Wall clock time and date at job start Tue Mar 31 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47285 * 240.00212 * 3 2 1 5 5 H 1.48491 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46807 * 120.00081 * 3 2 1 7 7 C 1.38655 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99675 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00342 * 185.06038 * 9 7 2 11 11 C 1.38875 * 120.06648 * 354.46140 * 10 9 7 12 12 C 1.38103 * 119.92953 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06879 * 0.02768 * 12 11 10 14 14 C 1.50704 * 119.93346 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47087 * 89.99640 * 14 13 12 16 16 C 1.35864 * 119.42254 * 90.00073 * 15 14 13 17 17 C 1.35053 * 120.95203 * 179.97438 * 16 15 14 18 18 C 1.41262 * 119.79074 * 0.03079 * 17 16 15 19 19 C 1.48296 * 120.55186 * 179.97438 * 18 17 16 20 20 N 1.34104 * 126.68220 * 359.67830 * 19 18 17 21 21 N 1.28992 * 107.25907 * 179.83921 * 20 19 18 22 22 N 1.28729 * 108.96311 * 0.43814 * 21 20 19 23 23 H 0.96992 * 125.33070 * 179.74724 * 22 21 20 24 24 N 1.28871 * 109.33375 * 359.72109 * 22 21 20 25 25 C 1.38579 * 118.89793 * 0.03558 * 18 17 16 26 26 C 1.34582 * 119.42350 * 270.02669 * 15 14 13 27 27 O 1.22090 * 119.92333 * 359.97438 * 26 15 14 28 28 C 1.38300 * 120.13844 * 0.24746 * 13 12 11 29 29 C 1.38104 * 120.06935 * 359.45437 * 28 13 12 30 30 H 0.97006 * 120.00154 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03706 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.96481 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.46543 * 330.00113 * 14 13 12 34 34 H 1.08996 * 109.46941 * 209.99597 * 14 13 12 35 35 H 1.08003 * 119.52886 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.10718 * 179.74887 * 17 16 15 37 37 H 1.07994 * 120.47359 * 179.97438 * 25 18 17 38 38 H 1.08003 * 119.96687 * 179.70789 * 28 13 12 39 39 H 1.07999 * 120.03720 * 180.27042 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8205 0.3203 14 6 4.3848 -7.0820 0.4370 15 7 4.6565 -7.3589 1.8497 16 6 3.7856 -8.1226 2.5597 17 6 4.0059 -8.3977 3.8634 18 6 5.1564 -7.8863 4.5039 19 6 5.4147 -8.1773 5.9349 20 7 4.6446 -8.9062 6.7559 21 7 5.2210 -8.9197 7.9097 22 7 6.3043 -8.2275 7.8443 23 1 6.9197 -8.0780 8.5790 24 7 6.4435 -7.7647 6.6496 25 6 6.0391 -7.1070 3.7731 26 6 5.7643 -6.8519 2.4217 27 8 6.5317 -6.1684 1.7626 28 6 2.1873 -5.8893 0.3283 29 6 1.4365 -4.7346 0.2272 30 1 -0.4851 0.8401 0.0004 31 1 3.9525 -2.4845 -0.0024 32 1 5.2811 -4.5472 0.1898 33 1 5.3271 -6.9556 -0.0962 34 1 3.8308 -7.9146 0.0036 35 1 2.9042 -8.5155 2.0745 36 1 3.3024 -9.0029 4.4158 37 1 6.9264 -6.7027 4.2373 38 1 1.6953 -6.8465 0.4179 39 1 0.3579 -4.7884 0.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581858463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:54 Heat of formation + Delta-G solvation = 104.628881 kcal Electronic energy + Delta-G solvation = -27298.668503 eV Core-core repulsion = 23210.064342 eV Total energy + Delta-G solvation = -4088.604161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.55663 -42.35510 -40.73163 -38.47881 -38.04113 -36.36699 -35.27804 -34.39469 -33.69998 -31.83868 -31.47143 -30.84224 -28.06469 -27.16392 -25.96172 -25.39377 -24.36241 -23.51612 -22.92341 -22.07982 -20.32570 -19.87523 -18.97509 -18.35563 -18.23247 -18.16177 -17.54873 -17.13822 -16.40528 -16.28166 -16.10444 -15.70955 -15.55329 -15.12569 -15.08740 -14.99558 -14.49122 -14.23445 -13.95665 -13.66592 -13.42507 -13.28203 -13.13843 -13.03745 -12.91510 -12.76190 -12.51314 -12.43619 -12.32417 -12.21930 -12.17167 -11.92895 -11.24412 -11.12833 -10.81988 -10.58429 -9.80091 -9.03953 -8.93801 -8.51305 -6.19278 -0.68728 0.06838 0.52333 0.58884 0.72520 1.28790 1.31949 1.32913 1.41291 1.47477 1.82073 2.14677 2.49575 2.67336 2.81109 3.02891 3.14708 3.48951 3.74096 3.85084 3.96068 4.02329 4.09910 4.15604 4.20551 4.27138 4.34755 4.48210 4.55481 4.68564 4.80477 4.85390 5.04440 5.08142 5.11513 5.25616 5.26671 5.52701 5.53290 5.57672 5.69419 5.72886 5.99407 6.13778 6.18524 6.93607 7.00251 7.02090 7.72266 8.71099 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002463 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.726350 B =11366.618784 C =12122.200915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.014 2.986 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.095 0.905 9 O -0.226 6.226 10 C 0.121 3.879 11 C -0.254 4.254 12 C -0.050 4.050 13 C -0.192 4.192 14 C 0.148 3.852 15 N -0.482 5.482 16 C 0.162 3.838 17 C -0.216 4.216 18 C 0.097 3.903 19 C 0.196 3.804 20 N -0.271 5.271 21 N -0.051 5.051 22 N -0.198 5.198 23 H 0.496 0.504 24 N -0.288 5.288 25 C -0.229 4.229 26 C 0.504 3.496 27 O -0.592 6.592 28 C -0.035 4.035 29 C -0.204 4.204 30 H 0.274 0.726 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.222 0.778 36 H 0.178 0.822 37 H 0.147 0.853 38 H 0.177 0.823 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.037 -22.495 11.364 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.112 0.888 9 O -0.132 6.132 10 C 0.070 3.930 11 C -0.273 4.273 12 C -0.069 4.069 13 C -0.194 4.194 14 C 0.028 3.972 15 N -0.190 5.190 16 C 0.035 3.965 17 C -0.239 4.239 18 C 0.090 3.910 19 C -0.084 4.084 20 N -0.143 5.143 21 N -0.046 5.046 22 N -0.049 5.049 23 H 0.355 0.645 24 N -0.141 5.141 25 C -0.254 4.254 26 C 0.308 3.692 27 O -0.478 6.478 28 C -0.053 4.053 29 C -0.223 4.223 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.238 0.762 36 H 0.195 0.805 37 H 0.164 0.836 38 H 0.195 0.805 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.969 -22.158 11.481 26.873 hybrid contribution 1.014 1.862 0.223 2.132 sum 10.983 -20.297 11.704 25.876 Atomic orbital electron populations 1.70150 1.07806 1.28972 1.48383 1.26508 0.96854 1.02505 0.95719 0.84719 0.77526 0.74645 0.79799 1.18250 1.19085 1.18611 1.21710 0.92303 0.81635 1.53613 0.88757 1.83930 1.35795 1.12552 1.80971 1.20064 0.91149 0.88462 0.93294 1.21192 0.93583 0.99614 1.12912 1.20952 0.99074 0.92007 0.94884 1.19762 0.94176 0.94267 1.11158 1.20922 1.01189 0.96283 0.78786 1.45869 1.19654 1.40191 1.13270 1.22690 0.93660 0.88080 0.92076 1.20812 0.99601 1.09016 0.94519 1.17923 0.94544 0.93236 0.85296 1.23677 0.89567 0.98170 0.96996 1.76105 1.23959 1.18160 0.96112 1.78884 0.96626 1.11821 1.17270 1.47829 1.17659 1.29769 1.09599 0.64477 1.75001 1.24270 1.21218 0.93612 1.22310 1.03719 1.06005 0.93366 1.16961 0.81718 0.81734 0.88796 1.90947 1.49233 1.42154 1.65448 1.21063 0.92052 0.97860 0.94341 1.20570 1.00442 0.90159 1.11154 0.91660 0.87444 0.86672 0.88923 0.82944 0.76171 0.80458 0.83563 0.80534 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.67 21.61 0.30 -55.89 16 2 C -0.02 -1.01 5.49 84.83 0.47 -0.55 16 3 Si 1.01 43.85 29.55 68.60 2.03 45.88 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.42 -24.78 9.49 67.92 0.64 -24.14 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.63 9.76 -22.70 -0.22 -13.85 16 10 C 0.12 5.99 6.65 22.58 0.15 6.14 16 11 C -0.25 -11.67 9.17 22.39 0.21 -11.46 16 12 C -0.05 -1.90 9.67 22.25 0.22 -1.69 16 13 C -0.19 -5.45 5.46 -19.83 -0.11 -5.56 16 14 C 0.15 2.83 5.44 85.63 0.47 3.30 16 15 N -0.48 -9.74 2.57 -655.60 -1.68 -11.43 16 16 C 0.16 1.98 10.25 83.34 0.85 2.83 16 17 C -0.22 -3.12 9.69 22.28 0.22 -2.90 16 18 C 0.10 1.98 5.91 -19.78 -0.12 1.86 16 19 C 0.20 3.96 7.95 137.29 1.09 5.05 16 20 N -0.27 -5.37 12.31 -52.24 -0.64 -6.01 16 21 N -0.05 -0.83 13.47 37.02 0.50 -0.34 16 22 N -0.20 -2.30 7.90 37.02 0.29 -2.01 16 23 H 0.50 0.78 8.96 -347.53 -3.12 -2.33 16 24 N -0.29 -5.20 12.13 -52.19 -0.63 -5.83 16 25 C -0.23 -5.70 9.70 22.84 0.22 -5.48 16 26 C 0.50 14.26 7.39 84.76 0.63 14.89 16 27 O -0.59 -21.61 16.01 -5.61 -0.09 -21.70 16 28 C -0.04 -0.95 9.69 22.25 0.22 -0.73 16 29 C -0.20 -7.91 9.99 22.39 0.22 -7.69 16 30 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 32 H 0.12 4.36 7.47 -2.91 -0.02 4.34 16 33 H 0.09 2.08 7.31 -2.39 -0.02 2.06 16 34 H 0.15 1.26 7.94 -2.39 -0.02 1.24 16 35 H 0.22 0.35 8.02 -2.91 -0.02 0.33 16 36 H 0.18 1.81 7.96 -2.91 -0.02 1.78 16 37 H 0.15 3.74 7.92 -2.91 -0.02 3.72 16 38 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -87.33 351.50 3.24 -84.09 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -1.97 Total: 13.21 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.37 Total: -26.12 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.87 Total: -81.50 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.31 Total: -35.55 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -87.33 3.24 -84.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581858463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.719 kcal (2) G-P(sol) polarization free energy of solvation -87.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds