Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 119.99689 * 2 1 4 4 H 1.48507 * 109.47371 * 239.99921 * 3 2 1 5 5 H 1.48501 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47225 * 120.00038 * 3 2 1 7 7 C 1.39943 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99942 * 197.84708 * 7 2 1 9 9 C 1.41397 * 119.99775 * 17.84608 * 7 2 1 10 10 C 1.40718 * 120.24144 * 204.38657 * 9 7 2 11 11 C 1.37616 * 119.74569 * 180.02562 * 10 9 7 12 12 C 1.38644 * 120.24596 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74652 * 179.97438 * 12 11 10 14 14 N 1.46494 * 109.47140 * 89.99838 * 13 12 11 15 15 C 1.34778 * 120.00234 * 179.97438 * 14 13 12 16 16 O 1.21720 * 119.99619 * 0.02562 * 15 14 13 17 17 C 1.46548 * 120.00289 * 179.97438 * 15 14 13 18 18 C 1.37738 * 125.95703 * 180.02562 * 17 15 14 19 19 C 1.39908 * 106.75706 * 179.71481 * 18 17 15 20 20 C 1.36458 * 107.09582 * 0.41030 * 19 18 17 21 21 C 1.47816 * 125.65207 * 179.84897 * 20 19 18 22 22 N 1.34232 * 126.71251 * 359.74298 * 21 20 19 23 23 N 1.28980 * 107.25261 * 179.97438 * 22 21 20 24 24 N 1.28714 * 109.00167 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.30801 * 180.02562 * 24 23 22 26 26 N 1.28865 * 109.37925 * 359.97438 * 24 23 22 27 27 O 1.34338 * 108.69414 * 359.58279 * 20 19 18 28 28 C 1.38632 * 120.49820 * 0.25168 * 12 11 10 29 29 C 1.37613 * 120.25047 * 359.44740 * 28 12 11 30 30 H 0.96996 * 120.00229 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.12919 * 359.97438 * 10 9 7 32 32 H 1.07996 * 119.87640 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.46957 * 329.99635 * 13 12 11 34 34 H 1.08998 * 109.46647 * 209.99277 * 13 12 11 35 35 H 0.97003 * 119.99971 * 359.97438 * 14 13 12 36 36 H 1.08002 * 126.62265 * 359.97438 * 18 17 15 37 37 H 1.07998 * 126.45080 * 180.25899 * 19 18 17 38 38 H 1.07999 * 119.87225 * 179.70838 * 28 12 11 39 39 H 1.08002 * 120.12842 * 180.27478 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0491 -1.2345 0.2861 9 6 1.3521 -2.4068 -0.3764 10 6 1.8259 -3.6499 0.0824 11 6 1.1800 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1146 13 6 -0.6315 -6.0239 -1.5160 14 7 -1.6745 -6.3385 -0.5366 15 6 -2.4346 -7.4406 -0.6920 16 8 -2.2540 -8.1748 -1.6459 17 6 -3.4776 -7.7556 0.2881 18 6 -4.3207 -8.8442 0.2503 19 6 -5.1463 -8.7542 1.3762 20 6 -4.7872 -7.6218 2.0476 21 6 -5.4013 -7.1310 3.2993 22 7 -6.4070 -7.7046 3.9784 23 7 -6.6434 -6.9656 5.0088 24 7 -5.8350 -5.9640 5.0004 25 1 -5.8073 -5.2604 5.6676 26 7 -5.0675 -6.0425 3.9682 27 8 -3.7791 -7.0301 1.3855 28 6 -0.4053 -3.5316 -1.5771 29 6 0.2212 -2.3618 -1.2124 30 1 -0.4850 0.8400 -0.0004 31 1 2.6937 -3.6961 0.7237 32 1 1.5421 -5.7617 0.0604 33 1 0.0913 -6.8389 -1.5515 34 1 -1.0835 -5.8959 -2.4996 35 1 -1.8182 -5.7535 0.2238 36 1 -4.3381 -9.6199 -0.5010 37 1 -5.9233 -9.4489 1.6593 38 1 -1.2705 -3.4998 -2.2227 39 1 -0.1509 -1.4132 -1.5703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592681413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = 102.559811 kcal Electronic energy + Delta-G solvation = -26789.458494 eV Core-core repulsion = 22700.764612 eV Total energy + Delta-G solvation = -4088.693882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.66394 -43.82691 -40.65754 -39.41277 -36.43145 -35.71961 -35.19072 -34.70554 -34.16674 -32.31108 -31.22626 -30.94524 -28.69242 -26.47230 -25.76161 -25.15522 -23.19952 -22.90621 -22.83837 -21.84494 -21.42160 -20.39205 -19.56968 -19.24849 -18.44725 -17.90094 -17.52549 -17.26017 -17.02924 -16.19764 -16.03131 -15.63711 -15.28938 -15.27769 -15.02464 -14.27130 -14.22849 -14.15631 -14.13438 -13.83983 -13.63490 -13.58486 -13.44546 -12.83682 -12.73713 -12.63424 -12.52270 -12.37172 -12.35924 -12.12553 -11.66733 -11.44238 -11.29917 -11.15890 -11.03200 -10.24344 -9.62612 -9.41138 -9.30265 -8.68219 -6.38352 -0.64954 -0.02445 0.62256 0.79867 0.90742 1.12998 1.37381 1.39558 1.47194 1.50660 1.55311 2.01523 2.13826 2.19381 2.58126 2.75026 3.11533 3.65012 3.71939 3.75985 3.91232 4.14665 4.16641 4.30590 4.39862 4.50530 4.53633 4.65158 4.75620 4.82791 5.03501 5.12949 5.18529 5.25243 5.34671 5.42192 5.44305 5.58366 5.67293 5.89617 6.07301 6.18308 6.34801 6.41083 6.66513 6.89788 6.90393 6.93084 6.99371 8.27953 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002549 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.332263 B =10982.348948 C =13138.889926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.245 4.245 11 C -0.067 4.067 12 C -0.231 4.231 13 C 0.191 3.809 14 N -0.702 5.702 15 C 0.598 3.402 16 O -0.550 6.550 17 C -0.066 4.066 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.063 3.937 21 C 0.235 3.765 22 N -0.261 5.261 23 N -0.040 5.040 24 N -0.193 5.193 25 H 0.498 0.502 26 N -0.290 5.290 27 O -0.156 6.156 28 C -0.082 4.082 29 C -0.193 4.193 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.191 0.809 37 H 0.199 0.801 38 H 0.106 0.894 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 -10.958 7.574 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.264 4.264 11 C -0.086 4.086 12 C -0.233 4.233 13 C 0.069 3.931 14 N -0.351 5.351 15 C 0.385 3.615 16 O -0.431 6.431 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.152 4.152 20 C 0.008 3.992 21 C -0.045 4.045 22 N -0.135 5.135 23 N -0.035 5.035 24 N -0.044 5.044 25 H 0.358 0.642 26 N -0.143 5.143 27 O -0.051 6.051 28 C -0.101 4.101 29 C -0.213 4.213 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.208 0.792 37 H 0.216 0.784 38 H 0.124 0.876 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.472 -11.019 7.497 18.253 hybrid contribution 0.670 1.785 0.513 1.975 sum -11.802 -9.234 8.010 16.992 Atomic orbital electron populations 1.69860 1.08970 1.30759 1.34789 1.26754 0.95486 1.04507 0.91166 0.85273 0.78842 0.75680 0.80087 1.18533 1.19180 1.18347 1.19880 0.98459 0.92573 1.41641 0.90503 1.18006 0.91662 0.93101 0.88803 1.21170 1.04595 0.93046 1.07632 1.20710 0.94749 0.97025 0.96073 1.19194 1.01461 0.93233 1.09378 1.19942 0.88190 0.94177 0.90783 1.46391 1.34981 1.24937 1.28821 1.16678 0.79933 0.81467 0.83451 1.90862 1.70168 1.50787 1.31246 1.22579 1.03178 0.96366 0.89920 1.22482 0.93419 0.97704 0.99421 1.22094 1.02354 0.96792 0.93911 1.18405 0.93057 0.95415 0.92299 1.21947 0.95697 0.90949 0.95871 1.76145 1.13429 1.22621 1.01296 1.78892 1.13660 0.95701 1.15212 1.47780 1.18718 1.20158 1.17783 0.64227 1.75244 1.18387 1.20730 0.99956 1.84092 1.42951 1.46429 1.31626 1.20780 0.98197 0.92380 0.98698 1.21269 1.00443 0.97097 1.02464 0.90007 0.88377 0.86469 0.90804 0.91317 0.75574 0.79197 0.78377 0.87621 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.60 10.95 21.83 0.24 -41.36 16 2 C 0.04 1.80 5.14 85.26 0.44 2.24 16 3 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.50 -26.09 9.05 23.46 0.21 -25.88 16 8 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 9 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -11.54 9.80 22.73 0.22 -11.32 16 11 C -0.07 -2.75 9.67 22.22 0.21 -2.53 16 12 C -0.23 -9.12 5.27 -19.67 -0.10 -9.22 16 13 C 0.19 6.32 5.79 85.63 0.50 6.81 16 14 N -0.70 -21.86 5.54 -470.94 -2.61 -24.47 16 15 C 0.60 18.22 7.78 86.41 0.67 18.89 16 16 O -0.55 -19.00 16.87 -4.41 -0.07 -19.07 16 17 C -0.07 -1.73 7.16 24.32 0.17 -1.55 16 18 C -0.11 -2.21 10.65 22.56 0.24 -1.97 16 19 C -0.13 -2.32 10.78 22.26 0.24 -2.08 16 20 C 0.06 1.45 7.24 24.39 0.18 1.62 16 21 C 0.23 5.25 8.20 137.06 1.12 6.37 16 22 N -0.26 -5.39 12.53 -52.44 -0.66 -6.05 16 23 N -0.04 -0.68 13.46 37.02 0.50 -0.18 16 24 N -0.19 -2.61 7.89 37.02 0.29 -2.32 16 25 H 0.50 1.89 8.96 -347.51 -3.12 -1.23 16 26 N -0.29 -6.12 12.41 -52.40 -0.65 -6.77 16 27 O -0.16 -4.18 10.42 -9.41 -0.10 -4.27 16 28 C -0.08 -3.58 9.67 22.22 0.21 -3.37 16 29 C -0.19 -9.82 8.70 22.73 0.20 -9.62 16 30 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 31 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 34 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 35 H 0.41 12.72 8.22 -92.71 -0.76 11.96 16 36 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.10 5.40 6.16 -2.91 -0.02 5.39 16 Total: -1.00 -64.85 357.45 0.65 -64.20 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -2.72 Total: 28.35 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.40 Total: -27.19 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.89 Total: -81.14 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.17 Total: -23.35 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -64.85 0.65 -64.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.763 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds