Wall clock time and date at job start Tue Mar 31 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33642 * 125.67749 * 2 1 4 4 C 1.34560 * 110.87881 * 180.26550 * 3 2 1 5 5 C 1.47935 * 125.57804 * 180.02562 * 4 3 2 6 6 N 1.34200 * 126.70036 * 180.02562 * 5 4 3 7 7 N 1.28984 * 107.25315 * 179.97438 * 6 5 4 8 8 N 1.28719 * 108.98960 * 0.02562 * 7 6 5 9 9 H 0.97003 * 125.31966 * 179.97438 * 8 7 6 10 10 N 1.28872 * 109.36549 * 359.76293 * 8 7 6 11 11 C 1.35552 * 108.84410 * 359.97438 * 4 3 2 12 12 C 1.36605 * 125.67466 * 180.31271 * 2 1 3 13 13 C 1.47390 * 127.11236 * 359.73223 * 12 2 1 14 14 O 1.21613 * 119.99777 * 0.02562 * 13 12 2 15 15 N 1.34773 * 119.99801 * 180.02562 * 13 12 2 16 16 C 1.39137 * 119.99882 * 175.71438 * 15 13 12 17 17 C 1.39508 * 119.83601 * 215.02638 * 16 15 13 18 18 C 1.36359 * 120.16740 * 179.75455 * 17 16 15 19 19 C 1.40879 * 119.83022 * 0.54765 * 18 17 16 20 20 C 1.41135 * 120.16225 * 179.69244 * 19 18 17 21 21 H 1.08005 * 120.00409 * 214.80099 * 20 19 18 22 22 C 1.39904 * 120.00352 * 34.79997 * 20 19 18 23 23 N 1.30877 * 119.99510 * 355.56545 * 22 20 19 24 24 Si 1.86799 * 120.00049 * 175.56260 * 22 20 19 25 25 H 1.48490 * 109.47289 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.46946 * 120.00479 * 24 22 20 27 27 H 1.48502 * 109.46765 * 239.99890 * 24 22 20 28 28 C 1.40883 * 119.67646 * 359.70998 * 19 18 17 29 29 C 1.36361 * 119.82799 * 0.02562 * 28 19 18 30 30 H 1.08995 * 109.47258 * 269.69107 * 1 2 3 31 31 H 1.09007 * 109.46906 * 29.68788 * 1 2 3 32 32 H 1.08999 * 109.47464 * 149.68741 * 1 2 3 33 33 H 1.08005 * 127.06954 * 180.02562 * 11 4 3 34 34 H 0.97004 * 120.00259 * 355.71209 * 15 13 12 35 35 H 1.07998 * 119.91557 * 0.02717 * 17 16 15 36 36 H 1.07999 * 120.08414 * 180.23741 * 18 17 16 37 37 H 0.96997 * 119.99538 * 180.02562 * 23 22 20 38 38 H 1.07994 * 120.08165 * 179.97438 * 28 19 18 39 39 H 1.07995 * 119.91668 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2865 1.0856 0.0000 4 6 3.5874 0.7419 -0.0058 5 6 4.7269 1.6853 -0.0070 6 7 6.0308 1.3681 -0.0133 7 7 6.6938 2.4745 -0.0126 8 7 5.8650 3.4593 -0.0057 9 1 6.1095 4.3980 -0.0033 10 7 4.6596 3.0035 -0.0069 11 6 3.6830 -0.6102 -0.0093 12 6 2.3037 -1.1097 -0.0061 13 6 1.8675 -2.5176 -0.0082 14 8 0.6816 -2.7867 -0.0050 15 7 2.7830 -3.5066 -0.0139 16 6 2.3741 -4.8336 0.0741 17 6 3.1560 -5.7562 0.7696 18 6 2.7591 -7.0573 0.8643 19 6 1.5620 -7.4715 0.2478 20 6 1.1479 -8.8178 0.3359 21 1 0.6347 -9.2805 -0.4942 22 6 1.4023 -9.5534 1.4985 23 7 2.0996 -9.0214 2.4698 24 14 0.7465 -11.2946 1.6643 25 1 -0.0055 -11.6593 0.4369 26 1 1.8808 -12.2352 1.8485 27 1 -0.1576 -11.3731 2.8398 28 6 0.7804 -6.5352 -0.4574 29 6 1.1874 -5.2363 -0.5390 30 1 -0.3633 -0.0055 1.0276 31 1 -0.3633 0.8928 -0.5090 32 1 -0.3634 -0.8871 -0.5187 33 1 4.5886 -1.1988 -0.0137 34 1 3.7271 -3.2933 -0.0793 35 1 4.0757 -5.4381 1.2379 36 1 3.3636 -7.7696 1.4063 37 1 2.2763 -9.5315 3.2757 38 1 -0.1382 -6.8457 -0.9329 39 1 0.5896 -4.5175 -1.0796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592502735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:09 Heat of formation + Delta-G solvation = 109.482379 kcal Electronic energy + Delta-G solvation = -27019.327688 eV Core-core repulsion = 22930.933991 eV Total energy + Delta-G solvation = -4088.393697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.63027 -43.80594 -41.04011 -38.98635 -36.18839 -35.70474 -34.84388 -34.73331 -34.12185 -32.59571 -31.44697 -30.77244 -28.64530 -26.96432 -25.80652 -25.03530 -24.19443 -23.24223 -22.76070 -21.74558 -20.78254 -20.31067 -19.26270 -18.92531 -18.41677 -17.96065 -17.50299 -17.10464 -16.95335 -16.17100 -16.02195 -15.60816 -15.29964 -15.01645 -14.77243 -14.48222 -14.21666 -14.15183 -13.96159 -13.88575 -13.56021 -13.50293 -13.19984 -12.87973 -12.83881 -12.73675 -12.59981 -12.45907 -12.34262 -12.30346 -11.75844 -11.35816 -11.20311 -10.98085 -10.83871 -10.60607 -9.59556 -9.43090 -8.69460 -8.47960 -6.30205 -0.34855 0.06826 0.29869 0.91397 0.93556 1.18504 1.41492 1.43204 1.44510 1.51275 1.56877 2.23399 2.25693 2.33887 2.57627 2.84072 3.14237 3.52316 3.61972 3.70926 3.75248 4.08886 4.23179 4.41116 4.44925 4.52366 4.58085 4.63021 4.68519 4.96318 5.00381 5.14241 5.17616 5.21518 5.37271 5.46256 5.49684 5.72177 5.74929 5.94255 6.05237 6.16788 6.41732 6.69093 6.72870 6.93644 6.99610 7.02401 7.34462 8.44687 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.002091 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.705348 B =13386.047038 C =14296.867874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.115 3.885 3 O -0.158 6.158 4 C 0.039 3.961 5 C 0.243 3.757 6 N -0.271 5.271 7 N -0.042 5.042 8 N -0.191 5.191 9 H 0.499 0.501 10 N -0.285 5.285 11 C -0.097 4.097 12 C -0.258 4.258 13 C 0.578 3.422 14 O -0.560 6.560 15 N -0.636 5.636 16 C 0.022 3.978 17 C -0.118 4.118 18 C -0.159 4.159 19 C 0.067 3.933 20 C -0.496 4.496 21 H 0.073 0.927 22 C 0.026 3.974 23 N -0.841 5.841 24 Si 0.988 3.012 25 H -0.260 1.260 26 H -0.264 1.264 27 H -0.270 1.270 28 C -0.219 4.219 29 C -0.094 4.094 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.190 0.810 34 H 0.415 0.585 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.284 0.716 38 H 0.098 0.902 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 24.229 -3.130 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 O -0.053 6.053 4 C -0.012 4.012 5 C -0.036 4.036 6 N -0.145 5.145 7 N -0.037 5.037 8 N -0.043 5.043 9 H 0.359 0.641 10 N -0.138 5.138 11 C -0.120 4.120 12 C -0.262 4.262 13 C 0.368 3.632 14 O -0.441 6.441 15 N -0.280 5.280 16 C -0.071 4.071 17 C -0.138 4.138 18 C -0.179 4.179 19 C 0.064 3.936 20 C -0.526 4.526 21 H 0.091 0.909 22 C -0.185 4.185 23 N -0.469 5.469 24 Si 0.809 3.191 25 H -0.184 1.184 26 H -0.189 1.189 27 H -0.195 1.195 28 C -0.239 4.239 29 C -0.114 4.114 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.207 0.793 34 H 0.253 0.747 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.211 24.515 -2.898 25.455 hybrid contribution -0.037 -0.409 0.250 0.480 sum 6.173 24.106 -2.648 25.025 Atomic orbital electron populations 1.20817 0.81380 1.06058 1.05740 1.23389 0.94898 0.81945 0.93782 1.83751 1.15224 1.34716 1.71593 1.17546 0.79769 0.90075 1.13839 1.21799 0.90610 0.87200 1.04037 1.76186 1.01225 1.18519 1.18549 1.78926 1.19873 0.90307 1.14639 1.47771 0.99786 1.13478 1.43278 0.64133 1.75120 1.06230 1.11129 1.21362 1.23094 0.97321 0.92092 0.99468 1.20957 0.93726 0.93063 1.18476 1.17440 0.85362 0.84159 0.76208 1.90735 1.17634 1.84136 1.51554 1.42650 1.10388 1.03477 1.71485 1.17278 0.99390 0.83596 1.06845 1.20559 1.00298 0.93548 0.99435 1.21163 0.97208 0.95482 1.04082 1.18058 0.90714 0.93786 0.91022 1.19746 1.34722 0.96633 1.01549 0.90901 1.26742 0.93414 1.03833 0.94555 1.69839 1.31742 1.39054 1.06284 0.85061 0.78744 0.76200 0.79060 1.18363 1.18852 1.19486 1.20937 1.00683 0.93341 1.08894 1.20539 0.96483 0.95224 0.99137 0.87750 0.87292 0.88216 0.79326 0.74738 0.85908 0.86399 0.90538 0.88381 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.88 71.24 0.70 -0.88 16 2 C 0.12 2.69 7.37 25.30 0.19 2.87 16 3 O -0.16 -3.55 10.54 1.19 0.01 -3.54 16 4 C 0.04 0.86 7.22 24.22 0.17 1.03 16 5 C 0.24 5.01 8.20 137.12 1.12 6.13 16 6 N -0.27 -5.58 12.52 -52.40 -0.66 -6.24 16 7 N -0.04 -0.67 13.46 37.02 0.50 -0.17 16 8 N -0.19 -1.92 7.90 37.02 0.29 -1.63 16 9 H 0.50 -0.32 8.96 -347.51 -3.12 -3.44 16 10 N -0.28 -4.76 12.41 -52.35 -0.65 -5.41 16 11 C -0.10 -2.14 10.51 23.86 0.25 -1.89 16 12 C -0.26 -6.85 6.30 -19.04 -0.12 -6.97 16 13 C 0.58 19.71 7.64 86.65 0.66 20.38 16 14 O -0.56 -22.56 12.24 -4.07 -0.05 -22.61 16 15 N -0.64 -21.70 5.29 -306.08 -1.62 -23.32 16 16 C 0.02 0.97 6.30 38.60 0.24 1.21 16 17 C -0.12 -5.33 9.90 22.14 0.22 -5.11 16 18 C -0.16 -8.35 8.61 22.48 0.19 -8.16 16 19 C 0.07 3.67 5.55 -21.27 -0.12 3.56 16 20 C -0.50 -27.31 9.02 23.39 0.21 -27.10 16 21 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 22 C 0.03 1.35 5.42 85.24 0.46 1.82 16 23 N -0.84 -44.65 10.60 21.82 0.23 -44.42 16 24 Si 0.99 39.38 29.56 68.60 2.03 41.41 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 27 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 28 C -0.22 -11.30 9.74 22.48 0.22 -11.08 16 29 C -0.09 -4.47 8.61 22.14 0.19 -4.28 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.10 2.31 6.48 -2.39 -0.02 2.29 16 33 H 0.19 3.31 7.73 -2.91 -0.02 3.29 16 34 H 0.42 10.99 7.99 -92.71 -0.74 10.25 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.12 6.45 6.13 -2.91 -0.02 6.43 16 37 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -71.41 348.18 2.00 -69.41 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -2.69 Total: 24.98 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.60 Total: -28.47 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.90 Total: -81.19 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -71.41 2.00 -69.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592502735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.892 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds