Wall clock time and date at job start Tue Mar 31 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99895 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99574 * 12 11 10 15 15 C 1.50700 * 109.46738 * 175.00110 * 12 11 10 16 16 O 1.21283 * 120.00142 * 100.00354 * 15 12 11 17 17 N 1.34775 * 120.00303 * 279.99439 * 15 12 11 18 18 N 1.40098 * 120.00499 * 180.02562 * 17 15 12 19 19 C 1.34778 * 119.99908 * 179.97438 * 18 17 15 20 20 O 1.21553 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.47849 * 119.99668 * 179.97438 * 19 18 17 22 22 C 1.39595 * 120.13807 * 359.72944 * 21 19 18 23 23 C 1.37948 * 119.87616 * 179.73995 * 22 21 19 24 24 C 1.38356 * 120.16115 * 0.53823 * 23 22 21 25 25 C 1.38446 * 120.27758 * 359.73378 * 24 23 22 26 26 Cl 1.73608 * 119.93711 * 180.02562 * 25 24 23 27 27 C 1.38097 * 120.12106 * 359.97438 * 25 24 23 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 30 30 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 31 31 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 35 35 H 1.00902 * 111.00138 * 300.00948 * 14 12 11 36 36 H 1.00908 * 110.99704 * 63.95534 * 14 12 11 37 37 H 0.97005 * 119.99246 * 0.02562 * 17 15 12 38 38 H 0.96992 * 119.99977 * 0.02562 * 18 17 15 39 39 H 1.08000 * 120.06368 * 0.02562 * 22 21 19 40 40 H 1.08006 * 119.91599 * 180.27239 * 23 22 21 41 41 H 1.07995 * 119.86068 * 179.76790 * 24 23 22 42 42 H 1.07996 * 120.08283 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1587 -6.0426 0.8435 14 7 3.2378 -6.1425 -1.2534 15 6 1.7253 -7.4515 0.1263 16 8 1.5131 -8.1257 -0.8593 17 7 1.2910 -7.8664 1.3328 18 7 0.5947 -9.0766 1.4486 19 6 0.1609 -9.4916 2.6553 20 8 0.3734 -8.8158 3.6430 21 6 -0.5743 -10.7685 2.7773 22 6 -0.8257 -11.5437 1.6439 23 6 -1.5075 -12.7368 1.7648 24 6 -1.9520 -13.1609 3.0045 25 6 -1.7113 -12.3945 4.1320 26 17 -2.2725 -12.9355 5.6833 27 6 -1.0246 -11.2012 4.0252 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8534 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8914 35 1 2.6255 -6.2406 -2.0494 36 1 3.7995 -5.3077 -1.3301 37 1 1.4605 -7.3270 2.1210 38 1 0.4256 -9.6161 0.6605 39 1 -0.4830 -11.2122 0.6749 40 1 -1.6985 -13.3392 0.8889 41 1 -2.4886 -14.0940 3.0929 42 1 -0.8368 -10.6040 4.9053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:34 Heat of formation + Delta-G solvation = -34.912948 kcal Electronic energy + Delta-G solvation = -25290.148235 eV Core-core repulsion = 21296.600580 eV Total energy + Delta-G solvation = -3993.547655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00897 -39.94969 -38.79070 -36.95667 -36.33693 -35.54727 -33.43512 -32.66464 -31.59261 -31.31776 -30.65549 -27.88963 -25.67958 -24.45677 -23.26004 -22.67155 -21.72175 -20.67878 -20.24431 -18.72032 -18.18511 -17.39137 -16.48997 -16.37879 -16.14041 -15.81432 -15.58326 -15.07235 -14.91370 -14.80908 -14.50164 -14.44706 -14.39438 -13.99905 -13.88883 -13.40684 -12.60443 -12.57244 -12.19912 -12.12356 -12.07269 -11.92670 -11.54910 -11.50987 -11.30473 -10.87758 -10.82387 -10.68738 -10.59088 -10.11766 -9.83717 -9.73607 -9.47163 -9.41508 -9.17366 -8.70418 -8.59535 -8.40855 -6.05554 -4.08647 0.10375 0.54825 1.36015 1.63178 2.10905 2.48564 3.15297 3.27550 3.35387 3.38909 3.54450 4.02321 4.14675 4.34544 4.40679 4.42376 4.62132 4.68092 4.68834 4.85682 5.06914 5.15940 5.18759 5.30490 5.47106 5.55729 5.60544 5.65736 5.84031 5.99348 6.16307 6.30453 6.37967 6.49834 6.66121 6.96025 7.02143 7.23516 7.46991 7.52321 7.59478 7.71268 7.93251 8.07270 8.34729 8.98695 9.56166 11.05665 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.001749 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.877118 B =16008.700014 C =17078.765231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.150 4.150 12 C 0.088 3.912 13 H 0.107 0.893 14 N -0.828 5.828 15 C 0.527 3.473 16 O -0.533 6.533 17 N -0.523 5.523 18 N -0.515 5.515 19 C 0.559 3.441 20 O -0.528 6.528 21 C -0.112 4.112 22 C -0.081 4.081 23 C -0.110 4.110 24 C -0.083 4.083 25 C -0.043 4.043 26 Cl -0.059 7.059 27 C -0.047 4.047 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.351 0.649 36 H 0.357 0.643 37 H 0.435 0.565 38 H 0.430 0.570 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -29.329 5.352 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.189 4.189 12 C -0.028 4.028 13 H 0.125 0.875 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.407 6.407 17 N -0.274 5.274 18 N -0.263 5.263 19 C 0.346 3.654 20 O -0.404 6.404 21 C -0.117 4.117 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.070 4.070 26 Cl -0.030 7.030 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.173 0.827 37 H 0.278 0.722 38 H 0.274 0.726 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.677 -29.900 5.737 30.563 hybrid contribution -0.316 1.775 -0.071 1.804 sum -2.994 -28.125 5.666 28.846 Atomic orbital electron populations 1.69973 1.06086 1.26582 1.50741 1.25043 0.94859 0.99367 0.95264 0.86534 0.80100 0.83744 0.77611 1.19703 1.21007 1.20996 1.21271 0.93059 0.91016 1.50706 0.92576 1.19089 0.93938 0.91282 0.97304 1.21660 0.99181 0.93257 1.00555 1.22478 0.98293 0.95003 1.03176 1.21327 0.95576 0.89508 0.96421 0.87509 1.58659 1.28092 1.46441 1.02960 1.21185 0.78563 0.87754 0.81090 1.90677 1.56879 1.56539 1.36585 1.45095 1.55877 1.14309 1.12091 1.44633 1.55273 1.15346 1.11011 1.18179 0.79459 0.85732 0.82019 1.90847 1.57177 1.56064 1.36319 1.19511 1.02775 0.95099 0.94323 1.21497 0.96444 0.94243 0.97852 1.21117 0.97934 0.96273 0.97523 1.21347 0.98121 0.99610 0.91064 1.20821 1.02028 0.96347 0.87800 1.98402 1.87930 1.89553 1.27084 1.21139 0.93685 0.93953 0.97899 0.93002 0.96671 0.96530 0.92813 0.93182 0.91437 0.91289 0.83547 0.82735 0.72237 0.72618 0.84680 0.83925 0.84150 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -1.99 4.92 -26.74 -0.13 -2.12 16 11 C -0.15 -2.24 4.84 -26.73 -0.13 -2.36 16 12 C 0.09 1.11 3.21 -68.86 -0.22 0.89 16 13 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 14 N -0.83 -10.44 8.94 -5.66 -0.05 -10.49 16 15 C 0.53 6.90 7.19 -10.99 -0.08 6.82 16 16 O -0.53 -8.18 16.09 5.55 0.09 -8.09 16 17 N -0.52 -6.04 6.26 31.22 0.20 -5.85 16 18 N -0.51 -5.34 6.21 30.53 0.19 -5.15 16 19 C 0.56 6.06 7.89 -12.33 -0.10 5.96 16 20 O -0.53 -7.34 16.19 5.32 0.09 -7.25 16 21 C -0.11 -0.94 5.87 -104.97 -0.62 -1.56 16 22 C -0.08 -0.48 9.54 -39.18 -0.37 -0.86 16 23 C -0.11 -0.51 10.03 -39.64 -0.40 -0.91 16 24 C -0.08 -0.44 9.82 -39.46 -0.39 -0.82 16 25 C -0.04 -0.31 6.31 -39.56 -0.25 -0.56 16 26 Cl -0.06 -0.42 28.95 -51.86 -1.50 -1.92 16 27 C -0.05 -0.39 9.38 -39.15 -0.37 -0.76 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.87 6.87 -51.93 -0.36 0.51 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.35 4.54 8.58 -39.29 -0.34 4.20 16 36 H 0.36 4.22 7.55 -39.29 -0.30 3.92 16 37 H 0.43 4.71 8.00 -182.59 -1.46 3.25 16 38 H 0.43 3.79 6.03 -182.61 -1.10 2.69 16 39 H 0.14 0.56 6.40 -52.49 -0.34 0.22 16 40 H 0.14 0.30 8.06 -52.48 -0.42 -0.13 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.15 1.33 7.65 -52.49 -0.40 0.93 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -33.74 377.43 -10.40 -44.14 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.21 Total: 7.56 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.60 Total: -9.09 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 1.07 Total: -47.37 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.18 Total: -15.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.74 -10.40 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.230 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds