Wall clock time and date at job start Tue Mar 31 2020 22:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33642 * 125.67749 * 2 1 4 4 C 1.34560 * 110.87881 * 180.26550 * 3 2 1 5 5 C 1.47935 * 125.57804 * 180.02562 * 4 3 2 6 6 N 1.34200 * 126.70036 * 180.02562 * 5 4 3 7 7 N 1.28984 * 107.25315 * 179.97438 * 6 5 4 8 8 N 1.28719 * 108.98960 * 0.02562 * 7 6 5 9 9 H 0.97003 * 125.31966 * 179.97438 * 8 7 6 10 10 N 1.28872 * 109.36549 * 359.76293 * 8 7 6 11 11 C 1.35552 * 108.84410 * 359.97438 * 4 3 2 12 12 C 1.36605 * 125.67466 * 180.31271 * 2 1 3 13 13 C 1.47390 * 127.11236 * 359.73223 * 12 2 1 14 14 O 1.21613 * 119.99777 * 0.02562 * 13 12 2 15 15 N 1.34773 * 119.99801 * 180.02562 * 13 12 2 16 16 C 1.39137 * 119.99882 * 175.71438 * 15 13 12 17 17 C 1.39508 * 119.83601 * 215.02638 * 16 15 13 18 18 C 1.36359 * 120.16740 * 179.75455 * 17 16 15 19 19 C 1.40879 * 119.83022 * 0.54765 * 18 17 16 20 20 C 1.41135 * 120.16225 * 179.69244 * 19 18 17 21 21 H 1.08005 * 120.00409 * 214.80099 * 20 19 18 22 22 C 1.39904 * 120.00352 * 34.79997 * 20 19 18 23 23 N 1.30877 * 119.99510 * 355.56545 * 22 20 19 24 24 Si 1.86799 * 120.00049 * 175.56260 * 22 20 19 25 25 H 1.48490 * 109.47289 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.46946 * 120.00479 * 24 22 20 27 27 H 1.48502 * 109.46765 * 239.99890 * 24 22 20 28 28 C 1.40883 * 119.67646 * 359.70998 * 19 18 17 29 29 C 1.36361 * 119.82799 * 0.02562 * 28 19 18 30 30 H 1.08995 * 109.47258 * 269.69107 * 1 2 3 31 31 H 1.09007 * 109.46906 * 29.68788 * 1 2 3 32 32 H 1.08999 * 109.47464 * 149.68741 * 1 2 3 33 33 H 1.08005 * 127.06954 * 180.02562 * 11 4 3 34 34 H 0.97004 * 120.00259 * 355.71209 * 15 13 12 35 35 H 1.07998 * 119.91557 * 0.02717 * 17 16 15 36 36 H 1.07999 * 120.08414 * 180.23741 * 18 17 16 37 37 H 0.96997 * 119.99538 * 180.02562 * 23 22 20 38 38 H 1.07994 * 120.08165 * 179.97438 * 28 19 18 39 39 H 1.07995 * 119.91668 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2865 1.0856 0.0000 4 6 3.5874 0.7419 -0.0058 5 6 4.7269 1.6853 -0.0070 6 7 6.0308 1.3681 -0.0133 7 7 6.6938 2.4745 -0.0126 8 7 5.8650 3.4593 -0.0057 9 1 6.1095 4.3980 -0.0033 10 7 4.6596 3.0035 -0.0069 11 6 3.6830 -0.6102 -0.0093 12 6 2.3037 -1.1097 -0.0061 13 6 1.8675 -2.5176 -0.0082 14 8 0.6816 -2.7867 -0.0050 15 7 2.7830 -3.5066 -0.0139 16 6 2.3741 -4.8336 0.0741 17 6 3.1560 -5.7562 0.7696 18 6 2.7591 -7.0573 0.8643 19 6 1.5620 -7.4715 0.2478 20 6 1.1479 -8.8178 0.3359 21 1 0.6347 -9.2805 -0.4942 22 6 1.4023 -9.5534 1.4985 23 7 2.0996 -9.0214 2.4698 24 14 0.7465 -11.2946 1.6643 25 1 -0.0055 -11.6593 0.4369 26 1 1.8808 -12.2352 1.8485 27 1 -0.1576 -11.3731 2.8398 28 6 0.7804 -6.5352 -0.4574 29 6 1.1874 -5.2363 -0.5390 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3633 0.8928 -0.5090 32 1 -0.3634 -0.8871 -0.5187 33 1 4.5886 -1.1988 -0.0137 34 1 3.7271 -3.2933 -0.0793 35 1 4.0757 -5.4381 1.2379 36 1 3.3636 -7.7696 1.4063 37 1 2.2763 -9.5315 3.2757 38 1 -0.1382 -6.8457 -0.9329 39 1 0.5896 -4.5175 -1.0796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592502735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:10 Heat of formation + Delta-G solvation = 130.636185 kcal Electronic energy + Delta-G solvation = -27018.410390 eV Core-core repulsion = 22930.933991 eV Total energy + Delta-G solvation = -4087.476399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.91003 -42.82731 -39.49420 -37.21660 -34.97974 -34.48989 -33.98403 -33.35444 -32.76113 -31.70809 -29.57274 -28.97610 -27.64799 -25.33862 -25.00536 -24.00671 -23.03639 -21.74225 -21.20952 -20.27419 -19.70776 -19.31821 -17.93844 -17.67584 -17.28206 -16.56616 -16.35922 -15.79866 -15.25665 -15.09410 -14.52777 -14.45117 -13.89339 -13.70469 -13.31581 -13.25027 -13.13363 -12.93180 -12.77829 -12.63053 -12.12013 -11.97780 -11.87448 -11.69217 -11.58713 -11.54170 -11.35132 -11.15767 -10.97177 -10.72732 -10.03696 -9.93633 -9.48922 -9.43705 -9.17518 -8.87761 -8.64781 -7.52869 -6.84327 -6.60539 -4.32684 0.43654 0.86495 1.40044 1.64674 2.13050 2.31456 2.70729 3.10513 3.10662 3.15061 3.17842 3.33302 3.62619 3.75537 3.95921 3.99711 4.41205 4.65374 4.71290 4.76653 4.91337 5.12598 5.27477 5.40807 5.47814 5.56569 5.68275 5.88629 5.93021 6.04454 6.22325 6.46269 6.68992 6.76817 6.94908 7.08590 7.22099 7.31307 7.65754 7.66765 7.76139 7.88004 8.08235 8.27243 8.33244 8.63469 8.74342 8.94309 9.01602 10.30422 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.705348 B =13386.047038 C =14296.867874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.102 3.898 3 O -0.160 6.160 4 C 0.041 3.959 5 C 0.258 3.742 6 N -0.251 5.251 7 N -0.041 5.041 8 N -0.224 5.224 9 H 0.478 0.522 10 N -0.283 5.283 11 C -0.103 4.103 12 C -0.235 4.235 13 C 0.575 3.425 14 O -0.529 6.529 15 N -0.640 5.640 16 C 0.004 3.996 17 C -0.119 4.119 18 C -0.141 4.141 19 C 0.100 3.900 20 C -0.460 4.460 21 H 0.076 0.924 22 C 0.069 3.931 23 N -0.811 5.811 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.206 4.206 29 C -0.084 4.084 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.171 0.829 34 H 0.397 0.603 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 22.185 -3.303 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.055 6.055 4 C -0.010 4.010 5 C -0.021 4.021 6 N -0.125 5.125 7 N -0.036 5.036 8 N -0.070 5.070 9 H 0.333 0.667 10 N -0.135 5.135 11 C -0.126 4.126 12 C -0.239 4.239 13 C 0.363 3.637 14 O -0.408 6.408 15 N -0.282 5.282 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.161 4.161 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.094 0.906 22 C -0.146 4.146 23 N -0.438 5.438 24 Si 0.740 3.260 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.226 4.226 29 C -0.104 4.104 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.189 0.811 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.409 22.411 -3.059 23.256 hybrid contribution 0.139 -0.108 0.339 0.382 sum 5.548 22.302 -2.720 23.143 Atomic orbital electron populations 1.20734 0.82790 1.05469 1.04963 1.23037 0.94100 0.82269 0.95824 1.83729 1.14978 1.35018 1.71771 1.17394 0.79728 0.89770 1.14139 1.21869 0.90748 0.86752 1.02778 1.76195 1.01183 1.17482 1.17645 1.78975 1.19916 0.90219 1.14514 1.47711 1.00918 1.12661 1.45754 0.66710 1.75164 1.05107 1.11716 1.21552 1.22966 0.97678 0.91928 0.99988 1.21298 0.92194 0.94821 1.15614 1.17046 0.85965 0.83027 0.77693 1.90747 1.16278 1.83382 1.50424 1.42753 1.09096 1.05092 1.71211 1.17242 1.00627 0.81818 1.09151 1.20327 0.99206 0.94490 0.99900 1.21191 0.97260 0.94343 1.03331 1.17744 0.89769 0.93041 0.89736 1.19536 1.33045 0.95869 1.00599 0.90551 1.25888 0.93530 0.99794 0.95413 1.69774 1.30933 1.37386 1.05739 0.86150 0.79210 0.81471 0.79161 1.18588 1.20019 1.20014 1.20804 1.00437 0.92692 1.08624 1.20402 0.95578 0.95745 0.98674 0.88786 0.90222 0.86498 0.81119 0.76954 0.88997 0.85018 0.91204 0.88568 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.88 36.01 0.36 -0.50 16 2 C 0.10 1.28 7.37 -34.90 -0.26 1.03 16 3 O -0.16 -1.97 10.54 6.74 0.07 -1.89 16 4 C 0.04 0.49 7.22 -36.57 -0.26 0.23 16 5 C 0.26 2.92 8.20 -156.25 -1.28 1.64 16 6 N -0.25 -2.82 12.52 32.09 0.40 -2.42 16 7 N -0.04 -0.37 13.46 60.35 0.81 0.44 16 8 N -0.22 -1.42 7.90 60.35 0.48 -0.94 16 9 H 0.48 0.55 8.96 -340.33 -3.05 -2.50 16 10 N -0.28 -2.71 12.41 32.10 0.40 -2.31 16 11 C -0.10 -1.23 10.51 -37.13 -0.39 -1.62 16 12 C -0.23 -3.29 6.30 -103.35 -0.65 -3.94 16 13 C 0.57 10.06 7.64 -12.54 -0.10 9.97 16 14 O -0.53 -10.73 12.24 5.27 0.06 -10.66 16 15 N -0.64 -11.32 5.29 -10.72 -0.06 -11.37 16 16 C 0.00 0.08 6.30 -83.60 -0.53 -0.44 16 17 C -0.12 -2.70 9.90 -39.78 -0.39 -3.09 16 18 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 19 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 20 C -0.46 -12.21 9.02 -37.86 -0.34 -12.55 16 21 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 22 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 23 N -0.81 -21.06 10.60 55.55 0.59 -20.48 16 24 Si 0.92 18.99 29.56 -169.99 -5.03 13.96 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.21 -5.14 9.74 -39.26 -0.38 -5.53 16 29 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 1.39 6.48 -51.93 -0.34 1.06 16 33 H 0.17 1.69 7.73 -52.48 -0.41 1.28 16 34 H 0.40 5.64 7.99 -40.82 -0.33 5.31 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.11 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 348.18 15.07 5.25 5.25 Total: -1.00 -32.43 348.18 -8.62 -41.05 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.00 Total: 6.75 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -5.60 Total: -17.38 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 2.62 Total: -37.07 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.14 Total: -12.56 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.43 -8.62 -41.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592502735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.688 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds