Wall clock time and date at job start Tue Mar 31 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47161 * 270.00188 * 3 2 1 5 5 H 1.48504 * 109.46756 * 30.00028 * 3 2 1 6 6 H 1.48500 * 109.47140 * 149.99736 * 3 2 1 7 7 C 1.37883 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99357 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47118 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47217 * 55.00736 * 12 11 10 14 14 N 1.46899 * 109.46932 * 294.99947 * 12 11 10 15 15 C 1.50703 * 109.47043 * 175.00077 * 12 11 10 16 16 O 1.21290 * 119.99769 * 99.99973 * 15 12 11 17 17 N 1.34777 * 120.00237 * 280.00120 * 15 12 11 18 18 C 1.40011 * 120.00010 * 175.50417 * 17 15 12 19 19 C 1.38555 * 120.00436 * 34.71293 * 18 17 15 20 20 C 1.39511 * 119.79203 * 179.79073 * 19 18 17 21 21 C 1.47795 * 120.09957 * 180.20564 * 20 19 18 22 22 N 1.34773 * 120.00282 * 180.29665 * 21 20 19 23 23 O 1.21562 * 120.00366 * 0.30246 * 21 20 19 24 24 C 1.39643 * 119.79893 * 0.50528 * 20 19 18 25 25 C 1.37932 * 120.00413 * 359.72849 * 24 20 19 26 26 C 1.38383 * 120.21326 * 0.02562 * 25 24 20 27 27 Cl 1.73593 * 119.90237 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47163 * 59.99675 * 9 7 2 30 30 H 1.09001 * 109.46667 * 299.99522 * 9 7 2 31 31 H 1.09009 * 109.47265 * 59.99867 * 10 9 7 32 32 H 1.08998 * 109.47360 * 299.99875 * 10 9 7 33 33 H 1.08999 * 109.46841 * 59.99982 * 11 10 9 34 34 H 1.09004 * 109.47583 * 300.00159 * 11 10 9 35 35 H 1.00899 * 111.00722 * 299.99871 * 14 12 11 36 36 H 1.00898 * 110.99626 * 63.95979 * 14 12 11 37 37 H 0.97001 * 119.99605 * 355.50099 * 17 15 12 38 38 H 1.08004 * 120.09879 * 0.02562 * 19 18 17 39 39 H 0.97006 * 119.99828 * 0.02562 * 22 21 20 40 40 H 0.97004 * 120.00398 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.99655 * 179.69971 * 24 20 19 42 42 H 1.08004 * 119.89253 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0005 13 1 3.1591 -6.0432 0.8419 14 7 3.2366 -6.1419 -1.2553 15 6 1.7251 -7.4516 0.1250 16 8 1.5121 -8.1254 -0.8608 17 7 1.2916 -7.8670 1.3317 18 6 0.5148 -9.0272 1.4351 19 6 0.7482 -10.0955 0.5841 20 6 -0.0256 -11.2511 0.6940 21 6 0.2205 -12.3964 -0.2072 22 7 -0.5321 -13.5095 -0.1033 23 8 1.1018 -12.3344 -1.0422 24 6 -1.0375 -11.3201 1.6539 25 6 -1.2658 -10.2499 2.4936 26 6 -0.4951 -9.1054 2.3883 27 17 -0.7898 -7.7630 3.4487 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8719 -3.6044 0.8906 32 1 2.8718 -3.6045 -0.8894 33 1 0.8533 -5.0450 -0.8886 34 1 0.8538 -5.0446 0.8914 35 1 2.6238 -6.2398 -2.0509 36 1 3.7983 -5.3072 -1.3319 37 1 1.5179 -7.3621 2.1284 38 1 1.5292 -10.0350 -0.1594 39 1 -1.2356 -13.5589 0.5627 40 1 -0.3709 -14.2611 -0.6951 41 1 -1.6416 -12.2113 1.7385 42 1 -2.0486 -10.3054 3.2356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:01 Heat of formation + Delta-G solvation = -69.747853 kcal Electronic energy + Delta-G solvation = -26056.673028 eV Core-core repulsion = 22061.614819 eV Total energy + Delta-G solvation = -3995.058209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07650 -39.93551 -38.55620 -36.79791 -36.18348 -35.13054 -34.04406 -33.40790 -31.34202 -31.26123 -30.21073 -27.85692 -25.60264 -24.63835 -23.50264 -22.34261 -21.01298 -20.35859 -20.20412 -18.88560 -17.66989 -17.37158 -16.90520 -16.68491 -16.36226 -15.56951 -15.33667 -15.03758 -14.92486 -14.62961 -14.48814 -14.43120 -14.09979 -13.89760 -13.70062 -13.28113 -12.89748 -12.54780 -12.38933 -12.10104 -11.87441 -11.82642 -11.34672 -11.27394 -10.86295 -10.80961 -10.74611 -10.59178 -10.43855 -10.10477 -9.93180 -9.81570 -9.44681 -9.25775 -9.17365 -8.60366 -8.55253 -8.40080 -6.05040 -4.08127 0.22444 0.80870 1.67014 2.25407 2.55486 2.68879 3.09506 3.28530 3.35067 3.37826 3.38366 4.25480 4.35613 4.40957 4.47699 4.53006 4.73156 4.84116 4.87675 5.11010 5.20774 5.30832 5.34581 5.54980 5.64068 5.68698 5.78374 5.88847 5.94001 6.19354 6.35779 6.44000 6.51857 6.68245 6.90021 6.96604 6.98250 7.20556 7.53170 7.59956 7.72233 7.86577 7.93753 7.94002 8.35378 8.98959 9.56481 11.06128 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002314 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.949776 B =12098.850319 C =13263.326990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.148 4.148 12 C 0.079 3.921 13 H 0.104 0.896 14 N -0.829 5.829 15 C 0.525 3.475 16 O -0.504 6.504 17 N -0.674 5.674 18 C 0.159 3.841 19 C -0.052 4.052 20 C -0.119 4.119 21 C 0.564 3.436 22 N -0.851 5.851 23 O -0.527 6.527 24 C -0.095 4.095 25 C -0.098 4.098 26 C -0.044 4.044 27 Cl -0.049 7.049 28 H 0.261 0.739 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.351 0.649 36 H 0.355 0.645 37 H 0.416 0.584 38 H 0.165 0.835 39 H 0.400 0.600 40 H 0.406 0.594 41 H 0.136 0.864 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -26.564 7.747 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.188 4.188 12 C -0.036 4.036 13 H 0.122 0.878 14 N -0.362 5.362 15 C 0.313 3.687 16 O -0.377 6.377 17 N -0.320 5.320 18 C 0.063 3.937 19 C -0.073 4.073 20 C -0.123 4.123 21 C 0.350 3.650 22 N -0.416 5.416 23 O -0.403 6.403 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.073 4.073 27 Cl -0.020 7.020 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.254 0.746 38 H 0.183 0.817 39 H 0.230 0.770 40 H 0.237 0.763 41 H 0.154 0.846 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.790 -27.165 6.871 28.159 hybrid contribution -0.566 1.925 0.513 2.071 sum -3.356 -25.240 7.384 26.511 Atomic orbital electron populations 1.69961 1.06082 1.26673 1.50674 1.25039 0.94854 0.99334 0.95271 0.86592 0.79830 0.83432 0.78144 1.20636 1.21217 1.19856 1.21233 0.93003 0.91034 1.50799 0.92662 1.19077 0.93913 0.91259 0.97254 1.21654 0.99149 0.93320 1.00469 1.22439 0.98274 0.94994 1.03068 1.21417 0.95578 0.90337 0.96264 0.87799 1.58683 1.28139 1.46319 1.03065 1.21088 0.78207 0.87483 0.81882 1.90706 1.54386 1.55770 1.36828 1.43649 1.52222 1.25102 1.11071 1.17384 0.92122 0.87721 0.96507 1.21465 0.99224 0.88700 0.97934 1.19833 0.98949 0.95176 0.98356 1.18146 0.81258 0.82602 0.83043 1.43721 1.38655 1.18077 1.41128 1.90879 1.31901 1.81581 1.35985 1.21159 0.97073 0.98700 0.94580 1.20805 0.99433 0.91227 1.00294 1.21093 0.97327 0.91916 0.97013 1.98415 1.95074 1.44604 1.63901 0.92958 0.96698 0.96592 0.92935 0.93219 0.91550 0.91397 0.83537 0.82959 0.74616 0.81737 0.77004 0.76262 0.84629 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.01 4.92 -26.73 -0.13 -2.15 16 11 C -0.15 -2.29 4.84 -26.73 -0.13 -2.42 16 12 C 0.08 1.05 3.21 -68.86 -0.22 0.83 16 13 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 14 N -0.83 -11.26 8.94 -5.65 -0.05 -11.31 16 15 C 0.53 7.35 6.92 -10.98 -0.08 7.27 16 16 O -0.50 -8.58 13.67 5.55 0.08 -8.51 16 17 N -0.67 -7.76 5.04 -9.86 -0.05 -7.81 16 18 C 0.16 1.84 6.30 -83.69 -0.53 1.31 16 19 C -0.05 -0.66 8.24 -38.99 -0.32 -0.98 16 20 C -0.12 -1.19 5.87 -104.99 -0.62 -1.81 16 21 C 0.56 5.91 8.04 -12.35 -0.10 5.81 16 22 N -0.85 -4.54 8.82 30.52 0.27 -4.27 16 23 O -0.53 -8.04 17.18 5.31 0.09 -7.94 16 24 C -0.10 -0.63 9.54 -39.17 -0.37 -1.00 16 25 C -0.10 -0.71 9.80 -39.64 -0.39 -1.10 16 26 C -0.04 -0.42 6.34 -39.21 -0.25 -0.67 16 27 Cl -0.05 -0.47 27.93 -51.86 -1.45 -1.92 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.35 4.96 8.58 -39.29 -0.34 4.62 16 36 H 0.35 4.49 7.55 -39.29 -0.30 4.20 16 37 H 0.42 3.92 8.07 -40.82 -0.33 3.59 16 38 H 0.17 2.54 5.79 -52.48 -0.30 2.24 16 39 H 0.40 0.81 6.86 -40.82 -0.28 0.53 16 40 H 0.41 1.70 8.93 -40.82 -0.36 1.34 16 41 H 0.14 0.35 6.39 -52.49 -0.34 0.01 16 42 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -35.59 371.29 -8.59 -44.18 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.10 Total: 9.28 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -3.68 Total: -7.74 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.91 Total: -49.33 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.17 Total: -16.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.45 Total: -1.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.59 -8.59 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.566 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds