Wall clock time and date at job start Tue Mar 31 2020 22:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46715 * 269.99729 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99761 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00009 * 3 2 1 7 7 C 1.38649 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00018 * 185.05713 * 9 7 2 11 11 C 1.38875 * 120.06911 * 354.45754 * 10 9 7 12 12 C 1.38102 * 119.93078 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06328 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.92532 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47324 * 90.00325 * 14 13 12 16 16 C 1.35583 * 119.56133 * 89.99689 * 15 14 13 17 17 C 1.36445 * 120.55392 * 180.02562 * 16 15 14 18 18 C 1.48455 * 120.14862 * 179.97438 * 17 16 15 19 19 N 1.34046 * 126.67200 * 359.97438 * 18 17 16 20 20 N 1.28986 * 107.26864 * 180.02562 * 19 18 17 21 21 N 1.28723 * 108.94696 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.34293 * 180.02562 * 21 20 19 23 23 N 1.28876 * 109.31812 * 0.02562 * 21 20 19 24 24 C 1.41155 * 119.70756 * 0.24896 * 17 16 15 25 25 C 1.36185 * 119.15742 * 359.51865 * 24 17 16 26 26 C 1.34600 * 119.55989 * 270.02274 * 15 14 13 27 27 O 1.22050 * 119.86335 * 359.97438 * 26 15 14 28 28 C 1.38295 * 120.14373 * 0.25500 * 13 12 11 29 29 C 1.38106 * 120.06741 * 359.44861 * 28 13 12 30 30 H 0.97002 * 119.99910 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.03232 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.96546 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.47324 * 330.00172 * 14 13 12 34 34 H 1.09000 * 109.47226 * 209.99850 * 14 13 12 35 35 H 1.07988 * 119.72343 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.42332 * 179.72905 * 24 17 16 37 37 H 1.07998 * 120.28315 * 180.23089 * 25 24 17 38 38 H 1.08008 * 119.96763 * 179.70589 * 28 13 12 39 39 H 1.08000 * 120.03131 * 180.27816 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 3.4572 -3.4394 0.0951 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8203 0.3245 14 6 4.3848 -7.0816 0.4423 15 7 4.6556 -7.3580 1.8553 16 6 3.7878 -8.1195 2.5662 17 6 4.0197 -8.3892 3.8834 18 6 3.0632 -9.2236 4.6534 19 7 1.9335 -9.7785 4.1922 20 7 1.3941 -10.4200 5.1726 21 7 2.1358 -10.2889 6.2164 22 1 1.9530 -10.6758 7.0869 23 7 3.1595 -9.5629 5.9235 24 6 5.1702 -7.8664 4.5125 25 6 6.0363 -7.1070 3.7861 26 6 5.7622 -6.8521 2.4307 27 8 6.5308 -6.1688 1.7734 28 6 2.1874 -5.8890 0.3315 29 6 1.4366 -4.7344 0.2294 30 1 -0.4850 0.8401 0.0004 31 1 3.9526 -2.4845 0.0005 32 1 5.2812 -4.5469 0.1945 33 1 5.3275 -6.9555 -0.0903 34 1 3.8312 -7.9145 0.0089 35 1 2.9052 -8.5153 2.0860 36 1 5.3629 -8.0690 5.5556 37 1 6.9241 -6.7010 4.2481 38 1 1.6953 -6.8463 0.4212 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:56 Heat of formation + Delta-G solvation = 103.543660 kcal Electronic energy + Delta-G solvation = -27525.861063 eV Core-core repulsion = 23437.209844 eV Total energy + Delta-G solvation = -4088.651219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.36624 -42.47287 -40.76109 -38.50292 -38.20103 -36.08104 -35.19633 -34.36698 -33.89651 -31.89695 -31.64792 -30.79538 -27.94908 -26.90244 -25.75038 -25.55950 -24.22356 -23.63630 -23.09858 -22.04196 -20.28963 -19.88326 -18.96837 -18.51695 -18.09793 -18.05126 -17.51290 -17.20882 -16.41720 -16.33049 -16.05844 -15.71952 -15.56458 -15.23575 -15.04642 -14.96123 -14.52498 -14.26113 -14.02508 -13.66736 -13.51558 -13.44938 -13.07886 -13.02703 -12.83092 -12.76904 -12.54065 -12.33369 -12.27802 -12.16051 -12.09095 -11.62502 -11.24378 -11.09189 -10.94871 -10.82495 -9.83297 -9.06410 -8.93697 -8.51777 -6.20003 -0.23397 0.08673 0.38584 0.48226 0.56033 1.32551 1.38661 1.44425 1.49472 1.49794 1.75086 2.14565 2.65493 2.73159 2.79727 3.12423 3.18864 3.46303 3.65781 3.77269 3.90767 3.93602 4.02785 4.12039 4.21778 4.31198 4.42434 4.51247 4.55560 4.62603 4.76612 4.96796 5.01179 5.03113 5.10600 5.19112 5.23137 5.42257 5.49899 5.66741 5.68758 5.69543 5.98371 6.00965 6.14620 6.93050 6.93579 7.20529 7.71188 8.70879 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002638 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.530734 B =10610.660381 C =11399.237556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.018 4.018 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.097 0.903 9 O -0.226 6.226 10 C 0.124 3.876 11 C -0.251 4.251 12 C -0.046 4.046 13 C -0.195 4.195 14 C 0.146 3.854 15 N -0.480 5.480 16 C 0.206 3.794 17 C -0.144 4.144 18 C 0.236 3.764 19 N -0.297 5.297 20 N -0.056 5.056 21 N -0.202 5.202 22 H 0.494 0.506 23 N -0.300 5.300 24 C 0.025 3.975 25 C -0.257 4.257 26 C 0.502 3.498 27 O -0.582 6.582 28 C -0.038 4.038 29 C -0.204 4.204 30 H 0.274 0.726 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 -23.870 11.663 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.114 0.886 9 O -0.132 6.132 10 C 0.073 3.927 11 C -0.271 4.271 12 C -0.065 4.065 13 C -0.196 4.196 14 C 0.027 3.973 15 N -0.186 5.186 16 C 0.071 3.929 17 C -0.153 4.153 18 C -0.044 4.044 19 N -0.169 5.169 20 N -0.051 5.051 21 N -0.052 5.052 22 H 0.352 0.648 23 N -0.153 5.153 24 C 0.003 3.997 25 C -0.278 4.278 26 C 0.306 3.694 27 O -0.467 6.467 28 C -0.057 4.057 29 C -0.224 4.224 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.164 0.836 35 H 0.217 0.783 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.153 -23.605 11.244 27.107 hybrid contribution 0.420 1.387 0.476 1.525 sum 7.573 -22.218 11.720 26.236 Atomic orbital electron populations 1.70166 1.07878 1.28932 1.48398 1.26540 0.96855 1.02583 0.95672 0.84630 0.77739 0.74740 0.79396 1.18585 1.19214 1.18137 1.21776 0.92382 0.81535 1.53526 0.88552 1.83938 1.35871 1.12593 1.80822 1.20018 0.91217 0.88304 0.93121 1.21204 0.93438 0.99717 1.12705 1.20943 0.99220 0.91704 0.94591 1.19706 0.93952 0.94367 1.11581 1.20965 1.01602 0.96326 0.78411 1.45750 1.19690 1.39982 1.13195 1.22340 0.92731 0.86371 0.91420 1.16357 0.97826 1.08700 0.92376 1.23099 0.93917 0.99334 0.88099 1.76042 1.07708 1.11414 1.21752 1.78853 1.18549 1.16724 0.90983 1.47758 1.11398 1.31556 1.14533 0.64754 1.74868 1.11338 1.12935 1.16139 1.21455 0.88894 0.88425 1.00936 1.22054 1.05132 1.07950 0.92677 1.17669 0.80887 0.80940 0.89901 1.90934 1.48526 1.41243 1.65975 1.21016 0.92341 0.97696 0.94602 1.20523 1.00337 0.90234 1.11274 0.91663 0.87080 0.86184 0.88010 0.83582 0.78265 0.81889 0.82150 0.81431 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.33 13.67 21.61 0.30 -56.03 16 2 C -0.02 -1.06 5.49 84.83 0.47 -0.59 16 3 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.42 -24.71 9.49 67.92 0.64 -24.07 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.68 9.76 -22.81 -0.22 -13.91 16 10 C 0.12 6.21 6.65 22.58 0.15 6.36 16 11 C -0.25 -11.52 9.17 22.39 0.21 -11.31 16 12 C -0.05 -1.72 9.68 22.25 0.22 -1.51 16 13 C -0.19 -5.75 5.46 -19.83 -0.11 -5.86 16 14 C 0.15 3.01 5.45 85.63 0.47 3.47 16 15 N -0.48 -10.28 2.56 -654.25 -1.68 -11.96 16 16 C 0.21 3.42 9.94 83.69 0.83 4.26 16 17 C -0.14 -2.48 5.84 -20.26 -0.12 -2.60 16 18 C 0.24 4.10 7.93 137.38 1.09 5.19 16 19 N -0.30 -5.56 12.18 -52.18 -0.64 -6.20 16 20 N -0.06 -0.88 13.47 37.02 0.50 -0.38 16 21 N -0.20 -2.00 7.90 37.02 0.29 -1.71 16 22 H 0.49 0.08 8.96 -347.54 -3.12 -3.04 16 23 N -0.30 -4.33 12.13 -52.13 -0.63 -4.96 16 24 C 0.03 0.42 9.74 22.51 0.22 0.64 16 25 C -0.26 -5.45 9.98 22.37 0.22 -5.22 16 26 C 0.50 13.57 7.40 84.85 0.63 14.20 16 27 O -0.58 -20.29 16.04 -5.48 -0.09 -20.38 16 28 C -0.04 -1.12 9.69 22.25 0.22 -0.91 16 29 C -0.20 -8.25 9.99 22.39 0.22 -8.02 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 32 H 0.12 4.43 7.49 -2.91 -0.02 4.40 16 33 H 0.10 2.29 7.32 -2.39 -0.02 2.27 16 34 H 0.15 1.62 7.95 -2.39 -0.02 1.60 16 35 H 0.20 2.24 7.79 -2.92 -0.02 2.21 16 36 H 0.16 1.94 7.94 -2.91 -0.02 1.92 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 39 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -83.44 351.26 3.24 -80.20 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -1.97 Total: 15.57 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 5.35 Total: -25.97 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.86 Total: -81.24 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.31 Total: -34.29 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -83.44 3.24 -80.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.748 kcal (2) G-P(sol) polarization free energy of solvation -83.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds