Wall clock time and date at job start Tue Mar 31 2020 22:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46715 * 269.99729 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99761 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00009 * 3 2 1 7 7 C 1.38649 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00018 * 185.05713 * 9 7 2 11 11 C 1.38875 * 120.06911 * 354.45754 * 10 9 7 12 12 C 1.38102 * 119.93078 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06328 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92532 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47324 * 90.00325 * 14 13 12 16 16 C 1.35583 * 119.56133 * 89.99689 * 15 14 13 17 17 C 1.36445 * 120.55392 * 180.02562 * 16 15 14 18 18 C 1.48455 * 120.14862 * 179.97438 * 17 16 15 19 19 N 1.34046 * 126.67200 * 359.97438 * 18 17 16 20 20 N 1.28986 * 107.26864 * 180.02562 * 19 18 17 21 21 N 1.28723 * 108.94696 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.34293 * 180.02562 * 21 20 19 23 23 N 1.28876 * 109.31812 * 0.02562 * 21 20 19 24 24 C 1.41155 * 119.70756 * 0.24896 * 17 16 15 25 25 C 1.36185 * 119.15742 * 359.51865 * 24 17 16 26 26 C 1.34600 * 119.55989 * 270.02274 * 15 14 13 27 27 O 1.22050 * 119.86335 * 359.97438 * 26 15 14 28 28 C 1.38295 * 120.14373 * 0.25500 * 13 12 11 29 29 C 1.38106 * 120.06741 * 359.44861 * 28 13 12 30 30 H 0.97002 * 119.99910 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.03232 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96546 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.47324 * 330.00172 * 14 13 12 34 34 H 1.09000 * 109.47226 * 209.99850 * 14 13 12 35 35 H 1.07988 * 119.72343 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.42332 * 179.72905 * 24 17 16 37 37 H 1.07998 * 120.28315 * 180.23089 * 25 24 17 38 38 H 1.08008 * 119.96763 * 179.70589 * 28 13 12 39 39 H 1.08000 * 120.03131 * 180.27816 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 3.4572 -3.4394 0.0951 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8203 0.3245 14 6 4.3848 -7.0816 0.4423 15 7 4.6556 -7.3580 1.8553 16 6 3.7878 -8.1195 2.5662 17 6 4.0197 -8.3892 3.8834 18 6 3.0632 -9.2236 4.6534 19 7 1.9335 -9.7785 4.1922 20 7 1.3941 -10.4200 5.1726 21 7 2.1358 -10.2889 6.2164 22 1 1.9530 -10.6758 7.0869 23 7 3.1595 -9.5629 5.9235 24 6 5.1702 -7.8664 4.5125 25 6 6.0363 -7.1070 3.7861 26 6 5.7622 -6.8521 2.4307 27 8 6.5308 -6.1688 1.7734 28 6 2.1874 -5.8890 0.3315 29 6 1.4366 -4.7344 0.2294 30 1 -0.4850 0.8401 0.0004 31 1 3.9526 -2.4845 0.0005 32 1 5.2812 -4.5469 0.1945 33 1 5.3275 -6.9555 -0.0903 34 1 3.8312 -7.9145 0.0089 35 1 2.9052 -8.5153 2.0860 36 1 5.3629 -8.0690 5.5556 37 1 6.9241 -6.7010 4.2481 38 1 1.6953 -6.8463 0.4212 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:57 Heat of formation + Delta-G solvation = 127.609869 kcal Electronic energy + Delta-G solvation = -27524.817474 eV Core-core repulsion = 23437.209844 eV Total energy + Delta-G solvation = -4087.607630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.66474 -41.47854 -39.06003 -37.18031 -36.88207 -35.03259 -34.46003 -33.14910 -32.36482 -30.46751 -30.19445 -29.81326 -26.45673 -25.28582 -24.84304 -24.73344 -23.32624 -22.19900 -21.92381 -20.61079 -19.58965 -18.06354 -17.66527 -17.36550 -17.31227 -16.93495 -16.59272 -15.99688 -15.18279 -14.69438 -14.56467 -14.46029 -14.27161 -14.15944 -13.68823 -13.50707 -13.22548 -12.85616 -12.69035 -12.64442 -12.52877 -12.18176 -11.96576 -11.60555 -11.60060 -11.45777 -11.35675 -11.34899 -10.91927 -10.71914 -10.61131 -10.47279 -10.07564 -9.96949 -9.39130 -8.89876 -8.25513 -8.01647 -7.32729 -6.51741 -4.10175 0.57906 0.84364 1.20577 1.88463 2.04637 2.17161 2.34995 2.74186 3.10856 3.12029 3.16863 3.49798 3.59147 3.92550 3.94341 4.41449 4.51629 4.63002 4.74688 4.97787 5.03379 5.09557 5.15287 5.18928 5.24617 5.29201 5.53227 5.72227 5.74195 5.80155 5.88535 6.02435 6.13244 6.14707 6.29199 6.34951 6.60164 6.82383 6.93433 6.98402 7.14256 7.31288 7.37683 7.73002 7.91757 7.93476 7.96050 8.93808 9.61364 10.65710 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002638 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.530734 B =10610.660381 C =11399.237556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.038 4.038 13 C -0.226 4.226 14 C 0.146 3.854 15 N -0.480 5.480 16 C 0.208 3.792 17 C -0.147 4.147 18 C 0.248 3.752 19 N -0.278 5.278 20 N -0.047 5.047 21 N -0.229 5.229 22 H 0.475 0.525 23 N -0.302 5.302 24 C 0.006 3.994 25 C -0.240 4.240 26 C 0.516 3.484 27 O -0.535 6.535 28 C -0.056 4.056 29 C -0.196 4.196 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.174 0.826 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.112 0.888 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -20.544 10.263 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.108 3.892 11 C -0.258 4.258 12 C -0.057 4.057 13 C -0.228 4.228 14 C 0.027 3.973 15 N -0.187 5.187 16 C 0.072 3.928 17 C -0.156 4.156 18 C -0.032 4.032 19 N -0.151 5.151 20 N -0.042 5.042 21 N -0.075 5.075 22 H 0.329 0.671 23 N -0.154 5.154 24 C -0.016 4.016 25 C -0.262 4.262 26 C 0.317 3.683 27 O -0.416 6.416 28 C -0.075 4.075 29 C -0.215 4.215 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.191 0.809 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.130 0.870 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.419 -20.186 9.809 23.343 hybrid contribution 0.555 0.864 0.726 1.258 sum 6.974 -19.321 10.536 23.086 Atomic orbital electron populations 1.70039 1.06013 1.27876 1.45440 1.25320 0.95864 0.98942 0.96304 0.85695 0.79007 0.79859 0.78832 1.19749 1.20166 1.19056 1.21380 0.91933 0.80702 1.52856 0.88873 1.83972 1.34560 1.11595 1.77324 1.19455 0.90326 0.88051 0.91352 1.21183 0.93714 0.99052 1.11815 1.20774 0.99038 0.91426 0.94468 1.19190 0.93386 0.93647 1.16575 1.20838 1.01641 0.96911 0.77934 1.45965 1.19739 1.39738 1.13239 1.21964 0.92575 0.86943 0.91300 1.16208 0.97913 1.09301 0.92190 1.23117 0.93740 0.98718 0.87642 1.76072 1.07359 1.10751 1.20918 1.78892 1.18259 1.16521 0.90572 1.47683 1.12662 1.33074 1.14079 0.67119 1.74901 1.10852 1.12969 1.16662 1.21239 0.89947 0.90298 1.00104 1.22024 1.03975 1.06627 0.93563 1.17228 0.80724 0.81234 0.89090 1.90957 1.46860 1.38820 1.64945 1.20484 0.92533 0.96915 0.97535 1.20169 0.99623 0.90209 1.11540 0.91878 0.85412 0.86603 0.87740 0.88682 0.80909 0.84171 0.82921 0.86962 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.95 9.49 30.88 0.29 -10.65 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.17 -4.87 9.76 0.03 0.00 -4.87 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.24 -5.24 9.17 -39.40 -0.36 -5.60 16 12 C -0.04 -0.73 9.68 -39.61 -0.38 -1.11 16 13 C -0.23 -3.67 5.46 -104.58 -0.57 -4.24 16 14 C 0.15 1.80 5.45 -5.19 -0.03 1.77 16 15 N -0.48 -5.94 2.56 -120.79 -0.31 -6.25 16 16 C 0.21 2.17 9.94 -16.54 -0.16 2.00 16 17 C -0.15 -1.53 5.84 -105.23 -0.62 -2.14 16 18 C 0.25 2.60 7.93 -156.30 -1.24 1.36 16 19 N -0.28 -3.09 12.18 32.15 0.39 -2.69 16 20 N -0.05 -0.45 13.47 60.35 0.81 0.37 16 21 N -0.23 -1.53 7.90 60.35 0.48 -1.05 16 22 H 0.47 0.86 8.96 -340.37 -3.05 -2.19 16 23 N -0.30 -2.72 12.13 32.17 0.39 -2.33 16 24 C 0.01 0.06 9.74 -39.21 -0.38 -0.32 16 25 C -0.24 -2.77 9.98 -39.43 -0.39 -3.17 16 26 C 0.52 7.40 7.40 -15.44 -0.11 7.28 16 27 O -0.54 -9.44 16.04 4.87 0.08 -9.36 16 28 C -0.06 -0.92 9.69 -39.61 -0.38 -1.30 16 29 C -0.20 -4.00 9.99 -39.39 -0.39 -4.39 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 32 H 0.12 2.13 7.49 -52.49 -0.39 1.73 16 33 H 0.10 1.33 7.32 -51.93 -0.38 0.95 16 34 H 0.09 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.17 1.46 7.79 -52.49 -0.41 1.05 16 36 H 0.14 1.09 7.94 -52.49 -0.42 0.67 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -35.04 351.26 -8.26 -43.30 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.03 Total: 2.23 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -5.09 Total: -15.86 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 2.52 Total: -36.22 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.04 -8.26 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.911 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds