Wall clock time and date at job start Tue Mar 31 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46806 * 299.99995 * 3 2 1 6 6 H 1.48500 * 109.47025 * 59.99727 * 3 2 1 7 7 C 1.37880 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46583 * 54.99757 * 12 11 10 14 14 N 1.46901 * 109.47276 * 295.00158 * 12 11 10 15 15 C 1.50702 * 109.47191 * 174.99768 * 12 11 10 16 16 O 1.21278 * 119.99607 * 100.00591 * 15 12 11 17 17 N 1.34772 * 119.99792 * 280.00080 * 15 12 11 18 18 C 1.39299 * 119.99389 * 175.49218 * 17 15 12 19 19 C 1.38815 * 120.15659 * 34.74730 * 18 17 15 20 20 C 1.38062 * 120.10233 * 179.69384 * 19 18 17 21 21 C 1.38499 * 120.42828 * 0.60055 * 20 19 18 22 22 C 1.37973 * 120.31442 * 359.67791 * 21 20 19 23 23 Cl 1.73598 * 120.05774 * 179.97438 * 22 21 20 24 24 C 1.39822 * 119.88558 * 0.02562 * 22 21 20 25 25 C 1.47449 * 120.20794 * 179.97438 * 24 22 21 26 26 N 1.34779 * 120.00033 * 90.02484 * 25 24 22 27 27 O 1.21593 * 120.00132 * 270.01881 * 25 24 22 28 28 H 0.96994 * 120.00640 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47711 * 60.00544 * 9 7 2 30 30 H 1.09004 * 109.47701 * 299.99667 * 9 7 2 31 31 H 1.08997 * 109.47388 * 60.00193 * 10 9 7 32 32 H 1.09000 * 109.47120 * 299.99973 * 10 9 7 33 33 H 1.09005 * 109.47490 * 59.99653 * 11 10 9 34 34 H 1.09000 * 109.46897 * 299.99939 * 11 10 9 35 35 H 1.00892 * 111.00217 * 176.03979 * 14 12 11 36 36 H 1.00893 * 110.99734 * 299.99711 * 14 12 11 37 37 H 0.96992 * 120.00369 * 355.49625 * 17 15 12 38 38 H 1.08000 * 119.94662 * 359.97185 * 19 18 17 39 39 H 1.08002 * 119.78984 * 180.27227 * 20 19 18 40 40 H 1.07998 * 119.84420 * 179.69525 * 21 20 19 41 41 H 0.97009 * 119.99815 * 359.97438 * 26 25 24 42 42 H 0.96990 * 120.00134 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 1 3.1589 -6.0427 0.8455 14 7 3.2378 -6.1423 -1.2516 15 6 1.7253 -7.4515 0.1281 16 8 1.5131 -8.1256 -0.8575 17 7 1.2911 -7.8664 1.3346 18 6 0.5180 -9.0206 1.4374 19 6 0.7499 -10.0932 0.5873 20 6 -0.0128 -11.2391 0.6944 21 6 -1.0216 -11.3245 1.6395 22 6 -1.2709 -10.2666 2.4895 23 17 -2.5374 -10.3806 3.6713 24 6 -0.5024 -9.1023 2.3967 25 6 -0.7630 -7.9673 3.3012 26 7 -0.1229 -7.8878 4.4845 27 8 -1.5554 -7.1030 2.9793 28 1 -0.4851 0.8399 -0.0004 29 1 0.6241 -2.5576 -0.8880 30 1 0.6248 -2.5563 0.8920 31 1 2.8721 -3.6035 0.8926 32 1 2.8721 -3.6051 -0.8873 33 1 0.8540 -5.0454 -0.8869 34 1 0.8536 -5.0443 0.8931 35 1 3.9455 -6.8614 -1.2489 36 1 2.6255 -6.2404 -2.0475 37 1 1.5169 -7.3613 2.1313 38 1 1.5311 -10.0330 -0.1559 39 1 0.1748 -12.0722 0.0333 40 1 -1.6157 -12.2234 1.7117 41 1 0.5091 -8.5775 4.7414 42 1 -0.2940 -7.1410 5.0793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:36 Heat of formation + Delta-G solvation = -69.572964 kcal Electronic energy + Delta-G solvation = -26563.412366 eV Core-core repulsion = 22568.361741 eV Total energy + Delta-G solvation = -3995.050626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32733 -39.84854 -38.52228 -36.99549 -35.89678 -35.21005 -33.97823 -33.38121 -31.41468 -31.35205 -30.30618 -27.95820 -25.53770 -24.52147 -23.51293 -22.15331 -21.14257 -20.42235 -20.04752 -18.67658 -17.95245 -17.57872 -17.14517 -16.42205 -16.12871 -15.97499 -15.72190 -15.41644 -14.78968 -14.56270 -14.44309 -14.22245 -14.12183 -14.04528 -13.78145 -13.10028 -12.67061 -12.43833 -12.43068 -12.05635 -11.77481 -11.56506 -11.46567 -11.19022 -10.85268 -10.75060 -10.62362 -10.43560 -10.38679 -10.31605 -10.04405 -9.62765 -9.29662 -9.24124 -9.04344 -8.75220 -8.64733 -8.28261 -5.92962 -3.95100 0.48584 0.67420 1.57465 2.17844 2.20809 2.66105 3.04611 3.15841 3.35089 3.42358 3.46649 4.26494 4.36822 4.46175 4.51575 4.56584 4.64340 4.84321 4.94860 5.00614 5.04172 5.26545 5.42565 5.56213 5.62738 5.81235 5.87607 5.93767 6.06182 6.35285 6.40473 6.42052 6.78448 6.80550 6.89795 6.98600 7.05695 7.22803 7.38682 7.70241 7.76867 7.86992 7.91720 8.08293 8.50712 9.12859 9.68601 11.18417 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.002570 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.122807 B =10892.383901 C =12289.998752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.106 4.106 12 C 0.082 3.918 13 H 0.105 0.895 14 N -0.808 5.808 15 C 0.487 3.513 16 O -0.522 6.522 17 N -0.671 5.671 18 C 0.197 3.803 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.129 4.129 22 C 0.012 3.988 23 Cl -0.053 7.053 24 C -0.154 4.154 25 C 0.565 3.435 26 N -0.847 5.847 27 O -0.507 6.507 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.339 0.661 36 H 0.353 0.647 37 H 0.414 0.586 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.402 0.598 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 -28.108 8.462 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.034 4.034 13 H 0.123 0.877 14 N -0.336 5.336 15 C 0.275 3.725 16 O -0.397 6.397 17 N -0.316 5.316 18 C 0.099 3.901 19 C -0.141 4.141 20 C -0.090 4.090 21 C -0.149 4.149 22 C -0.016 4.016 23 Cl -0.024 7.024 24 C -0.161 4.161 25 C 0.348 3.652 26 N -0.412 5.412 27 O -0.380 6.380 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.251 0.749 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.231 0.769 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.942 -27.151 7.625 28.268 hybrid contribution 0.066 0.097 0.842 0.850 sum 2.009 -27.053 8.468 28.419 Atomic orbital electron populations 1.69979 1.06046 1.26375 1.51120 1.25043 0.94818 0.99229 0.95519 0.86567 0.80137 0.83972 0.77506 1.19736 1.21071 1.21120 1.21295 0.93053 0.91053 1.50088 0.92616 1.19126 0.94081 0.91567 0.97074 1.21534 0.98751 0.92125 1.01165 1.21709 0.96447 0.93856 1.02432 1.21837 0.95849 0.89953 0.95754 0.87707 1.59017 1.17235 1.54258 1.03119 1.23035 0.78607 0.89076 0.81806 1.90670 1.55682 1.56547 1.36767 1.43685 1.51536 1.25088 1.11265 1.17547 0.90121 0.87131 0.95261 1.21393 1.01798 0.90974 0.99913 1.21181 0.93638 0.97700 0.96522 1.20994 0.99771 0.98276 0.95856 1.20604 0.92342 0.94260 0.94429 1.98405 1.49868 1.98054 1.56048 1.19513 0.98541 0.95272 1.02758 1.17948 0.80714 0.85002 0.81581 1.43857 1.46903 1.30079 1.20327 1.90958 1.33513 1.39256 1.74275 0.93133 0.96734 0.96883 0.93636 0.91747 0.91659 0.91691 0.84837 0.83272 0.74948 0.83074 0.84129 0.84139 0.76939 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -1.99 5.04 -26.73 -0.13 -2.12 16 11 C -0.11 -1.77 4.84 -26.73 -0.13 -1.90 16 12 C 0.08 1.04 3.15 -68.86 -0.22 0.82 16 13 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 14 N -0.81 -10.01 8.44 -5.65 -0.05 -10.06 16 15 C 0.49 6.10 6.91 -10.99 -0.08 6.02 16 16 O -0.52 -7.56 13.66 5.56 0.08 -7.49 16 17 N -0.67 -7.17 5.02 -9.69 -0.05 -7.22 16 18 C 0.20 2.15 6.31 -83.48 -0.53 1.62 16 19 C -0.12 -1.20 8.68 -39.43 -0.34 -1.54 16 20 C -0.07 -0.55 10.03 -39.55 -0.40 -0.95 16 21 C -0.13 -1.02 9.81 -39.58 -0.39 -1.41 16 22 C 0.01 0.11 6.35 -39.09 -0.25 -0.13 16 23 Cl -0.05 -0.51 28.04 -51.86 -1.45 -1.97 16 24 C -0.15 -1.69 5.64 -104.78 -0.59 -2.28 16 25 C 0.57 6.66 5.65 -12.51 -0.07 6.59 16 26 N -0.85 -5.96 8.87 30.44 0.27 -5.69 16 27 O -0.51 -8.58 17.94 5.28 0.09 -8.49 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.34 3.43 9.06 -39.30 -0.36 3.07 16 36 H 0.35 4.59 8.58 -39.30 -0.34 4.25 16 37 H 0.41 3.66 8.18 -40.82 -0.33 3.32 16 38 H 0.15 1.58 6.19 -52.49 -0.32 1.26 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.40 1.62 8.81 -40.82 -0.36 1.26 16 42 H 0.41 2.54 8.93 -40.82 -0.36 2.17 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -36.55 376.59 -8.79 -45.34 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.40 Total: 8.42 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.67 Total: -8.62 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.91 Total: -49.89 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.17 Total: -15.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.55 -8.79 -45.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.232 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds