Wall clock time and date at job start Tue Mar 31 2020 22:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99779 * 2 1 4 4 H 1.48508 * 109.46997 * 240.00345 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47044 * 120.00421 * 3 2 1 7 7 C 1.37880 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47325 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46967 * 305.00123 * 12 11 10 14 14 N 1.46907 * 109.47226 * 64.99668 * 12 11 10 15 15 C 1.50698 * 109.47270 * 184.99748 * 12 11 10 16 16 O 1.21284 * 120.00293 * 259.99831 * 15 12 11 17 17 N 1.34776 * 119.99669 * 80.00047 * 15 12 11 18 18 N 1.40107 * 119.99728 * 179.97438 * 17 15 12 19 19 C 1.34776 * 119.99728 * 179.97438 * 18 17 15 20 20 O 1.21557 * 120.00280 * 0.02562 * 19 18 17 21 21 C 1.47848 * 119.99910 * 180.02562 * 19 18 17 22 22 C 1.39594 * 120.13612 * 0.03751 * 21 19 18 23 23 C 1.37943 * 119.87924 * 179.97438 * 22 21 19 24 24 C 1.38364 * 120.16005 * 0.02562 * 23 22 21 25 25 C 1.38444 * 120.27969 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.94344 * 180.02562 * 25 24 23 27 27 C 1.38105 * 120.12030 * 359.97438 * 25 24 23 28 28 H 0.97006 * 120.00289 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47392 * 59.99715 * 9 7 2 30 30 H 1.09002 * 109.46915 * 299.99997 * 9 7 2 31 31 H 1.08998 * 109.46881 * 60.00073 * 10 9 7 32 32 H 1.08996 * 109.46761 * 299.99571 * 10 9 7 33 33 H 1.08993 * 109.47176 * 59.99576 * 11 10 9 34 34 H 1.09002 * 109.46920 * 299.99987 * 11 10 9 35 35 H 1.00902 * 110.99335 * 60.00324 * 14 12 11 36 36 H 1.00901 * 110.99881 * 183.95791 * 14 12 11 37 37 H 0.96997 * 120.00265 * 0.02562 * 17 15 12 38 38 H 0.96997 * 120.00007 * 359.97438 * 18 17 15 39 39 H 1.07998 * 120.06049 * 359.96643 * 22 21 19 40 40 H 1.08004 * 119.92222 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.86026 * 180.02562 * 24 23 22 42 42 H 1.07989 * 120.08317 * 179.74454 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4746 -6.1499 0.0008 13 1 3.1588 -6.0435 -0.8411 14 7 3.2377 -6.1411 1.2560 15 6 1.7253 -7.4516 -0.1224 16 8 1.5130 -8.1248 0.8639 17 7 1.2910 -7.8676 -1.3285 18 7 0.5948 -9.0781 -1.4431 19 6 0.1601 -9.4938 -2.6492 20 8 0.3725 -8.8189 -3.6376 21 6 -0.5750 -10.7709 -2.7701 22 6 -0.8212 -11.5478 -1.6367 23 6 -1.5081 -12.7381 -1.7555 24 6 -1.9528 -13.1634 -2.9948 25 6 -1.7123 -12.3981 -4.1231 26 17 -2.2747 -12.9398 -5.6736 27 6 -1.0266 -11.2040 -4.0174 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8534 -5.0451 -0.8895 34 1 0.8541 -5.0445 0.8903 35 1 2.6254 -6.2385 2.0521 36 1 3.9455 -6.8603 1.2540 37 1 1.4612 -7.3294 -2.1174 38 1 0.4257 -9.6168 -0.6544 39 1 -0.4744 -11.2176 -0.6687 40 1 -1.6993 -13.3396 -0.8791 41 1 -2.4905 -14.0960 -3.0822 42 1 -0.8358 -10.6095 -4.8985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:31 Heat of formation + Delta-G solvation = -35.508098 kcal Electronic energy + Delta-G solvation = -25285.294265 eV Core-core repulsion = 21291.720803 eV Total energy + Delta-G solvation = -3993.573462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06827 -40.05384 -38.84786 -36.98282 -36.13962 -35.55877 -33.40200 -32.70296 -31.62394 -31.40782 -30.68078 -27.94608 -25.51885 -24.42355 -23.28815 -22.60331 -21.76633 -20.63676 -20.06774 -18.76430 -18.24748 -17.30674 -16.51357 -16.34196 -16.17854 -15.93581 -15.78677 -15.50730 -15.07577 -14.69306 -14.44428 -14.43053 -14.40931 -14.06720 -13.91436 -13.09680 -12.60761 -12.44391 -12.15583 -12.11934 -11.85327 -11.74928 -11.53558 -11.51434 -11.20224 -10.83477 -10.73876 -10.68572 -10.45212 -10.42459 -9.76839 -9.63916 -9.44615 -9.25674 -9.08495 -8.78751 -8.71610 -8.29352 -5.94959 -3.96789 0.06917 0.51587 1.33515 1.60634 2.02786 2.38120 3.11688 3.37082 3.41153 3.43884 3.52172 3.99027 4.11323 4.30270 4.37595 4.45756 4.50527 4.62932 4.67055 4.82415 5.02264 5.15548 5.25840 5.40819 5.43707 5.52529 5.57117 5.85080 5.95640 6.01757 6.24219 6.31707 6.38222 6.77391 6.91990 6.98277 7.16015 7.21208 7.37363 7.45415 7.74015 7.89010 7.96724 8.06035 8.48982 9.10574 9.66951 11.16386 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.001750 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.592340 B =15998.623767 C =17075.059070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.107 4.107 12 C 0.091 3.909 13 H 0.108 0.892 14 N -0.804 5.804 15 C 0.484 3.516 16 O -0.550 6.550 17 N -0.519 5.519 18 N -0.519 5.519 19 C 0.559 3.441 20 O -0.527 6.527 21 C -0.113 4.113 22 C -0.082 4.082 23 C -0.110 4.110 24 C -0.082 4.082 25 C -0.043 4.043 26 Cl -0.058 7.058 27 C -0.047 4.047 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.353 0.647 36 H 0.341 0.659 37 H 0.436 0.564 38 H 0.430 0.570 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -31.348 -5.387 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.027 4.027 13 H 0.126 0.874 14 N -0.333 5.333 15 C 0.270 3.730 16 O -0.426 6.426 17 N -0.268 5.268 18 N -0.267 5.267 19 C 0.346 3.654 20 O -0.403 6.403 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.070 4.070 26 Cl -0.029 7.029 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.279 0.721 38 H 0.273 0.727 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.428 -30.497 -5.704 31.121 hybrid contribution -0.144 -0.191 -0.004 0.240 sum -2.573 -30.688 -5.708 31.321 Atomic orbital electron populations 1.69954 1.06055 1.26605 1.51062 1.25034 0.94839 0.99240 0.95473 0.86668 0.79568 0.83207 0.78602 1.20279 1.21398 1.20252 1.21231 0.93044 0.91072 1.50253 0.92669 1.19121 0.94097 0.91592 0.97001 1.21551 0.98822 0.92067 1.01343 1.21733 0.96509 0.93900 1.02353 1.21804 0.95824 0.89177 0.95887 0.87377 1.59078 1.17069 1.54105 1.03050 1.23272 0.79206 0.89384 0.81164 1.90689 1.58057 1.57264 1.36567 1.45427 1.55030 1.14062 1.12312 1.44737 1.55453 1.15533 1.10978 1.18200 0.79412 0.85733 0.82076 1.90851 1.57085 1.56115 1.36249 1.19521 1.02820 0.95092 0.94349 1.21480 0.96519 0.94279 0.97796 1.21116 0.97892 0.96301 0.97539 1.21352 0.98103 0.99618 0.91043 1.20826 1.02007 0.96297 0.87844 1.98403 1.87867 1.89524 1.27101 1.21147 0.93680 0.93929 0.97902 0.93039 0.96879 0.96762 0.91701 0.93449 0.91591 0.91623 0.83283 0.84695 0.72128 0.72704 0.84774 0.83931 0.84123 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -1.97 5.04 -26.73 -0.13 -2.10 16 11 C -0.11 -1.66 4.84 -26.73 -0.13 -1.79 16 12 C 0.09 1.11 3.15 -68.86 -0.22 0.90 16 13 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 14 N -0.80 -9.76 8.44 -5.65 -0.05 -9.81 16 15 C 0.48 5.90 7.18 -10.99 -0.08 5.82 16 16 O -0.55 -7.78 16.09 5.55 0.09 -7.69 16 17 N -0.52 -5.73 6.26 31.22 0.20 -5.54 16 18 N -0.52 -5.20 6.21 30.53 0.19 -5.01 16 19 C 0.56 5.94 7.89 -12.33 -0.10 5.84 16 20 O -0.53 -7.23 16.19 5.32 0.09 -7.15 16 21 C -0.11 -0.93 5.87 -104.97 -0.62 -1.55 16 22 C -0.08 -0.47 9.54 -39.18 -0.37 -0.84 16 23 C -0.11 -0.49 10.03 -39.64 -0.40 -0.89 16 24 C -0.08 -0.42 9.82 -39.46 -0.39 -0.81 16 25 C -0.04 -0.30 6.31 -39.55 -0.25 -0.55 16 26 Cl -0.06 -0.41 28.95 -51.86 -1.50 -1.91 16 27 C -0.05 -0.39 9.38 -39.14 -0.37 -0.75 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 1.31 7.75 -51.93 -0.40 0.90 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.35 4.41 8.58 -39.29 -0.34 4.08 16 36 H 0.34 3.47 9.06 -39.29 -0.36 3.11 16 37 H 0.44 4.58 8.00 -182.59 -1.46 3.12 16 38 H 0.43 3.64 6.03 -182.59 -1.10 2.54 16 39 H 0.13 0.53 6.40 -52.49 -0.34 0.19 16 40 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.15 1.31 7.65 -52.49 -0.40 0.91 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -34.29 379.38 -10.47 -44.77 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.32 Total: 6.17 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -3.60 Total: -9.91 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 1.07 Total: -46.84 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.18 Total: -14.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.29 -10.47 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.261 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds