Wall clock time and date at job start Tue Mar 31 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.47157 * 30.00447 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00021 * 3 2 1 7 7 C 1.37871 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00236 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46958 * 300.00725 * 9 7 2 11 11 N 1.46495 * 109.47433 * 179.97438 * 9 7 2 12 12 C 1.34779 * 119.99948 * 154.99636 * 11 9 7 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99948 * 180.02562 * 12 11 9 15 15 H 1.09000 * 110.45498 * 57.40236 * 14 12 11 16 16 C 1.54474 * 110.51188 * 294.64649 * 14 12 11 17 17 O 1.44427 * 104.80458 * 265.33449 * 16 14 12 18 18 C 1.44426 * 105.27356 * 319.48632 * 17 16 14 19 19 H 1.08996 * 110.37297 * 281.57053 * 18 17 16 20 20 C 1.53005 * 110.36818 * 159.34101 * 18 17 16 21 21 C 1.52998 * 109.46820 * 66.45887 * 20 18 17 22 22 C 1.50703 * 109.46917 * 179.97438 * 21 20 18 23 23 O 1.20827 * 119.99911 * 359.97438 * 22 21 20 24 24 O 1.34234 * 120.00104 * 180.02562 * 22 21 20 25 25 C 1.54475 * 104.80234 * 40.51337 * 18 17 16 26 26 C 1.53004 * 109.46756 * 60.00124 * 9 7 2 27 27 F 1.39901 * 109.47127 * 180.02562 * 26 9 7 28 28 F 1.39898 * 109.46956 * 300.00021 * 26 9 7 29 29 F 1.39897 * 109.47361 * 60.00249 * 26 9 7 30 30 H 0.97002 * 120.00745 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00274 * 335.00675 * 11 9 7 32 32 H 1.09006 * 110.37557 * 146.49972 * 16 14 12 33 33 H 1.09004 * 110.37781 * 24.16815 * 16 14 12 34 34 H 1.09005 * 109.46476 * 186.45378 * 20 18 17 35 35 H 1.08998 * 109.47515 * 306.45673 * 20 18 17 36 36 H 1.08996 * 109.47579 * 299.99492 * 21 20 18 37 37 H 1.08996 * 109.47696 * 59.99900 * 21 20 18 38 38 H 0.96694 * 117.00046 * 179.97438 * 24 22 21 39 39 H 1.09002 * 110.51057 * 94.66267 * 25 18 17 40 40 H 1.08996 * 110.51289 * 217.37234 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 2.2031 -3.6126 -0.0018 12 6 1.8374 -4.8124 0.4913 13 8 0.7200 -4.9704 0.9356 14 6 2.8169 -5.9577 0.4906 15 1 3.7200 -5.6869 1.0375 16 6 3.1613 -6.3744 -0.9564 17 8 2.2554 -7.4592 -1.2536 18 6 2.2036 -8.2528 -0.0480 19 1 3.0891 -8.8834 0.0295 20 6 0.9366 -9.1104 -0.0290 21 6 1.0098 -10.1529 -1.1465 22 6 -0.2378 -10.9981 -1.1274 23 8 -1.0970 -10.7884 -0.3042 24 8 -0.3940 -11.9845 -2.0243 25 6 2.1723 -7.2218 1.1020 26 6 0.3711 -2.5799 -1.2495 27 9 -0.3288 -3.7913 -1.2493 28 9 -0.5381 -1.5166 -1.2489 29 9 1.1749 -2.5055 -2.3921 30 1 -0.4851 0.8400 0.0004 31 1 3.0967 -3.4863 -0.3573 32 1 4.1948 -6.7156 -1.0173 33 1 2.9947 -5.5426 -1.6409 34 1 0.8539 -9.6149 0.9337 35 1 0.0648 -8.4743 -0.1821 36 1 1.0926 -9.6485 -2.1092 37 1 1.8815 -10.7891 -0.9935 38 1 -1.2106 -12.4998 -1.9724 39 1 1.1451 -7.0184 1.4047 40 1 2.7580 -7.5773 1.9497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:39 Heat of formation + Delta-G solvation = -321.471905 kcal Electronic energy + Delta-G solvation = -30931.342420 eV Core-core repulsion = 25910.509981 eV Total energy + Delta-G solvation = -5020.832439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.34497 -45.99849 -45.61216 -40.53286 -40.09115 -38.19601 -36.39358 -34.73094 -33.90086 -32.67003 -32.09591 -29.44135 -28.06612 -25.01902 -24.61416 -23.43465 -21.78180 -20.95912 -20.83011 -19.61145 -18.28302 -17.55886 -16.99073 -16.86015 -16.73439 -16.62519 -16.51594 -16.10183 -15.69155 -15.47631 -15.11460 -14.83620 -14.15135 -13.78754 -13.61552 -13.43998 -13.25940 -12.92508 -12.79678 -12.56530 -12.39678 -12.29583 -12.00968 -11.99814 -11.82745 -11.78391 -11.72679 -11.52772 -11.28900 -11.14477 -11.05864 -10.91476 -10.90281 -10.76883 -10.69574 -10.43812 -9.89191 -9.68777 -9.17252 -8.75842 -8.30976 -6.26091 -4.50769 2.02811 2.83417 3.10064 3.17089 3.22821 3.25051 3.71178 3.82823 4.18196 4.44057 4.53410 4.56391 4.80627 4.84508 4.90519 4.92539 4.98000 5.11843 5.25266 5.36078 5.44685 5.51738 5.56717 5.67908 5.81182 5.85124 5.86001 5.87090 6.06694 6.20395 6.26788 6.31933 6.76684 6.91156 7.13060 7.43348 7.60157 7.68881 8.26668 8.46458 8.83314 9.17328 10.65382 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.002893 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.576932 B = 9676.130019 C =10197.543869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.245 3.755 10 H 0.085 0.915 11 N -0.711 5.711 12 C 0.514 3.486 13 O -0.528 6.528 14 C -0.146 4.146 15 H 0.109 0.891 16 C 0.057 3.943 17 O -0.365 6.365 18 C 0.076 3.924 19 H 0.071 0.929 20 C -0.104 4.104 21 C -0.111 4.111 22 C 0.477 3.523 23 O -0.514 6.514 24 O -0.521 6.521 25 C -0.141 4.141 26 C 0.416 3.584 27 F -0.216 7.216 28 F -0.137 7.137 29 F -0.210 7.210 30 H 0.268 0.732 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.408 0.592 39 H 0.105 0.895 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -16.991 -1.441 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.095 0.905 9 C 0.140 3.860 10 H 0.102 0.898 11 N -0.360 5.360 12 C 0.298 3.702 13 O -0.404 6.404 14 C -0.168 4.168 15 H 0.127 0.873 16 C -0.020 4.020 17 O -0.284 6.284 18 C 0.019 3.981 19 H 0.089 0.911 20 C -0.142 4.142 21 C -0.149 4.149 22 C 0.320 3.680 23 O -0.402 6.402 24 O -0.333 6.333 25 C -0.179 4.179 26 C 0.360 3.640 27 F -0.198 7.198 28 F -0.118 7.118 29 F -0.192 7.192 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.267 0.733 39 H 0.124 0.876 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.516 -16.709 -1.125 17.969 hybrid contribution 0.267 0.686 -0.307 0.798 sum 6.782 -16.023 -1.432 17.458 Atomic orbital electron populations 1.70401 1.05871 1.27413 1.43491 1.25089 0.95152 1.00149 0.94029 0.86212 0.79517 0.81655 0.78444 1.20200 1.20794 1.19499 1.20867 0.93742 0.88120 1.56308 0.90464 1.19722 0.88722 0.85843 0.91734 0.89778 1.46044 1.17151 1.10585 1.62245 1.20203 0.88333 0.83625 0.77994 1.90679 1.21162 1.82557 1.46052 1.22699 0.99693 0.95602 0.98787 0.87288 1.23376 0.93681 0.90725 0.94202 1.89165 1.65870 1.39217 1.34108 1.23009 0.97432 0.92797 0.84899 0.91097 1.21532 0.98476 0.96105 0.98067 1.21375 0.93257 0.96570 1.03651 1.23674 0.88905 0.78251 0.77207 1.90750 1.43787 1.68045 1.37616 1.84546 1.47136 1.45540 1.56064 1.23013 1.04738 0.92391 0.97789 1.23118 0.80920 0.72862 0.87078 1.93084 1.81432 1.48317 1.96959 1.93403 1.68407 1.53839 1.96196 1.92984 1.74442 1.96191 1.55538 0.92079 0.76845 0.91232 0.88419 0.89590 0.89417 0.86806 0.87776 0.73314 0.87642 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.90 9.50 55.43 0.53 -22.38 16 2 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 3 Si 0.92 19.84 29.54 -169.99 -5.02 14.82 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.55 -13.85 8.46 -34.44 -0.29 -14.14 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 9 C 0.25 5.99 2.21 -69.08 -0.15 5.84 16 10 H 0.08 2.32 7.58 -51.93 -0.39 1.92 16 11 N -0.71 -13.89 4.80 -54.93 -0.26 -14.15 16 12 C 0.51 9.63 6.60 -10.99 -0.07 9.56 16 13 O -0.53 -12.08 13.85 5.56 0.08 -12.00 16 14 C -0.15 -1.90 3.51 -90.21 -0.32 -2.22 16 15 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.06 0.69 7.17 37.93 0.27 0.96 16 17 O -0.36 -4.93 11.00 -35.23 -0.39 -5.32 16 18 C 0.08 0.83 3.28 -25.95 -0.09 0.74 16 19 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 20 C -0.10 -1.14 4.14 -26.73 -0.11 -1.26 16 21 C -0.11 -1.00 5.73 -27.88 -0.16 -1.16 16 22 C 0.48 5.00 8.33 36.01 0.30 5.30 16 23 O -0.51 -7.23 16.74 -18.75 -0.31 -7.54 16 24 O -0.52 -4.16 13.42 -39.27 -0.53 -4.69 16 25 C -0.14 -1.72 6.22 -25.16 -0.16 -1.87 16 26 C 0.42 10.68 2.81 37.16 0.10 10.79 16 27 F -0.22 -5.57 15.68 2.25 0.04 -5.54 16 28 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 29 F -0.21 -5.14 16.94 2.25 0.04 -5.11 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 31 H 0.40 6.54 8.54 -40.82 -0.35 6.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.28 7.72 -51.93 -0.40 0.88 16 34 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.11 1.06 7.91 -51.93 -0.41 0.64 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.41 1.63 9.10 45.56 0.41 2.05 16 39 H 0.11 1.61 6.23 -51.93 -0.32 1.29 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -33.82 349.39 -5.26 -39.09 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.96 Total: 7.24 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -0.76 Total: 14.11 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.26 Total: -36.53 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.15 Total: -29.56 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 0.10 Total: -14.44 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.82 -5.26 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -282.387 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -316.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds