Wall clock time and date at job start Tue Mar 31 2020 22:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46806 * 299.99995 * 3 2 1 6 6 H 1.48500 * 109.47025 * 59.99727 * 3 2 1 7 7 C 1.37880 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46583 * 54.99757 * 12 11 10 14 14 N 1.46901 * 109.47276 * 295.00158 * 12 11 10 15 15 C 1.50702 * 109.47191 * 174.99768 * 12 11 10 16 16 O 1.21278 * 119.99607 * 100.00591 * 15 12 11 17 17 N 1.34772 * 119.99792 * 280.00080 * 15 12 11 18 18 C 1.39299 * 119.99389 * 175.49218 * 17 15 12 19 19 C 1.38815 * 120.15659 * 34.74730 * 18 17 15 20 20 C 1.38062 * 120.10233 * 179.69384 * 19 18 17 21 21 C 1.38499 * 120.42828 * 0.60055 * 20 19 18 22 22 C 1.37973 * 120.31442 * 359.67791 * 21 20 19 23 23 Cl 1.73598 * 120.05774 * 179.97438 * 22 21 20 24 24 C 1.39822 * 119.88558 * 0.02562 * 22 21 20 25 25 C 1.47449 * 120.20794 * 179.97438 * 24 22 21 26 26 N 1.34779 * 120.00033 * 90.02484 * 25 24 22 27 27 O 1.21593 * 120.00132 * 270.01881 * 25 24 22 28 28 H 0.96994 * 120.00640 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47711 * 60.00544 * 9 7 2 30 30 H 1.09004 * 109.47701 * 299.99667 * 9 7 2 31 31 H 1.08997 * 109.47388 * 60.00193 * 10 9 7 32 32 H 1.09000 * 109.47120 * 299.99973 * 10 9 7 33 33 H 1.09005 * 109.47490 * 59.99653 * 11 10 9 34 34 H 1.09000 * 109.46897 * 299.99939 * 11 10 9 35 35 H 1.00892 * 111.00217 * 176.03979 * 14 12 11 36 36 H 1.00893 * 110.99734 * 299.99711 * 14 12 11 37 37 H 0.96992 * 120.00369 * 355.49625 * 17 15 12 38 38 H 1.08000 * 119.94662 * 359.97185 * 19 18 17 39 39 H 1.08002 * 119.78984 * 180.27227 * 20 19 18 40 40 H 1.07998 * 119.84420 * 179.69525 * 21 20 19 41 41 H 0.97009 * 119.99815 * 359.97438 * 26 25 24 42 42 H 0.96990 * 120.00134 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 1 3.1589 -6.0427 0.8455 14 7 3.2378 -6.1423 -1.2516 15 6 1.7253 -7.4515 0.1281 16 8 1.5131 -8.1256 -0.8575 17 7 1.2911 -7.8664 1.3346 18 6 0.5180 -9.0206 1.4374 19 6 0.7499 -10.0932 0.5873 20 6 -0.0128 -11.2391 0.6944 21 6 -1.0216 -11.3245 1.6395 22 6 -1.2709 -10.2666 2.4895 23 17 -2.5374 -10.3806 3.6713 24 6 -0.5024 -9.1023 2.3967 25 6 -0.7630 -7.9673 3.3012 26 7 -0.1229 -7.8878 4.4845 27 8 -1.5554 -7.1030 2.9793 28 1 -0.4851 0.8399 -0.0004 29 1 0.6241 -2.5576 -0.8880 30 1 0.6248 -2.5563 0.8920 31 1 2.8721 -3.6035 0.8926 32 1 2.8721 -3.6051 -0.8873 33 1 0.8540 -5.0454 -0.8869 34 1 0.8536 -5.0443 0.8931 35 1 3.9455 -6.8614 -1.2489 36 1 2.6255 -6.2404 -2.0475 37 1 1.5169 -7.3613 2.1313 38 1 1.5311 -10.0330 -0.1559 39 1 0.1748 -12.0722 0.0333 40 1 -1.6157 -12.2234 1.7117 41 1 0.5091 -8.5775 4.7414 42 1 -0.2940 -7.1410 5.0793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:35 Heat of formation + Delta-G solvation = -98.808192 kcal Electronic energy + Delta-G solvation = -26564.680101 eV Core-core repulsion = 22568.361741 eV Total energy + Delta-G solvation = -3996.318360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20348 -40.79587 -39.37415 -37.78288 -37.20697 -36.08106 -35.28817 -34.82969 -33.17616 -32.10243 -31.10069 -29.55257 -26.99143 -25.34632 -24.85463 -23.39680 -21.94849 -21.79792 -21.38141 -19.49098 -18.72535 -18.54344 -18.45055 -17.96727 -17.21653 -16.95527 -16.56033 -16.47553 -16.37477 -15.75000 -15.51602 -15.41001 -15.01966 -14.95737 -14.68018 -14.50017 -14.31903 -13.69587 -13.38897 -13.18664 -13.13328 -12.90827 -12.79064 -12.55449 -12.33329 -12.24314 -12.21037 -11.68292 -11.50061 -11.42365 -11.30320 -11.24584 -10.99907 -10.85818 -10.54339 -10.04722 -9.80795 -9.43547 -8.17606 -6.29018 -0.25109 -0.06233 0.82955 1.23897 1.28272 1.40698 1.41445 1.55120 1.81208 2.32020 2.40869 2.42773 3.15354 3.32245 3.57876 3.69573 3.79324 3.88431 3.91365 4.06830 4.17848 4.20551 4.36048 4.45609 4.60104 4.84820 4.87745 4.93566 5.08103 5.12792 5.22732 5.24218 5.32286 5.58952 5.62561 5.71160 5.81091 5.90319 5.92483 6.10469 6.21151 6.28057 6.46195 6.77036 6.89565 7.11832 7.40472 8.94636 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.002570 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.122807 B =10892.383901 C =12289.998752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.020 3.980 10 C -0.081 4.081 11 C -0.097 4.097 12 C 0.093 3.907 13 H 0.132 0.868 14 N -0.813 5.813 15 C 0.491 3.509 16 O -0.543 6.543 17 N -0.663 5.663 18 C 0.178 3.822 19 C -0.129 4.129 20 C -0.060 4.060 21 C -0.120 4.120 22 C 0.001 3.999 23 Cl -0.056 7.056 24 C -0.167 4.167 25 C 0.566 3.434 26 N -0.822 5.822 27 O -0.569 6.569 28 H 0.262 0.738 29 H -0.018 1.018 30 H -0.014 1.014 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.355 0.645 36 H 0.348 0.652 37 H 0.421 0.579 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.419 0.581 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 -29.637 9.010 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.082 0.918 9 C -0.017 4.017 10 C -0.119 4.119 11 C -0.136 4.136 12 C -0.023 4.023 13 H 0.150 0.850 14 N -0.342 5.342 15 C 0.278 3.722 16 O -0.419 6.419 17 N -0.308 5.308 18 C 0.082 3.918 19 C -0.149 4.149 20 C -0.079 4.079 21 C -0.139 4.139 22 C -0.027 4.027 23 Cl -0.026 7.026 24 C -0.174 4.174 25 C 0.349 3.651 26 N -0.386 5.386 27 O -0.448 6.448 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.004 0.996 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.259 0.741 38 H 0.164 0.836 39 H 0.192 0.808 40 H 0.186 0.814 41 H 0.251 0.749 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.830 -28.730 8.239 30.132 hybrid contribution -0.540 0.475 0.710 1.011 sum 3.290 -28.255 8.949 29.820 Atomic orbital electron populations 1.70129 1.07995 1.27605 1.52098 1.26057 0.95742 1.03613 0.94898 0.85374 0.79237 0.78624 0.77664 1.18168 1.20591 1.20405 1.21751 0.93656 0.92225 1.49860 0.91795 1.19063 0.94605 0.93865 0.94160 1.21267 0.97402 0.91521 1.01663 1.21472 0.96778 0.93957 1.01361 1.21630 0.95257 0.88355 0.97014 0.85003 1.59003 1.17422 1.55099 1.02721 1.22848 0.78480 0.88876 0.82021 1.90660 1.56536 1.57190 1.37539 1.43539 1.51023 1.25227 1.11015 1.17690 0.90689 0.87469 0.95979 1.21498 1.02252 0.91580 0.99613 1.21554 0.92343 0.97708 0.96250 1.21350 0.99488 0.98450 0.94615 1.20808 0.92257 0.94629 0.95037 1.98403 1.49968 1.98038 1.56238 1.19492 0.99266 0.95474 1.03122 1.18159 0.80029 0.84459 0.82435 1.43686 1.45727 1.30392 1.18829 1.90929 1.36508 1.41523 1.75812 0.92925 0.99984 0.99599 0.92235 0.91855 0.93588 0.92126 0.83114 0.83775 0.74093 0.83608 0.80816 0.81396 0.74902 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.29 21.45 0.28 -59.05 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.08 -3.30 5.04 30.60 0.15 -3.14 16 11 C -0.10 -3.28 4.84 30.59 0.15 -3.13 16 12 C 0.09 2.26 3.15 44.17 0.14 2.40 16 13 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 14 N -0.81 -19.19 8.44 -171.80 -1.45 -20.64 16 15 C 0.49 11.95 6.91 87.66 0.61 12.55 16 16 O -0.54 -15.43 13.66 -3.02 -0.04 -15.48 16 17 N -0.66 -13.76 5.02 -302.95 -1.52 -15.27 16 18 C 0.18 3.76 6.31 38.59 0.24 4.01 16 19 C -0.13 -2.37 8.68 22.37 0.19 -2.18 16 20 C -0.06 -0.76 10.03 22.29 0.22 -0.53 16 21 C -0.12 -1.58 9.81 22.27 0.22 -1.36 16 22 C 0.00 0.01 6.35 22.59 0.14 0.15 16 23 Cl -0.06 -1.02 28.04 -2.72 -0.08 -1.10 16 24 C -0.17 -3.57 5.64 -19.97 -0.11 -3.68 16 25 C 0.57 13.39 5.65 86.67 0.49 13.88 16 26 N -0.82 -11.02 8.87 -175.88 -1.56 -12.58 16 27 O -0.57 -20.03 17.94 -4.01 -0.07 -20.10 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.60 7.75 -2.39 -0.02 2.58 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.35 6.55 9.06 -89.70 -0.81 5.73 16 36 H 0.35 8.91 8.58 -89.70 -0.77 8.14 16 37 H 0.42 7.11 8.18 -92.71 -0.76 6.35 16 38 H 0.15 2.87 6.19 -2.91 -0.02 2.85 16 39 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.42 2.79 8.81 -92.70 -0.82 1.97 16 42 H 0.42 4.91 8.93 -92.72 -0.83 4.08 16 Total: -1.00 -81.78 376.59 -1.98 -83.76 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -2.86 Total: 23.93 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 3.29 Total: -10.77 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.24 Total: -107.54 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.11 Total: -35.58 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -81.78 -1.98 -83.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.052 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds