Wall clock time and date at job start Tue Mar 31 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99689 * 2 1 4 4 H 1.48507 * 109.47371 * 239.99921 * 3 2 1 5 5 H 1.48501 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47225 * 120.00038 * 3 2 1 7 7 C 1.39943 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99942 * 197.84708 * 7 2 1 9 9 C 1.41397 * 119.99775 * 17.84608 * 7 2 1 10 10 C 1.40718 * 120.24144 * 204.38657 * 9 7 2 11 11 C 1.37616 * 119.74569 * 180.02562 * 10 9 7 12 12 C 1.38644 * 120.24596 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74652 * 179.97438 * 12 11 10 14 14 N 1.46494 * 109.47140 * 89.99838 * 13 12 11 15 15 C 1.34778 * 120.00234 * 179.97438 * 14 13 12 16 16 O 1.21720 * 119.99619 * 0.02562 * 15 14 13 17 17 C 1.46548 * 120.00289 * 179.97438 * 15 14 13 18 18 C 1.37738 * 125.95703 * 180.02562 * 17 15 14 19 19 C 1.39908 * 106.75706 * 179.71481 * 18 17 15 20 20 C 1.36458 * 107.09582 * 0.41030 * 19 18 17 21 21 C 1.47816 * 125.65207 * 179.84897 * 20 19 18 22 22 N 1.34232 * 126.71251 * 359.74298 * 21 20 19 23 23 N 1.28980 * 107.25261 * 179.97438 * 22 21 20 24 24 N 1.28714 * 109.00167 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.30801 * 180.02562 * 24 23 22 26 26 N 1.28865 * 109.37925 * 359.97438 * 24 23 22 27 27 O 1.34338 * 108.69414 * 359.58279 * 20 19 18 28 28 C 1.38632 * 120.49820 * 0.25168 * 12 11 10 29 29 C 1.37613 * 120.25047 * 359.44740 * 28 12 11 30 30 H 0.96996 * 120.00229 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.12919 * 359.97438 * 10 9 7 32 32 H 1.07996 * 119.87640 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.46957 * 329.99635 * 13 12 11 34 34 H 1.08998 * 109.46647 * 209.99277 * 13 12 11 35 35 H 0.97003 * 119.99971 * 359.97438 * 14 13 12 36 36 H 1.08002 * 126.62265 * 359.97438 * 18 17 15 37 37 H 1.07998 * 126.45080 * 180.25899 * 19 18 17 38 38 H 1.07999 * 119.87225 * 179.70838 * 28 12 11 39 39 H 1.08002 * 120.12842 * 180.27478 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0491 -1.2345 0.2861 9 6 1.3521 -2.4068 -0.3764 10 6 1.8259 -3.6499 0.0824 11 6 1.1800 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1146 13 6 -0.6315 -6.0239 -1.5160 14 7 -1.6745 -6.3385 -0.5366 15 6 -2.4346 -7.4406 -0.6920 16 8 -2.2540 -8.1748 -1.6459 17 6 -3.4776 -7.7556 0.2881 18 6 -4.3207 -8.8442 0.2503 19 6 -5.1463 -8.7542 1.3762 20 6 -4.7872 -7.6218 2.0476 21 6 -5.4013 -7.1310 3.2993 22 7 -6.4070 -7.7046 3.9784 23 7 -6.6434 -6.9656 5.0088 24 7 -5.8350 -5.9640 5.0004 25 1 -5.8073 -5.2604 5.6676 26 7 -5.0675 -6.0425 3.9682 27 8 -3.7791 -7.0301 1.3855 28 6 -0.4053 -3.5316 -1.5771 29 6 0.2212 -2.3618 -1.2124 30 1 -0.4850 0.8400 -0.0004 31 1 2.6937 -3.6961 0.7237 32 1 1.5421 -5.7617 0.0604 33 1 0.0913 -6.8389 -1.5515 34 1 -1.0835 -5.8959 -2.4996 35 1 -1.8182 -5.7535 0.2238 36 1 -4.3381 -9.6199 -0.5010 37 1 -5.9233 -9.4489 1.6593 38 1 -1.2705 -3.4998 -2.2227 39 1 -0.1509 -1.4132 -1.5703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592681413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:27 Heat of formation + Delta-G solvation = 121.586626 kcal Electronic energy + Delta-G solvation = -26788.633429 eV Core-core repulsion = 22700.764612 eV Total energy + Delta-G solvation = -4087.868818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.87924 -42.87920 -39.34234 -37.70215 -34.97888 -34.85168 -33.92138 -33.56350 -33.20081 -30.79550 -29.84081 -29.38356 -27.15058 -25.30912 -24.95624 -23.73329 -22.11796 -21.94756 -21.11913 -20.33710 -20.16755 -19.61059 -18.45951 -17.64375 -17.42719 -16.92775 -16.53717 -15.79167 -15.42864 -14.83230 -14.59304 -14.45675 -14.01635 -13.66267 -13.56415 -13.39977 -13.27272 -13.13765 -12.79101 -12.56546 -12.11740 -12.05958 -11.84870 -11.73539 -11.55500 -11.52455 -11.18893 -11.09646 -10.80810 -10.51685 -10.28064 -10.27459 -9.75069 -9.52381 -9.26499 -8.96768 -8.62028 -7.61195 -7.49630 -6.90596 -4.50349 0.27822 0.76826 1.54314 1.67450 2.12598 2.42740 2.52206 2.94865 2.98148 2.99203 3.03850 3.16932 3.32172 3.55168 3.82346 4.00976 4.48416 4.56723 4.68092 4.85526 4.97531 5.34952 5.39748 5.55693 5.57747 5.74452 5.82720 5.95301 6.01228 6.16437 6.21794 6.30043 6.45653 6.65233 6.83411 6.93834 7.14202 7.22576 7.47428 7.59049 7.69154 7.77752 7.91799 7.97024 8.15072 8.19381 8.50032 8.74992 8.82819 10.03216 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002549 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.332263 B =10982.348948 C =13138.889926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.068 4.068 12 C -0.249 4.249 13 C 0.183 3.817 14 N -0.701 5.701 15 C 0.592 3.408 16 O -0.526 6.526 17 C -0.037 4.037 18 C -0.131 4.131 19 C -0.144 4.144 20 C 0.071 3.929 21 C 0.247 3.753 22 N -0.250 5.250 23 N -0.043 5.043 24 N -0.220 5.220 25 H 0.480 0.520 26 N -0.270 5.270 27 O -0.140 6.140 28 C -0.080 4.080 29 C -0.170 4.170 30 H 0.283 0.717 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.089 0.911 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -9.780 6.961 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.087 4.087 12 C -0.251 4.251 13 C 0.062 3.938 14 N -0.350 5.350 15 C 0.376 3.624 16 O -0.405 6.405 17 C -0.092 4.092 18 C -0.151 4.151 19 C -0.166 4.166 20 C 0.016 3.984 21 C -0.032 4.032 22 N -0.125 5.125 23 N -0.038 5.038 24 N -0.067 5.067 25 H 0.335 0.665 26 N -0.123 5.123 27 O -0.033 6.033 28 C -0.099 4.099 29 C -0.189 4.189 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.243 0.757 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.107 0.893 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.426 -9.834 6.860 16.563 hybrid contribution 0.483 1.571 0.620 1.757 sum -10.944 -8.263 7.480 15.620 Atomic orbital electron populations 1.69809 1.07655 1.29609 1.34003 1.25956 0.94758 1.01501 0.92103 0.86340 0.80181 0.79983 0.80121 1.18673 1.20245 1.18915 1.19644 0.98217 0.91297 1.39472 0.90260 1.17672 0.90843 0.92046 0.87944 1.20974 1.04004 0.92794 1.07184 1.20413 0.95049 0.96566 0.96641 1.18938 1.02230 0.92590 1.11364 1.20089 0.87766 0.95559 0.90410 1.46590 1.34936 1.24451 1.29019 1.16593 0.80021 0.82285 0.83466 1.90881 1.69302 1.50182 1.30114 1.22931 1.02109 0.94847 0.89286 1.22157 0.94955 0.98675 0.99336 1.21767 1.02492 0.97298 0.95052 1.18050 0.93364 0.94879 0.92074 1.21897 0.95209 0.90528 0.95610 1.76155 1.13358 1.22081 1.00913 1.78946 1.13651 0.95516 1.15686 1.47746 1.20178 1.20343 1.18415 0.66478 1.75288 1.17466 1.20506 0.99032 1.84134 1.42088 1.45796 1.31327 1.20562 0.97987 0.92547 0.98765 1.21309 0.99562 0.96778 1.01248 0.90608 0.88860 0.89298 0.91782 0.91730 0.75684 0.81117 0.81231 0.89317 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.95 55.55 0.61 -18.79 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 8 H 0.08 1.93 7.91 -52.48 -0.42 1.51 16 9 C 0.12 2.99 5.57 -106.83 -0.60 2.39 16 10 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 11 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 12 C -0.25 -5.04 5.27 -104.33 -0.55 -5.59 16 13 C 0.18 3.17 5.79 -5.20 -0.03 3.14 16 14 N -0.70 -11.31 5.54 -62.84 -0.35 -11.65 16 15 C 0.59 9.37 7.78 -12.91 -0.10 9.27 16 16 O -0.53 -9.45 16.87 5.17 0.09 -9.37 16 17 C -0.04 -0.50 7.16 -36.42 -0.26 -0.76 16 18 C -0.13 -1.47 10.65 -39.14 -0.42 -1.89 16 19 C -0.14 -1.47 10.78 -39.60 -0.43 -1.90 16 20 C 0.07 0.87 7.24 -36.31 -0.26 0.61 16 21 C 0.25 2.93 8.20 -156.23 -1.28 1.65 16 22 N -0.25 -2.81 12.53 32.07 0.40 -2.40 16 23 N -0.04 -0.40 13.46 60.35 0.81 0.41 16 24 N -0.22 -1.67 7.89 60.35 0.48 -1.19 16 25 H 0.48 1.34 8.96 -340.34 -3.05 -1.71 16 26 N -0.27 -3.02 12.41 32.09 0.40 -2.62 16 27 O -0.14 -1.93 10.42 3.78 0.04 -1.89 16 28 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 29 C -0.17 -4.18 8.70 -38.88 -0.34 -4.52 16 30 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 31 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.41 6.49 8.22 -40.82 -0.34 6.15 16 36 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -29.57 357.45 -9.22 -38.79 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.21 Total: 7.97 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -5.84 Total: -17.46 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 2.35 Total: -36.25 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.13 Total: -11.26 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.57 -9.22 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.379 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds