Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47285 * 240.00212 * 3 2 1 5 5 H 1.48491 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46807 * 120.00081 * 3 2 1 7 7 C 1.38655 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99675 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00342 * 185.06038 * 9 7 2 11 11 C 1.38875 * 120.06648 * 354.46140 * 10 9 7 12 12 C 1.38103 * 119.92953 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06879 * 0.02768 * 12 11 10 14 14 C 1.50704 * 119.93346 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47087 * 89.99640 * 14 13 12 16 16 C 1.35864 * 119.42254 * 90.00073 * 15 14 13 17 17 C 1.35053 * 120.95203 * 179.97438 * 16 15 14 18 18 C 1.41262 * 119.79074 * 0.03079 * 17 16 15 19 19 C 1.48296 * 120.55186 * 179.97438 * 18 17 16 20 20 N 1.34104 * 126.68220 * 359.67830 * 19 18 17 21 21 N 1.28992 * 107.25907 * 179.83921 * 20 19 18 22 22 N 1.28729 * 108.96311 * 0.43814 * 21 20 19 23 23 H 0.96992 * 125.33070 * 179.74724 * 22 21 20 24 24 N 1.28871 * 109.33375 * 359.72109 * 22 21 20 25 25 C 1.38579 * 118.89793 * 0.03558 * 18 17 16 26 26 C 1.34582 * 119.42350 * 270.02669 * 15 14 13 27 27 O 1.22090 * 119.92333 * 359.97438 * 26 15 14 28 28 C 1.38300 * 120.13844 * 0.24746 * 13 12 11 29 29 C 1.38104 * 120.06935 * 359.45437 * 28 13 12 30 30 H 0.97006 * 120.00154 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03706 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.96481 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.46543 * 330.00113 * 14 13 12 34 34 H 1.08996 * 109.46941 * 209.99597 * 14 13 12 35 35 H 1.08003 * 119.52886 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.10718 * 179.74887 * 17 16 15 37 37 H 1.07994 * 120.47359 * 179.97438 * 25 18 17 38 38 H 1.08003 * 119.96687 * 179.70789 * 28 13 12 39 39 H 1.07999 * 120.03720 * 180.27042 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8205 0.3203 14 6 4.3848 -7.0820 0.4370 15 7 4.6565 -7.3589 1.8497 16 6 3.7856 -8.1226 2.5597 17 6 4.0059 -8.3977 3.8634 18 6 5.1564 -7.8863 4.5039 19 6 5.4147 -8.1773 5.9349 20 7 4.6446 -8.9062 6.7559 21 7 5.2210 -8.9197 7.9097 22 7 6.3043 -8.2275 7.8443 23 1 6.9197 -8.0780 8.5790 24 7 6.4435 -7.7647 6.6496 25 6 6.0391 -7.1070 3.7731 26 6 5.7643 -6.8519 2.4217 27 8 6.5317 -6.1684 1.7626 28 6 2.1873 -5.8893 0.3283 29 6 1.4365 -4.7346 0.2272 30 1 -0.4851 0.8401 0.0004 31 1 3.9525 -2.4845 -0.0024 32 1 5.2811 -4.5472 0.1898 33 1 5.3271 -6.9556 -0.0962 34 1 3.8308 -7.9146 0.0036 35 1 2.9042 -8.5155 2.0745 36 1 3.3024 -9.0029 4.4158 37 1 6.9264 -6.7027 4.2373 38 1 1.6953 -6.8465 0.4179 39 1 0.3579 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581858463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = 129.589170 kcal Electronic energy + Delta-G solvation = -27297.586144 eV Core-core repulsion = 23210.064342 eV Total energy + Delta-G solvation = -4087.521801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.81286 -41.36555 -39.05204 -37.01601 -36.89204 -35.35135 -34.49888 -32.95518 -32.30759 -30.35643 -30.15532 -29.83941 -26.76848 -25.51687 -25.04970 -24.36537 -23.44909 -21.96460 -21.95010 -20.64510 -19.60789 -18.06587 -17.57880 -17.49736 -17.26351 -16.99639 -16.66317 -15.92548 -15.17991 -14.69842 -14.58466 -14.38401 -14.26292 -14.14502 -13.68581 -13.54659 -13.18048 -12.84072 -12.69509 -12.62072 -12.34055 -12.24788 -11.96052 -11.76160 -11.62128 -11.58513 -11.43830 -11.35419 -10.90353 -10.81731 -10.69743 -10.48573 -10.01549 -9.69056 -9.39167 -8.89074 -8.25241 -8.02321 -7.31829 -6.51367 -4.09860 0.18237 0.79997 1.51721 1.86929 1.98976 2.17121 2.20207 2.85261 3.11381 3.13291 3.15102 3.27079 3.61159 3.80921 3.92833 4.44424 4.56972 4.63375 4.83279 4.99278 5.02509 5.05512 5.12498 5.17792 5.22661 5.29952 5.56533 5.69879 5.72330 5.78161 5.91559 5.98234 6.07432 6.14750 6.35302 6.38616 6.60454 6.83255 6.97235 7.04388 7.15393 7.32666 7.38035 7.73477 7.77047 7.93797 8.03029 8.94137 9.61707 10.66046 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002463 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.726350 B =11366.618784 C =12122.200915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.162 3.838 11 C -0.238 4.238 12 C -0.039 4.039 13 C -0.223 4.223 14 C 0.147 3.853 15 N -0.482 5.482 16 C 0.153 3.847 17 C -0.218 4.218 18 C 0.084 3.916 19 C 0.212 3.788 20 N -0.256 5.256 21 N -0.049 5.049 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.280 5.280 25 C -0.198 4.198 26 C 0.517 3.483 27 O -0.541 6.541 28 C -0.057 4.057 29 C -0.197 4.197 30 H 0.272 0.728 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.111 0.889 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 -18.781 10.474 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.107 3.893 11 C -0.257 4.257 12 C -0.058 4.058 13 C -0.225 4.225 14 C 0.028 3.972 15 N -0.192 5.192 16 C 0.025 3.975 17 C -0.242 4.242 18 C 0.077 3.923 19 C -0.068 4.068 20 N -0.130 5.130 21 N -0.044 5.044 22 N -0.072 5.072 23 H 0.331 0.669 24 N -0.132 5.132 25 C -0.223 4.223 26 C 0.318 3.682 27 O -0.423 6.423 28 C -0.076 4.076 29 C -0.216 4.216 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.129 0.871 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.904 -18.362 10.551 23.379 hybrid contribution 0.874 1.183 0.318 1.505 sum 10.779 -17.179 10.869 23.009 Atomic orbital electron populations 1.70025 1.06004 1.27976 1.45418 1.25311 0.95859 0.98920 0.96303 0.85769 0.78736 0.79570 0.79346 1.19370 1.20193 1.19394 1.21328 0.91898 0.80721 1.52964 0.88947 1.83967 1.34529 1.11573 1.77412 1.19454 0.90332 0.88068 0.91441 1.21187 0.93722 0.99057 1.11765 1.20786 0.99071 0.91459 0.94487 1.19219 0.93387 0.93742 1.16172 1.20759 1.01371 0.96620 0.78495 1.45978 1.19846 1.40210 1.13160 1.21847 0.93439 0.89982 0.92278 1.20433 1.00207 1.09439 0.94079 1.17715 0.94600 0.94739 0.85201 1.23631 0.89016 0.97370 0.96788 1.76133 1.23421 1.17686 0.95747 1.78940 0.96119 1.11546 1.17785 1.47769 1.18137 1.31500 1.09765 0.66855 1.75018 1.24323 1.21116 0.92785 1.22529 1.02642 1.03532 0.93633 1.16700 0.81247 0.81912 0.88370 1.90978 1.47341 1.39521 1.64417 1.20450 0.92532 0.96780 0.97792 1.20163 0.99571 0.90239 1.11638 0.91834 0.85454 0.86607 0.88065 0.88925 0.81477 0.82791 0.82688 0.87087 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.17 -4.87 9.76 0.06 0.00 -4.86 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -5.24 9.17 -39.40 -0.36 -5.60 16 12 C -0.04 -0.75 9.67 -39.61 -0.38 -1.13 16 13 C -0.22 -3.58 5.46 -104.57 -0.57 -4.15 16 14 C 0.15 1.78 5.44 -5.19 -0.03 1.75 16 15 N -0.48 -5.87 2.57 -121.22 -0.31 -6.18 16 16 C 0.15 1.40 10.25 -16.90 -0.17 1.22 16 17 C -0.22 -2.05 9.69 -39.57 -0.38 -2.44 16 18 C 0.08 0.95 5.91 -104.49 -0.62 0.33 16 19 C 0.21 2.34 7.95 -156.26 -1.24 1.10 16 20 N -0.26 -2.84 12.31 32.14 0.40 -2.45 16 21 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 22 N -0.23 -1.54 7.90 60.35 0.48 -1.06 16 23 H 0.48 0.88 8.96 -340.36 -3.05 -2.17 16 24 N -0.28 -2.73 12.13 32.15 0.39 -2.34 16 25 C -0.20 -2.52 9.70 -38.70 -0.38 -2.89 16 26 C 0.52 7.60 7.39 -15.59 -0.12 7.48 16 27 O -0.54 -9.75 16.01 4.84 0.08 -9.67 16 28 C -0.06 -0.91 9.69 -39.61 -0.38 -1.29 16 29 C -0.20 -3.95 9.99 -39.39 -0.39 -4.34 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 32 H 0.12 2.15 7.47 -52.49 -0.39 1.76 16 33 H 0.10 1.30 7.31 -51.93 -0.38 0.92 16 34 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 35 H 0.17 0.92 8.02 -52.48 -0.42 0.50 16 36 H 0.15 1.19 7.96 -52.49 -0.42 0.78 16 37 H 0.16 1.90 7.92 -52.49 -0.42 1.48 16 38 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -35.47 351.50 -8.26 -43.73 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.04 Total: 1.91 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -5.09 Total: -16.00 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 2.52 Total: -35.91 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.47 -8.26 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581858463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.320 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds