 4.24 -92.71 -0.39 14.85 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.03 1.19 6.32 -2.39 -0.02 1.18 16 31 H 0.41 7.24 5.60 -92.71 -0.52 6.72 16 32 H 0.18 1.71 6.56 -2.91 -0.02 1.69 16 33 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.08 2.35 6.15 -2.39 -0.01 2.34 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 39 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 0.81 7.04 -2.39 -0.02 0.80 16 41 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.08 1.88 7.19 -2.39 -0.02 1.86 16 Total: -1.00 -79.67 348.27 1.03 -78.64 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.08 Total: 28.05 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.77 Total: 8.48 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -5.02 Total: -130.60 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.64 Total: -29.18 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.92 Total: 45.81 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -79.67 1.03 -78.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570307475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.590 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds