Wall clock time and date at job start Tue Mar 31 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99895 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99574 * 12 11 10 15 15 C 1.50700 * 109.46738 * 175.00110 * 12 11 10 16 16 O 1.21283 * 120.00142 * 100.00354 * 15 12 11 17 17 N 1.34775 * 120.00303 * 279.99439 * 15 12 11 18 18 N 1.40098 * 120.00499 * 180.02562 * 17 15 12 19 19 C 1.34778 * 119.99908 * 179.97438 * 18 17 15 20 20 O 1.21553 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.47849 * 119.99668 * 179.97438 * 19 18 17 22 22 C 1.39595 * 120.13807 * 359.72944 * 21 19 18 23 23 C 1.37948 * 119.87616 * 179.73995 * 22 21 19 24 24 C 1.38356 * 120.16115 * 0.53823 * 23 22 21 25 25 C 1.38446 * 120.27758 * 359.73378 * 24 23 22 26 26 Cl 1.73608 * 119.93711 * 180.02562 * 25 24 23 27 27 C 1.38097 * 120.12106 * 359.97438 * 25 24 23 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 30 30 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 31 31 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 35 35 H 1.00902 * 111.00138 * 300.00948 * 14 12 11 36 36 H 1.00908 * 110.99704 * 63.95534 * 14 12 11 37 37 H 0.97005 * 119.99246 * 0.02562 * 17 15 12 38 38 H 0.96992 * 119.99977 * 0.02562 * 18 17 15 39 39 H 1.08000 * 120.06368 * 0.02562 * 22 21 19 40 40 H 1.08006 * 119.91599 * 180.27239 * 23 22 21 41 41 H 1.07995 * 119.86068 * 179.76790 * 24 23 22 42 42 H 1.07996 * 120.08283 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 1 3.1587 -6.0426 0.8435 14 7 3.2378 -6.1425 -1.2534 15 6 1.7253 -7.4515 0.1263 16 8 1.5131 -8.1257 -0.8593 17 7 1.2910 -7.8664 1.3328 18 7 0.5947 -9.0766 1.4486 19 6 0.1609 -9.4916 2.6553 20 8 0.3734 -8.8158 3.6430 21 6 -0.5743 -10.7685 2.7773 22 6 -0.8257 -11.5437 1.6439 23 6 -1.5075 -12.7368 1.7648 24 6 -1.9520 -13.1609 3.0045 25 6 -1.7113 -12.3945 4.1320 26 17 -2.2725 -12.9355 5.6833 27 6 -1.0246 -11.2012 4.0252 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8534 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8914 35 1 2.6255 -6.2406 -2.0494 36 1 3.7995 -5.3077 -1.3301 37 1 1.4605 -7.3270 2.1210 38 1 0.4256 -9.6161 0.6605 39 1 -0.4830 -11.2122 0.6749 40 1 -1.6985 -13.3392 0.8889 41 1 -2.4886 -14.0940 3.0929 42 1 -0.8368 -10.6040 4.9053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:33 Heat of formation + Delta-G solvation = -58.905948 kcal Electronic energy + Delta-G solvation = -25291.188649 eV Core-core repulsion = 21296.600580 eV Total energy + Delta-G solvation = -3994.588069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85981 -40.81342 -39.52557 -37.57255 -37.48793 -36.58416 -35.29432 -33.45534 -32.99752 -32.11800 -31.35057 -29.38342 -27.07206 -25.34550 -24.26351 -23.67111 -22.61020 -21.95126 -21.42979 -19.55280 -19.07822 -18.47322 -18.24819 -17.16633 -16.78556 -16.74675 -16.51705 -16.26663 -16.11287 -16.00009 -15.79616 -15.35457 -15.09493 -14.82820 -14.73430 -14.46148 -14.28427 -13.71179 -13.69821 -13.03942 -12.96717 -12.67611 -12.61957 -12.58844 -12.50235 -12.42093 -12.37388 -12.06699 -11.60839 -11.49937 -11.44529 -11.28728 -10.96695 -10.56815 -10.26912 -9.93058 -9.74645 -9.56430 -8.20785 -6.31702 -0.45820 0.05371 0.53918 1.05215 1.22082 1.39861 1.40648 1.53411 1.62097 2.40393 2.57898 2.70661 3.13028 3.23991 3.61620 3.68475 3.72283 3.88230 3.92672 3.97092 4.04710 4.20023 4.36392 4.38735 4.52404 4.74423 4.75026 4.95743 5.00161 5.09080 5.16602 5.17923 5.24063 5.37406 5.48293 5.52809 5.61162 5.73515 5.85644 6.03112 6.23625 6.30584 6.48141 6.63507 6.87020 7.11951 7.38195 8.91064 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017486 B = 0.001749 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.877118 B =16008.700014 C =17078.765231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.098 3.902 13 H 0.129 0.871 14 N -0.828 5.828 15 C 0.530 3.470 16 O -0.556 6.556 17 N -0.520 5.520 18 N -0.510 5.510 19 C 0.560 3.440 20 O -0.566 6.566 21 C -0.129 4.129 22 C -0.076 4.076 23 C -0.101 4.101 24 C -0.075 4.075 25 C -0.053 4.053 26 Cl -0.064 7.064 27 C -0.062 4.062 28 H 0.262 0.738 29 H -0.013 1.013 30 H -0.011 1.011 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.349 0.651 36 H 0.362 0.638 37 H 0.438 0.562 38 H 0.438 0.562 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -30.792 4.597 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.178 4.178 12 C -0.019 4.019 13 H 0.146 0.854 14 N -0.361 5.361 15 C 0.317 3.683 16 O -0.431 6.431 17 N -0.270 5.270 18 N -0.259 5.259 19 C 0.349 3.651 20 O -0.445 6.445 21 C -0.134 4.134 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.080 4.080 26 Cl -0.035 7.035 27 C -0.082 4.082 28 H 0.071 0.929 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.282 0.718 38 H 0.283 0.717 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.183 0.817 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.752 -31.380 4.980 31.821 hybrid contribution -0.660 2.152 0.164 2.257 sum -2.411 -29.228 5.144 29.775 Atomic orbital electron populations 1.70110 1.07876 1.27619 1.52001 1.26012 0.95742 1.03504 0.94934 0.85411 0.79276 0.78856 0.77581 1.18225 1.20620 1.20680 1.21773 0.93744 0.92271 1.49950 0.91689 1.19027 0.94573 0.93391 0.94628 1.21438 0.97936 0.92292 1.01622 1.22293 0.98377 0.94467 1.02699 1.21242 0.95120 0.88207 0.97330 0.85365 1.58680 1.27927 1.46680 1.02829 1.21147 0.78380 0.87738 0.81058 1.90666 1.57834 1.57296 1.37339 1.45042 1.55326 1.14764 1.11836 1.44712 1.54914 1.14865 1.11365 1.18622 0.78860 0.86175 0.81419 1.90821 1.58763 1.57386 1.37485 1.19382 1.04040 0.94643 0.95328 1.21756 0.95841 0.94272 0.97653 1.21525 0.96309 0.95693 0.98379 1.21714 0.97128 0.99944 0.90531 1.20916 1.02417 0.96326 0.88313 1.98398 1.87962 1.89475 1.27665 1.21082 0.94826 0.94700 0.97602 0.92909 0.99449 0.99217 0.91725 0.92029 0.92544 0.91313 0.83738 0.82158 0.71843 0.71671 0.82844 0.80463 0.81713 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 3 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.06 4.97 29.84 0.15 1.20 16 10 C -0.10 -3.41 4.92 30.59 0.15 -3.26 16 11 C -0.14 -4.06 4.84 30.59 0.15 -3.91 16 12 C 0.10 2.31 3.21 44.17 0.14 2.45 16 13 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 14 N -0.83 -19.52 8.94 -171.81 -1.54 -21.05 16 15 C 0.53 13.28 7.19 87.66 0.63 13.91 16 16 O -0.56 -16.40 16.09 -3.04 -0.05 -16.45 16 17 N -0.52 -11.66 6.26 -173.53 -1.09 -12.75 16 18 N -0.51 -10.27 6.21 -175.60 -1.09 -11.36 16 19 C 0.56 12.24 7.89 86.79 0.68 12.92 16 20 O -0.57 -16.30 16.19 -3.88 -0.06 -16.36 16 21 C -0.13 -2.12 5.87 -20.09 -0.12 -2.24 16 22 C -0.08 -0.75 9.54 22.53 0.21 -0.53 16 23 C -0.10 -0.61 10.03 22.23 0.22 -0.39 16 24 C -0.07 -0.60 9.82 22.35 0.22 -0.38 16 25 C -0.05 -0.71 6.31 22.29 0.14 -0.57 16 26 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 27 C -0.06 -1.06 9.38 22.55 0.21 -0.85 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.06 6.87 -2.39 -0.02 2.04 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.35 8.61 8.58 -89.69 -0.77 7.84 16 36 H 0.36 7.85 7.55 -89.69 -0.68 7.17 16 37 H 0.44 9.32 8.00 -213.32 -1.71 7.61 16 38 H 0.44 7.20 6.03 -213.33 -1.29 5.91 16 39 H 0.15 0.87 6.40 -2.91 -0.02 0.85 16 40 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.13 2.63 7.65 -2.91 -0.02 2.60 16 Total: -1.00 -74.10 377.43 -1.43 -75.53 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -3.33 Total: 25.11 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 3.49 Total: -10.95 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -3.43 Total: -101.66 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.11 Total: -32.81 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -74.10 -1.43 -75.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.626 kcal (2) G-P(sol) polarization free energy of solvation -74.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds