Wall clock time and date at job start Tue Mar 31 2020 22:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86794 * 120.00345 * 2 1 4 4 H 1.48498 * 109.47103 * 274.98148 * 3 2 1 5 5 H 1.48504 * 109.46968 * 34.98375 * 3 2 1 6 6 H 1.48506 * 109.47196 * 154.97925 * 3 2 1 7 7 C 1.38987 * 119.99388 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99404 * 185.93437 * 7 2 1 9 9 N 1.37319 * 120.00524 * 5.93135 * 7 2 1 10 10 C 1.36493 * 126.06920 * 174.12719 * 9 7 2 11 11 C 1.35695 * 107.50358 * 180.02562 * 10 9 7 12 12 N 1.40533 * 126.08088 * 180.02562 * 11 10 9 13 13 C 1.34786 * 119.99640 * 179.97438 * 12 11 10 14 14 O 1.21597 * 119.99969 * 359.72066 * 13 12 11 15 15 C 1.47627 * 119.99613 * 179.97438 * 13 12 11 16 16 C 1.39726 * 120.07983 * 359.72340 * 15 13 12 17 17 C 1.37711 * 119.91239 * 179.69728 * 16 15 13 18 18 C 1.39050 * 120.08417 * 0.60182 * 17 16 15 19 19 N 1.39838 * 119.92122 * 179.70043 * 18 17 16 20 20 C 1.37749 * 126.52099 * 130.00490 * 19 18 17 21 21 C 1.34406 * 106.90086 * 180.02562 * 20 19 18 22 22 N 1.34397 * 108.34619 * 359.97438 * 21 20 19 23 23 C 1.31002 * 109.37183 * 359.72833 * 22 21 20 24 24 O 1.35487 * 125.78879 * 180.27045 * 23 22 21 25 25 C 1.39056 * 120.15949 * 359.67109 * 18 17 16 26 26 C 1.37712 * 120.08110 * 0.02634 * 25 18 17 27 27 C 1.40661 * 107.83370 * 0.25830 * 11 10 9 28 28 N 1.30909 * 108.38677 * 359.55780 * 27 11 10 29 29 H 0.96999 * 119.99292 * 359.97438 * 1 2 3 30 30 H 1.07996 * 126.24843 * 0.02562 * 10 9 7 31 31 H 0.96996 * 120.00643 * 359.97438 * 12 11 10 32 32 H 1.07997 * 120.04075 * 359.97438 * 16 15 13 33 33 H 1.08004 * 119.95943 * 180.32045 * 17 16 15 34 34 H 1.07997 * 126.55242 * 0.02562 * 20 19 18 35 35 H 1.07999 * 125.82660 * 180.02562 * 21 20 19 36 36 H 0.96708 * 113.99582 * 270.19686 * 24 23 22 37 37 H 1.07999 * 119.95896 * 179.97438 * 25 18 17 38 38 H 1.07999 * 120.04083 * 180.02562 * 26 25 18 39 39 H 1.08000 * 125.81172 * 179.71878 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 2.3893 2.1071 -1.3948 5 1 1.5012 2.6199 0.8028 6 1 3.5933 1.4119 0.5922 7 6 2.0078 -1.2037 -0.0005 8 1 3.0835 -1.2063 0.0962 9 7 1.3267 -2.3897 -0.1240 10 6 1.8861 -3.6281 -0.2520 11 6 0.8730 -4.5259 -0.3463 12 7 1.0105 -5.9170 -0.4902 13 6 -0.0852 -6.6976 -0.5719 14 8 -1.1927 -6.1987 -0.5162 15 6 0.0593 -8.1590 -0.7236 16 6 1.3311 -8.7339 -0.7884 17 6 1.4620 -10.0981 -0.9236 18 6 0.3305 -10.9019 -1.0083 19 7 0.4673 -12.2861 -1.1518 20 6 -0.1616 -13.2544 -0.4005 21 6 0.2518 -14.4437 -0.8708 22 7 1.1095 -14.2238 -1.8819 23 6 1.2433 -12.9337 -2.0654 24 8 2.0242 -12.3434 -3.0021 25 6 -0.9368 -10.3325 -0.9499 26 6 -1.0755 -8.9697 -0.8085 27 6 -0.3394 -3.8157 -0.2799 28 7 -0.0655 -2.5431 -0.1413 29 1 -0.4849 0.8401 0.0004 30 1 2.9423 -3.8526 -0.2742 31 1 1.8939 -6.3155 -0.5306 32 1 2.2104 -8.1097 -0.7279 33 1 2.4447 -10.5439 -0.9685 34 1 -0.8545 -13.0894 0.4112 35 1 -0.0537 -15.4109 -0.4999 36 1 2.9269 -12.1638 -2.7052 37 1 -1.8135 -10.9598 -1.0164 38 1 -2.0601 -8.5283 -0.7628 39 1 -1.3281 -4.2471 -0.3316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583623542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:22 Heat of formation + Delta-G solvation = 91.810252 kcal Electronic energy + Delta-G solvation = -26890.015379 eV Core-core repulsion = 22800.855361 eV Total energy + Delta-G solvation = -4089.160018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34441 -41.83402 -40.83699 -39.35682 -38.31397 -36.03228 -35.33253 -34.91223 -32.37094 -32.21956 -31.12866 -29.77091 -29.35489 -26.91346 -25.30303 -24.13625 -23.05046 -22.59962 -22.31376 -21.86718 -21.20425 -20.05320 -19.45074 -18.82814 -18.19108 -17.42871 -17.14565 -16.77007 -16.35123 -16.20102 -16.01951 -15.75713 -15.53705 -15.28882 -15.12963 -14.91701 -14.72894 -14.61214 -14.49847 -13.82575 -13.60842 -13.46718 -13.32192 -12.97255 -12.89765 -12.80297 -12.39258 -12.06777 -11.89871 -11.48394 -11.12162 -11.04661 -10.91088 -10.79208 -10.24147 -10.11551 -9.89131 -9.42729 -8.54631 -8.48005 -6.24926 -0.60199 0.16109 0.78829 1.25608 1.31434 1.40294 1.57421 1.58483 1.85844 1.92291 2.00035 2.24134 2.37302 2.76008 2.83271 2.89314 3.08218 3.59558 3.65600 3.71800 3.81066 4.08605 4.12357 4.42478 4.43270 4.45017 4.57022 4.60634 4.77763 4.84601 4.92387 5.00685 5.02427 5.17353 5.24014 5.28984 5.39460 5.45975 5.57670 5.85622 5.95460 6.29638 6.66253 6.67017 6.72771 6.84132 7.29737 7.45886 7.66779 8.51587 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.037105 B = 0.001861 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.427812 B =15042.272027 C =15589.453410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.168 5.168 10 C -0.076 4.076 11 C -0.048 4.048 12 N -0.605 5.605 13 C 0.537 3.463 14 O -0.573 6.573 15 C -0.127 4.127 16 C -0.059 4.059 17 C -0.111 4.111 18 C 0.132 3.868 19 N -0.422 5.422 20 C -0.033 4.033 21 C -0.024 4.024 22 N -0.513 5.513 23 C 0.372 3.628 24 O -0.448 6.448 25 C -0.115 4.115 26 C -0.051 4.051 27 C -0.058 4.058 28 N -0.312 5.312 29 H 0.276 0.724 30 H 0.192 0.808 31 H 0.420 0.580 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.213 0.787 35 H 0.204 0.796 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -23.765 0.126 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.164 1.164 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.250 5.250 13 C 0.327 3.673 14 O -0.454 6.454 15 C -0.130 4.130 16 C -0.078 4.078 17 C -0.130 4.130 18 C 0.040 3.960 19 N -0.116 5.116 20 C -0.161 4.161 21 C -0.169 4.169 22 N -0.243 5.243 23 C 0.073 3.927 24 O -0.252 6.252 25 C -0.134 4.134 26 C -0.071 4.071 27 C -0.233 4.233 28 N -0.144 5.144 29 H 0.086 0.914 30 H 0.209 0.791 31 H 0.258 0.742 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.230 0.770 35 H 0.221 0.779 36 H 0.282 0.718 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.521 -22.616 -0.582 23.287 hybrid contribution 0.516 0.556 0.476 0.896 sum 6.038 -22.060 -0.106 22.871 Atomic orbital electron populations 1.70406 1.08474 1.29108 1.37250 1.26893 0.96449 1.04394 0.94141 0.84579 0.78588 0.74178 0.78881 1.19261 1.20263 1.16408 1.20636 0.93457 0.80971 1.53363 0.83995 1.44857 1.03571 1.05291 1.39940 1.22026 0.98869 0.84465 1.17257 1.17299 0.92900 0.83845 1.21340 1.42287 1.09633 1.03205 1.69879 1.18644 0.83869 0.87315 0.77512 1.90676 1.27090 1.75619 1.52031 1.19913 0.95859 0.91050 1.06179 1.21431 0.96402 0.94837 0.95130 1.21101 0.98409 0.92894 1.00566 1.18037 0.95096 0.80948 1.01911 1.43657 1.36746 1.04778 1.26372 1.23345 1.04575 0.86979 1.01243 1.22734 0.99093 0.99652 0.95460 1.70566 1.21631 1.12071 1.19990 1.20716 0.96714 0.85284 0.89968 1.84887 1.27949 1.79008 1.33310 1.21115 0.96627 0.94534 1.01115 1.21191 0.99010 0.92504 0.94397 1.24187 0.99082 0.91129 1.08904 1.78163 0.92290 1.16619 1.27304 0.91408 0.79130 0.74174 0.81782 0.82197 0.77007 0.77893 0.71850 0.82865 0.84355 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.29 11.84 21.66 0.26 -47.04 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 3 Si 1.02 37.97 29.56 68.60 2.03 40.00 16 4 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 7 C -0.35 -18.32 10.24 84.01 0.86 -17.46 16 8 H 0.14 6.31 7.84 -2.91 -0.02 6.29 16 9 N -0.17 -9.13 3.74 -190.00 -0.71 -9.84 16 10 C -0.08 -3.36 11.49 83.38 0.96 -2.40 16 11 C -0.05 -2.11 6.90 37.75 0.26 -1.85 16 12 N -0.61 -19.52 5.41 -306.69 -1.66 -21.18 16 13 C 0.54 17.84 7.74 86.72 0.67 18.51 16 14 O -0.57 -24.46 13.48 -4.02 -0.05 -24.52 16 15 C -0.13 -2.90 5.88 -20.08 -0.12 -3.01 16 16 C -0.06 -0.88 9.53 22.50 0.21 -0.66 16 17 C -0.11 -1.38 9.38 22.34 0.21 -1.17 16 18 C 0.13 2.02 5.98 38.25 0.23 2.25 16 19 N -0.42 -6.57 2.89 -461.41 -1.33 -7.90 16 20 C -0.03 -0.40 11.30 82.89 0.94 0.53 16 21 C -0.02 -0.35 11.84 83.42 0.99 0.64 16 22 N -0.51 -10.61 11.27 -313.82 -3.54 -14.15 16 23 C 0.37 6.86 8.85 179.73 1.59 8.45 16 24 O -0.45 -6.80 13.24 -87.87 -1.16 -7.96 16 25 C -0.11 -1.86 9.67 22.34 0.22 -1.64 16 26 C -0.05 -1.08 9.58 22.50 0.22 -0.87 16 27 C -0.06 -3.10 10.85 85.42 0.93 -2.18 16 28 N -0.31 -18.64 10.42 -56.46 -0.59 -19.22 16 29 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.19 6.44 8.06 -2.91 -0.02 6.41 16 31 H 0.42 9.17 6.85 -92.71 -0.63 8.53 16 32 H 0.16 1.51 6.39 -2.91 -0.02 1.50 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.42 1.79 9.06 -74.05 -0.67 1.12 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 3.17 7.64 -2.91 -0.02 3.15 16 39 H 0.17 9.06 5.92 -2.91 -0.02 9.05 16 Total: -1.00 -84.67 350.19 1.71 -82.96 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -0.15 Total: 29.62 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 8.63 Total: -0.77 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -7.57 Total: -119.34 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.22 Total: -32.48 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -84.67 1.71 -82.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.771 kcal (2) G-P(sol) polarization free energy of solvation -84.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds