Wall clock time and date at job start Tue Mar 31 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47161 * 270.00188 * 3 2 1 5 5 H 1.48504 * 109.46756 * 30.00028 * 3 2 1 6 6 H 1.48500 * 109.47140 * 149.99736 * 3 2 1 7 7 C 1.37883 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99357 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47118 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47217 * 55.00736 * 12 11 10 14 14 N 1.46899 * 109.46932 * 294.99947 * 12 11 10 15 15 C 1.50703 * 109.47043 * 175.00077 * 12 11 10 16 16 O 1.21290 * 119.99769 * 99.99973 * 15 12 11 17 17 N 1.34777 * 120.00237 * 280.00120 * 15 12 11 18 18 C 1.40011 * 120.00010 * 175.50417 * 17 15 12 19 19 C 1.38555 * 120.00436 * 34.71293 * 18 17 15 20 20 C 1.39511 * 119.79203 * 179.79073 * 19 18 17 21 21 C 1.47795 * 120.09957 * 180.20564 * 20 19 18 22 22 N 1.34773 * 120.00282 * 180.29665 * 21 20 19 23 23 O 1.21562 * 120.00366 * 0.30246 * 21 20 19 24 24 C 1.39643 * 119.79893 * 0.50528 * 20 19 18 25 25 C 1.37932 * 120.00413 * 359.72849 * 24 20 19 26 26 C 1.38383 * 120.21326 * 0.02562 * 25 24 20 27 27 Cl 1.73593 * 119.90237 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47163 * 59.99675 * 9 7 2 30 30 H 1.09001 * 109.46667 * 299.99522 * 9 7 2 31 31 H 1.09009 * 109.47265 * 59.99867 * 10 9 7 32 32 H 1.08998 * 109.47360 * 299.99875 * 10 9 7 33 33 H 1.08999 * 109.46841 * 59.99982 * 11 10 9 34 34 H 1.09004 * 109.47583 * 300.00159 * 11 10 9 35 35 H 1.00899 * 111.00722 * 299.99871 * 14 12 11 36 36 H 1.00898 * 110.99626 * 63.95979 * 14 12 11 37 37 H 0.97001 * 119.99605 * 355.50099 * 17 15 12 38 38 H 1.08004 * 120.09879 * 0.02562 * 19 18 17 39 39 H 0.97006 * 119.99828 * 0.02562 * 22 21 20 40 40 H 0.97004 * 120.00398 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.99655 * 179.69971 * 24 20 19 42 42 H 1.08004 * 119.89253 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1500 0.0005 13 1 3.1591 -6.0432 0.8419 14 7 3.2366 -6.1419 -1.2553 15 6 1.7251 -7.4516 0.1250 16 8 1.5121 -8.1254 -0.8608 17 7 1.2916 -7.8670 1.3317 18 6 0.5148 -9.0272 1.4351 19 6 0.7482 -10.0955 0.5841 20 6 -0.0256 -11.2511 0.6940 21 6 0.2205 -12.3964 -0.2072 22 7 -0.5321 -13.5095 -0.1033 23 8 1.1018 -12.3344 -1.0422 24 6 -1.0375 -11.3201 1.6539 25 6 -1.2658 -10.2499 2.4936 26 6 -0.4951 -9.1054 2.3883 27 17 -0.7898 -7.7630 3.4487 28 1 -0.4850 0.8400 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8719 -3.6044 0.8906 32 1 2.8718 -3.6045 -0.8894 33 1 0.8533 -5.0450 -0.8886 34 1 0.8538 -5.0446 0.8914 35 1 2.6238 -6.2398 -2.0509 36 1 3.7983 -5.3072 -1.3319 37 1 1.5179 -7.3621 2.1284 38 1 1.5292 -10.0350 -0.1594 39 1 -1.2356 -13.5589 0.5627 40 1 -0.3709 -14.2611 -0.6951 41 1 -1.6416 -12.2113 1.7385 42 1 -2.0486 -10.3054 3.2356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:01 Heat of formation + Delta-G solvation = -98.328652 kcal Electronic energy + Delta-G solvation = -26057.912384 eV Core-core repulsion = 22061.614819 eV Total energy + Delta-G solvation = -3996.297566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.98563 -40.83783 -39.41951 -37.61901 -37.43273 -36.09678 -35.30727 -34.76423 -33.03367 -32.03393 -31.04155 -29.38326 -27.08532 -25.40732 -24.81978 -23.54772 -21.92354 -21.75591 -21.32084 -19.62734 -18.70393 -18.47460 -18.10228 -17.62033 -17.51201 -16.58435 -16.50030 -16.35127 -16.17412 -15.90682 -15.57177 -15.37693 -15.01630 -14.92961 -14.69527 -14.40789 -14.28499 -13.71351 -13.67896 -13.57374 -13.10371 -12.94217 -12.61073 -12.59212 -12.41615 -12.38461 -12.09581 -11.70207 -11.51504 -11.42932 -11.30375 -11.26832 -10.86252 -10.77325 -10.56650 -10.00475 -9.74186 -9.40358 -8.20939 -6.32020 -0.52349 0.06043 0.92082 1.31782 1.40068 1.40776 1.51832 1.64500 1.80227 2.40117 2.43531 2.62953 3.12613 3.45691 3.58563 3.60334 3.78875 3.91136 3.95570 4.01168 4.09648 4.12337 4.35903 4.50771 4.66169 4.73287 4.83783 4.94108 4.98296 5.09220 5.14820 5.17883 5.22528 5.51376 5.58882 5.72046 5.83447 5.84454 5.95263 6.19952 6.22968 6.37585 6.44572 6.85999 6.92137 7.24625 7.37676 8.90731 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017398 B = 0.002314 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.949776 B =12098.850319 C =13263.326990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.023 3.977 10 C -0.094 4.094 11 C -0.135 4.135 12 C 0.089 3.911 13 H 0.129 0.871 14 N -0.831 5.831 15 C 0.524 3.476 16 O -0.541 6.541 17 N -0.664 5.664 18 C 0.136 3.864 19 C -0.077 4.077 20 C -0.130 4.130 21 C 0.560 3.440 22 N -0.821 5.821 23 O -0.588 6.588 24 C -0.069 4.069 25 C -0.090 4.090 26 C -0.045 4.045 27 Cl -0.049 7.049 28 H 0.263 0.737 29 H -0.016 1.016 30 H -0.008 1.008 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.346 0.654 36 H 0.360 0.640 37 H 0.425 0.575 38 H 0.127 0.873 39 H 0.420 0.580 40 H 0.415 0.585 41 H 0.187 0.813 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -27.770 9.686 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.175 4.175 12 C -0.026 4.026 13 H 0.147 0.853 14 N -0.364 5.364 15 C 0.312 3.688 16 O -0.416 6.416 17 N -0.311 5.311 18 C 0.040 3.960 19 C -0.099 4.099 20 C -0.134 4.134 21 C 0.346 3.654 22 N -0.386 5.386 23 O -0.469 6.469 24 C -0.089 4.089 25 C -0.108 4.108 26 C -0.075 4.075 27 Cl -0.020 7.020 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.010 0.990 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.265 0.735 38 H 0.145 0.855 39 H 0.254 0.746 40 H 0.247 0.753 41 H 0.204 0.796 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.353 -28.415 8.870 29.956 hybrid contribution -0.510 2.193 -0.035 2.252 sum -3.863 -26.222 8.835 27.939 Atomic orbital electron populations 1.70101 1.07860 1.27703 1.51853 1.26004 0.95743 1.03462 0.94880 0.85464 0.78776 0.78519 0.78400 1.20009 1.20955 1.18445 1.21723 0.93681 0.92254 1.50177 0.91788 1.19002 0.94485 0.93301 0.94589 1.21431 0.97934 0.92290 1.01506 1.22240 0.98282 0.94447 1.02502 1.21361 0.95210 0.89034 0.97027 0.85324 1.58695 1.28089 1.46589 1.03047 1.21155 0.78013 0.87443 0.82155 1.90704 1.55858 1.56852 1.38184 1.43478 1.51782 1.25223 1.10600 1.17466 0.93399 0.87424 0.97675 1.21239 0.99789 0.90651 0.98222 1.19924 0.99797 0.94235 0.99411 1.18343 0.80979 0.83695 0.82416 1.43483 1.37613 1.16588 1.40953 1.90853 1.34744 1.82771 1.38548 1.21639 0.95253 1.00035 0.91927 1.21290 0.99119 0.89972 1.00445 1.21258 0.97108 0.92760 0.96366 1.98418 1.94983 1.44922 1.63696 0.92873 0.99771 0.98952 0.91538 0.92422 0.93236 0.90982 0.84032 0.82331 0.73528 0.85541 0.74639 0.75251 0.79639 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 11 C -0.13 -4.21 4.84 30.59 0.15 -4.06 16 12 C 0.09 2.34 3.21 44.17 0.14 2.49 16 13 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 14 N -0.83 -22.68 8.94 -171.80 -1.54 -24.22 16 15 C 0.52 15.14 6.92 87.66 0.61 15.74 16 16 O -0.54 -19.55 13.67 -3.06 -0.04 -19.59 16 17 N -0.66 -15.54 5.04 -303.51 -1.53 -17.07 16 18 C 0.14 3.16 6.30 38.11 0.24 3.40 16 19 C -0.08 -2.04 8.24 22.65 0.19 -1.85 16 20 C -0.13 -2.49 5.87 -20.10 -0.12 -2.60 16 21 C 0.56 11.52 8.04 86.77 0.70 12.22 16 22 N -0.82 -6.81 8.82 -175.64 -1.55 -8.36 16 23 O -0.59 -18.94 17.18 -3.91 -0.07 -19.00 16 24 C -0.07 -0.66 9.54 22.54 0.21 -0.45 16 25 C -0.09 -0.97 9.80 22.23 0.22 -0.75 16 26 C -0.05 -0.80 6.34 22.51 0.14 -0.66 16 27 Cl -0.05 -0.86 27.93 -2.72 -0.08 -0.94 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.06 2.04 6.87 -2.39 -0.02 2.02 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.35 10.12 8.58 -89.69 -0.77 9.35 16 36 H 0.36 8.92 7.55 -89.70 -0.68 8.25 16 37 H 0.43 7.88 8.07 -92.71 -0.75 7.14 16 38 H 0.13 4.33 5.79 -2.91 -0.02 4.32 16 39 H 0.42 -0.04 6.86 -92.70 -0.64 -0.68 16 40 H 0.41 2.62 8.93 -92.71 -0.83 1.79 16 41 H 0.19 -0.17 6.39 -2.91 -0.02 -0.19 16 42 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -82.48 371.29 -1.54 -84.01 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -2.52 Total: 23.88 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 3.47 Total: -8.03 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.33 Total: -106.17 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.11 Total: -38.60 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -82.48 -1.54 -84.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.314 kcal (2) G-P(sol) polarization free energy of solvation -82.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds