Wall clock time and date at job start Tue Mar 31 2020 22:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99779 * 2 1 4 4 H 1.48508 * 109.46997 * 240.00345 * 3 2 1 5 5 H 1.48498 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47044 * 120.00421 * 3 2 1 7 7 C 1.37880 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46989 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47325 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46967 * 305.00123 * 12 11 10 14 14 N 1.46907 * 109.47226 * 64.99668 * 12 11 10 15 15 C 1.50698 * 109.47270 * 184.99748 * 12 11 10 16 16 O 1.21284 * 120.00293 * 259.99831 * 15 12 11 17 17 N 1.34776 * 119.99669 * 80.00047 * 15 12 11 18 18 N 1.40107 * 119.99728 * 179.97438 * 17 15 12 19 19 C 1.34776 * 119.99728 * 179.97438 * 18 17 15 20 20 O 1.21557 * 120.00280 * 0.02562 * 19 18 17 21 21 C 1.47848 * 119.99910 * 180.02562 * 19 18 17 22 22 C 1.39594 * 120.13612 * 0.03751 * 21 19 18 23 23 C 1.37943 * 119.87924 * 179.97438 * 22 21 19 24 24 C 1.38364 * 120.16005 * 0.02562 * 23 22 21 25 25 C 1.38444 * 120.27969 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.94344 * 180.02562 * 25 24 23 27 27 C 1.38105 * 120.12030 * 359.97438 * 25 24 23 28 28 H 0.97006 * 120.00289 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47392 * 59.99715 * 9 7 2 30 30 H 1.09002 * 109.46915 * 299.99997 * 9 7 2 31 31 H 1.08998 * 109.46881 * 60.00073 * 10 9 7 32 32 H 1.08996 * 109.46761 * 299.99571 * 10 9 7 33 33 H 1.08993 * 109.47176 * 59.99576 * 11 10 9 34 34 H 1.09002 * 109.46920 * 299.99987 * 11 10 9 35 35 H 1.00902 * 110.99335 * 60.00324 * 14 12 11 36 36 H 1.00901 * 110.99881 * 183.95791 * 14 12 11 37 37 H 0.96997 * 120.00265 * 0.02562 * 17 15 12 38 38 H 0.96997 * 120.00007 * 359.97438 * 18 17 15 39 39 H 1.07998 * 120.06049 * 359.96643 * 22 21 19 40 40 H 1.08004 * 119.92222 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.86026 * 180.02562 * 24 23 22 42 42 H 1.07989 * 120.08317 * 179.74454 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4746 -6.1499 0.0008 13 1 3.1588 -6.0435 -0.8411 14 7 3.2377 -6.1411 1.2560 15 6 1.7253 -7.4516 -0.1224 16 8 1.5130 -8.1248 0.8639 17 7 1.2910 -7.8676 -1.3285 18 7 0.5948 -9.0781 -1.4431 19 6 0.1601 -9.4938 -2.6492 20 8 0.3725 -8.8189 -3.6376 21 6 -0.5750 -10.7709 -2.7701 22 6 -0.8212 -11.5478 -1.6367 23 6 -1.5081 -12.7381 -1.7555 24 6 -1.9528 -13.1634 -2.9948 25 6 -1.7123 -12.3981 -4.1231 26 17 -2.2747 -12.9398 -5.6736 27 6 -1.0266 -11.2040 -4.0174 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6248 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 33 1 0.8534 -5.0451 -0.8895 34 1 0.8541 -5.0445 0.8903 35 1 2.6254 -6.2385 2.0521 36 1 3.9455 -6.8603 1.2540 37 1 1.4612 -7.3294 -2.1174 38 1 0.4257 -9.6168 -0.6544 39 1 -0.4744 -11.2176 -0.6687 40 1 -1.6993 -13.3396 -0.8791 41 1 -2.4905 -14.0960 -3.0822 42 1 -0.8358 -10.6095 -4.8985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:31 Heat of formation + Delta-G solvation = -60.033653 kcal Electronic energy + Delta-G solvation = -25286.357773 eV Core-core repulsion = 21291.720803 eV Total energy + Delta-G solvation = -3994.636970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89860 -40.87886 -39.55000 -37.50711 -37.32807 -36.61949 -35.26101 -33.45904 -33.12959 -32.13305 -31.35440 -29.51314 -26.88804 -25.35964 -24.18379 -23.66477 -22.61970 -21.83416 -21.42949 -19.55206 -19.11499 -18.43088 -18.10039 -17.22320 -17.04310 -16.78633 -16.67519 -16.46698 -16.10423 -16.05788 -15.64938 -15.40459 -15.16281 -14.84357 -14.57592 -14.47977 -14.28196 -13.67436 -13.15090 -13.05663 -12.87579 -12.69942 -12.63700 -12.52832 -12.48270 -12.42260 -12.21350 -12.08117 -11.73126 -11.52233 -11.37509 -11.23650 -10.99942 -10.50494 -10.28611 -9.94714 -9.82623 -9.60481 -8.16047 -6.26357 -0.47666 0.03619 0.54596 1.04072 1.14596 1.42067 1.45249 1.52904 1.58921 2.44116 2.56119 2.71555 3.17061 3.21151 3.50582 3.68488 3.72181 3.85972 3.93499 3.95676 4.12819 4.18242 4.35584 4.51190 4.64684 4.72738 4.92169 4.93906 5.07385 5.13624 5.14717 5.27399 5.34164 5.36852 5.45403 5.58740 5.62096 5.85861 5.95234 6.00587 6.26411 6.31438 6.46987 6.59468 6.91713 7.06925 7.42596 8.95467 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.001750 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.592340 B =15998.623767 C =17075.059070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.020 3.980 10 C -0.084 4.084 11 C -0.098 4.098 12 C 0.101 3.899 13 H 0.130 0.870 14 N -0.810 5.810 15 C 0.491 3.509 16 O -0.568 6.568 17 N -0.517 5.517 18 N -0.514 5.514 19 C 0.560 3.440 20 O -0.566 6.566 21 C -0.130 4.130 22 C -0.077 4.077 23 C -0.101 4.101 24 C -0.075 4.075 25 C -0.053 4.053 26 Cl -0.064 7.064 27 C -0.062 4.062 28 H 0.262 0.738 29 H -0.011 1.011 30 H -0.014 1.014 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.350 0.650 36 H 0.353 0.647 37 H 0.438 0.562 38 H 0.438 0.562 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -32.898 -4.651 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.122 4.122 11 C -0.137 4.137 12 C -0.017 4.017 13 H 0.148 0.852 14 N -0.340 5.340 15 C 0.277 3.723 16 O -0.445 6.445 17 N -0.266 5.266 18 N -0.262 5.262 19 C 0.349 3.651 20 O -0.444 6.444 21 C -0.135 4.135 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.080 4.080 26 Cl -0.035 7.035 27 C -0.082 4.082 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.282 0.718 38 H 0.283 0.717 39 H 0.171 0.829 40 H 0.195 0.805 41 H 0.183 0.817 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.606 -32.075 -4.963 32.497 hybrid contribution -0.451 0.218 -0.226 0.549 sum -2.057 -31.857 -5.189 32.342 Atomic orbital electron populations 1.70096 1.07815 1.27658 1.52059 1.26003 0.95766 1.03412 0.94985 0.85524 0.78259 0.78188 0.79217 1.19097 1.21086 1.19182 1.21721 0.93638 0.92439 1.49933 0.92032 1.19068 0.94643 0.93557 0.94466 1.21290 0.97537 0.91832 1.01554 1.21522 0.96766 0.93297 1.02090 1.21610 0.95310 0.87863 0.96907 0.85238 1.59069 1.17284 1.54852 1.02775 1.23057 0.78975 0.89200 0.81090 1.90682 1.58772 1.57860 1.37177 1.45373 1.54566 1.14488 1.12127 1.44794 1.55053 1.15075 1.11288 1.18633 0.78836 0.86167 0.81511 1.90825 1.58704 1.57449 1.37446 1.19397 1.04061 0.94664 0.95339 1.21740 0.95907 0.94276 0.97605 1.21526 0.96272 0.95734 0.98382 1.21718 0.97130 0.99950 0.90521 1.20922 1.02412 0.96286 0.88343 1.98399 1.87907 1.89451 1.27714 1.21090 0.94842 0.94677 0.97621 0.92943 0.99212 0.99537 0.91982 0.92538 0.91189 0.92754 0.83557 0.83234 0.71817 0.71737 0.82886 0.80467 0.81709 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.08 -3.30 5.04 30.59 0.15 -3.15 16 11 C -0.10 -3.02 4.84 30.59 0.15 -2.87 16 12 C 0.10 2.33 3.15 44.17 0.14 2.47 16 13 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 14 N -0.81 -18.44 8.44 -171.80 -1.45 -19.89 16 15 C 0.49 11.35 7.18 87.66 0.63 11.98 16 16 O -0.57 -15.24 16.09 -3.04 -0.05 -15.29 16 17 N -0.52 -10.99 6.26 -173.53 -1.09 -12.08 16 18 N -0.51 -9.89 6.21 -175.60 -1.09 -10.98 16 19 C 0.56 11.93 7.89 86.79 0.68 12.61 16 20 O -0.57 -16.07 16.19 -3.89 -0.06 -16.13 16 21 C -0.13 -2.08 5.87 -20.09 -0.12 -2.19 16 22 C -0.08 -0.71 9.54 22.53 0.21 -0.50 16 23 C -0.10 -0.57 10.03 22.23 0.22 -0.35 16 24 C -0.07 -0.58 9.82 22.35 0.22 -0.36 16 25 C -0.05 -0.70 6.31 22.29 0.14 -0.56 16 26 Cl -0.06 -0.87 28.95 -2.72 -0.08 -0.95 16 27 C -0.06 -1.05 9.38 22.55 0.21 -0.84 16 28 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.06 2.46 7.75 -2.39 -0.02 2.44 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.35 8.39 8.58 -89.69 -0.77 7.62 16 36 H 0.35 6.53 9.06 -89.69 -0.81 5.71 16 37 H 0.44 8.98 8.00 -213.32 -1.71 7.28 16 38 H 0.44 6.78 6.03 -213.32 -1.29 5.49 16 39 H 0.15 0.78 6.40 -2.91 -0.02 0.76 16 40 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 41 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 42 H 0.13 2.59 7.65 -2.92 -0.02 2.57 16 Total: -1.00 -75.34 379.38 -1.49 -76.83 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -3.47 Total: 22.27 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.49 Total: -13.04 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -3.34 Total: -100.51 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.11 Total: -31.42 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -75.34 -1.49 -76.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.797 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds