Wall clock time and date at job start Tue Mar 31 2020 22:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86794 * 120.00345 * 2 1 4 4 H 1.48498 * 109.47103 * 274.98148 * 3 2 1 5 5 H 1.48504 * 109.46968 * 34.98375 * 3 2 1 6 6 H 1.48506 * 109.47196 * 154.97925 * 3 2 1 7 7 C 1.38987 * 119.99388 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99404 * 185.93437 * 7 2 1 9 9 N 1.37319 * 120.00524 * 5.93135 * 7 2 1 10 10 C 1.36493 * 126.06920 * 174.12719 * 9 7 2 11 11 C 1.35695 * 107.50358 * 180.02562 * 10 9 7 12 12 N 1.40533 * 126.08088 * 180.02562 * 11 10 9 13 13 C 1.34786 * 119.99640 * 179.97438 * 12 11 10 14 14 O 1.21597 * 119.99969 * 359.72066 * 13 12 11 15 15 C 1.47627 * 119.99613 * 179.97438 * 13 12 11 16 16 C 1.39726 * 120.07983 * 359.72340 * 15 13 12 17 17 C 1.37711 * 119.91239 * 179.69728 * 16 15 13 18 18 C 1.39050 * 120.08417 * 0.60182 * 17 16 15 19 19 N 1.39838 * 119.92122 * 179.70043 * 18 17 16 20 20 C 1.37749 * 126.52099 * 130.00490 * 19 18 17 21 21 C 1.34406 * 106.90086 * 180.02562 * 20 19 18 22 22 N 1.34397 * 108.34619 * 359.97438 * 21 20 19 23 23 C 1.31002 * 109.37183 * 359.72833 * 22 21 20 24 24 O 1.35487 * 125.78879 * 180.27045 * 23 22 21 25 25 C 1.39056 * 120.15949 * 359.67109 * 18 17 16 26 26 C 1.37712 * 120.08110 * 0.02634 * 25 18 17 27 27 C 1.40661 * 107.83370 * 0.25830 * 11 10 9 28 28 N 1.30909 * 108.38677 * 359.55780 * 27 11 10 29 29 H 0.96999 * 119.99292 * 359.97438 * 1 2 3 30 30 H 1.07996 * 126.24843 * 0.02562 * 10 9 7 31 31 H 0.96996 * 120.00643 * 359.97438 * 12 11 10 32 32 H 1.07997 * 120.04075 * 359.97438 * 16 15 13 33 33 H 1.08004 * 119.95943 * 180.32045 * 17 16 15 34 34 H 1.07997 * 126.55242 * 0.02562 * 20 19 18 35 35 H 1.07999 * 125.82660 * 180.02562 * 21 20 19 36 36 H 0.96708 * 113.99582 * 270.19686 * 24 23 22 37 37 H 1.07999 * 119.95896 * 179.97438 * 25 18 17 38 38 H 1.07999 * 120.04083 * 180.02562 * 26 25 18 39 39 H 1.08000 * 125.81172 * 179.71878 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.3893 2.1071 -1.3948 5 1 1.5012 2.6199 0.8028 6 1 3.5933 1.4119 0.5922 7 6 2.0078 -1.2037 -0.0005 8 1 3.0835 -1.2063 0.0962 9 7 1.3267 -2.3897 -0.1240 10 6 1.8861 -3.6281 -0.2520 11 6 0.8730 -4.5259 -0.3463 12 7 1.0105 -5.9170 -0.4902 13 6 -0.0852 -6.6976 -0.5719 14 8 -1.1927 -6.1987 -0.5162 15 6 0.0593 -8.1590 -0.7236 16 6 1.3311 -8.7339 -0.7884 17 6 1.4620 -10.0981 -0.9236 18 6 0.3305 -10.9019 -1.0083 19 7 0.4673 -12.2861 -1.1518 20 6 -0.1616 -13.2544 -0.4005 21 6 0.2518 -14.4437 -0.8708 22 7 1.1095 -14.2238 -1.8819 23 6 1.2433 -12.9337 -2.0654 24 8 2.0242 -12.3434 -3.0021 25 6 -0.9368 -10.3325 -0.9499 26 6 -1.0755 -8.9697 -0.8085 27 6 -0.3394 -3.8157 -0.2799 28 7 -0.0655 -2.5431 -0.1413 29 1 -0.4849 0.8401 0.0004 30 1 2.9423 -3.8526 -0.2742 31 1 1.8939 -6.3155 -0.5306 32 1 2.2104 -8.1097 -0.7279 33 1 2.4447 -10.5439 -0.9685 34 1 -0.8545 -13.0894 0.4112 35 1 -0.0537 -15.4109 -0.4999 36 1 2.9269 -12.1638 -2.7052 37 1 -1.8135 -10.9598 -1.0164 38 1 -2.0601 -8.5283 -0.7628 39 1 -1.3281 -4.2471 -0.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583623542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:23 Heat of formation + Delta-G solvation = 119.627719 kcal Electronic energy + Delta-G solvation = -26888.809123 eV Core-core repulsion = 22800.855361 eV Total energy + Delta-G solvation = -4087.953762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68987 -40.36372 -39.46067 -38.15436 -37.70071 -34.49935 -34.38424 -33.25998 -31.52939 -30.51218 -30.04483 -29.07941 -27.74575 -25.21610 -24.22075 -23.38192 -21.93891 -21.66575 -21.14598 -20.60805 -19.55260 -19.31692 -17.97251 -17.72486 -17.13570 -16.24005 -15.76800 -15.56221 -15.33211 -15.01888 -14.97001 -14.77055 -14.52833 -14.11285 -14.03960 -13.92487 -13.59793 -13.36495 -13.04803 -12.88238 -12.66752 -12.28236 -11.74581 -11.68004 -11.50588 -11.32919 -11.00458 -10.75238 -10.57094 -10.43006 -10.27099 -9.52453 -9.43240 -9.24817 -9.11363 -8.88508 -8.78689 -8.13345 -6.78982 -6.62691 -4.29511 0.22866 0.87759 1.45673 1.96952 2.54355 2.65466 2.93709 3.00967 3.06747 3.39734 3.40638 3.42509 3.74762 3.81201 4.27881 4.32288 4.37343 4.38025 4.56341 4.78554 4.82498 4.94913 4.95085 5.01672 5.12402 5.17434 5.46697 5.48573 5.69861 5.84190 5.96730 6.10263 6.16370 6.17873 6.36787 6.45814 6.80708 6.87838 7.00747 7.15692 7.21107 7.47977 7.78803 8.04351 8.18453 8.52629 8.71635 9.30191 9.58937 10.33447 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.037105 B = 0.001861 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.427812 B =15042.272027 C =15589.453410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.082 4.082 11 C -0.064 4.064 12 N -0.612 5.612 13 C 0.535 3.465 14 O -0.529 6.529 15 C -0.106 4.106 16 C -0.073 4.073 17 C -0.117 4.117 18 C 0.128 3.872 19 N -0.419 5.419 20 C -0.037 4.037 21 C -0.012 4.012 22 N -0.480 5.480 23 C 0.384 3.616 24 O -0.437 6.437 25 C -0.118 4.118 26 C -0.045 4.045 27 C -0.029 4.029 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.396 0.604 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.401 0.599 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -21.833 -0.043 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.233 4.233 11 C -0.170 4.170 12 N -0.254 5.254 13 C 0.322 3.678 14 O -0.407 6.407 15 C -0.109 4.109 16 C -0.093 4.093 17 C -0.137 4.137 18 C 0.036 3.964 19 N -0.112 5.112 20 C -0.166 4.166 21 C -0.159 4.159 22 N -0.208 5.208 23 C 0.085 3.915 24 O -0.237 6.237 25 C -0.137 4.137 26 C -0.065 4.065 27 C -0.204 4.204 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.230 0.770 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.202 0.798 35 H 0.198 0.802 36 H 0.258 0.742 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.657 -20.613 -0.755 20.797 hybrid contribution 1.405 0.289 0.558 1.539 sum 4.062 -20.324 -0.197 20.727 Atomic orbital electron populations 1.70223 1.06185 1.28109 1.34852 1.25664 0.95712 1.00350 0.95407 0.85798 0.79447 0.79936 0.78906 1.19593 1.20051 1.18750 1.19903 0.92184 0.80663 1.52788 0.86517 1.44574 1.04039 1.03747 1.38390 1.21254 0.96808 0.85784 1.19497 1.17241 0.94457 0.81361 1.23902 1.42399 1.08029 1.05447 1.69524 1.17885 0.84805 0.85470 0.79646 1.90695 1.25258 1.74277 1.50461 1.20264 0.93892 0.94149 1.02625 1.21228 0.97077 0.94103 0.96858 1.20799 0.97263 0.93542 1.02057 1.17842 0.94798 0.80653 1.03103 1.43591 1.36590 1.04777 1.26201 1.22805 1.05024 0.87613 1.01208 1.22243 0.99480 0.98165 0.95971 1.70587 1.20267 1.11321 1.18629 1.20588 0.96134 0.85187 0.89576 1.84936 1.26525 1.79196 1.33062 1.21040 0.95668 0.95372 1.01638 1.21222 0.99608 0.91682 0.93950 1.24134 0.97999 0.90910 1.07400 1.78274 0.90258 1.15088 1.25575 0.91374 0.83618 0.76991 0.84357 0.85227 0.79844 0.80195 0.74233 0.84529 0.83260 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.09 11.84 55.50 0.66 -20.44 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.53 29.56 -169.99 -5.02 13.50 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.32 -8.35 10.24 -14.82 -0.15 -8.50 16 8 H 0.12 2.68 7.84 -52.48 -0.41 2.27 16 9 N -0.14 -3.76 3.74 -11.41 -0.04 -3.81 16 10 C -0.08 -1.87 11.49 -16.39 -0.19 -2.05 16 11 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 12 N -0.61 -10.28 5.41 -10.91 -0.06 -10.34 16 13 C 0.54 8.95 7.74 -12.42 -0.10 8.85 16 14 O -0.53 -10.85 13.48 5.28 0.07 -10.78 16 15 C -0.11 -1.29 5.88 -104.95 -0.62 -1.90 16 16 C -0.07 -0.67 9.53 -39.22 -0.37 -1.04 16 17 C -0.12 -0.96 9.38 -39.47 -0.37 -1.33 16 18 C 0.13 1.18 5.98 -83.60 -0.50 0.68 16 19 N -0.42 -3.87 2.89 -62.15 -0.18 -4.05 16 20 C -0.04 -0.28 11.30 -16.24 -0.18 -0.47 16 21 C -0.01 -0.10 11.84 -17.78 -0.21 -0.31 16 22 N -0.48 -5.39 11.27 -14.64 -0.17 -5.56 16 23 C 0.38 3.98 8.85 -88.85 -0.79 3.19 16 24 O -0.44 -3.84 13.24 -18.15 -0.24 -4.08 16 25 C -0.12 -1.08 9.67 -39.47 -0.38 -1.47 16 26 C -0.05 -0.50 9.58 -39.22 -0.38 -0.87 16 27 C -0.03 -0.74 10.85 -17.03 -0.18 -0.93 16 28 N -0.26 -7.45 10.42 30.80 0.32 -7.13 16 29 H 0.28 6.91 8.31 -40.82 -0.34 6.58 16 30 H 0.15 2.71 8.06 -52.49 -0.42 2.28 16 31 H 0.40 4.93 6.85 -40.82 -0.28 4.65 16 32 H 0.14 0.95 6.39 -52.49 -0.34 0.61 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.40 1.41 9.06 45.56 0.41 1.82 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 39 H 0.18 4.46 5.92 -52.49 -0.31 4.15 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -36.41 350.19 -7.05 -43.47 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -2.57 Total: 11.01 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -5.09 Total: -7.08 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.53 Total: -51.32 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.17 Total: -14.86 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.41 -7.05 -43.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.095 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds