Wall clock time and date at job start Tue Mar 31 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99642 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.47157 * 30.00447 * 3 2 1 6 6 H 1.48500 * 109.46892 * 150.00021 * 3 2 1 7 7 C 1.37871 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00236 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46958 * 300.00725 * 9 7 2 11 11 N 1.46495 * 109.47433 * 179.97438 * 9 7 2 12 12 C 1.34779 * 119.99948 * 154.99636 * 11 9 7 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99948 * 180.02562 * 12 11 9 15 15 H 1.09000 * 110.45498 * 57.40236 * 14 12 11 16 16 C 1.54474 * 110.51188 * 294.64649 * 14 12 11 17 17 O 1.44427 * 104.80458 * 265.33449 * 16 14 12 18 18 C 1.44426 * 105.27356 * 319.48632 * 17 16 14 19 19 H 1.08996 * 110.37297 * 281.57053 * 18 17 16 20 20 C 1.53005 * 110.36818 * 159.34101 * 18 17 16 21 21 C 1.52998 * 109.46820 * 66.45887 * 20 18 17 22 22 C 1.50703 * 109.46917 * 179.97438 * 21 20 18 23 23 O 1.20827 * 119.99911 * 359.97438 * 22 21 20 24 24 O 1.34234 * 120.00104 * 180.02562 * 22 21 20 25 25 C 1.54475 * 104.80234 * 40.51337 * 18 17 16 26 26 C 1.53004 * 109.46756 * 60.00124 * 9 7 2 27 27 F 1.39901 * 109.47127 * 180.02562 * 26 9 7 28 28 F 1.39898 * 109.46956 * 300.00021 * 26 9 7 29 29 F 1.39897 * 109.47361 * 60.00249 * 26 9 7 30 30 H 0.97002 * 120.00745 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00274 * 335.00675 * 11 9 7 32 32 H 1.09006 * 110.37557 * 146.49972 * 16 14 12 33 33 H 1.09004 * 110.37781 * 24.16815 * 16 14 12 34 34 H 1.09005 * 109.46476 * 186.45378 * 20 18 17 35 35 H 1.08998 * 109.47515 * 306.45673 * 20 18 17 36 36 H 1.08996 * 109.47579 * 299.99492 * 21 20 18 37 37 H 1.08996 * 109.47696 * 59.99900 * 21 20 18 38 38 H 0.96694 * 117.00046 * 179.97438 * 24 22 21 39 39 H 1.09002 * 110.51057 * 94.66267 * 25 18 17 40 40 H 1.08996 * 110.51289 * 217.37234 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 2.2031 -3.6126 -0.0018 12 6 1.8374 -4.8124 0.4913 13 8 0.7200 -4.9704 0.9356 14 6 2.8169 -5.9577 0.4906 15 1 3.7200 -5.6869 1.0375 16 6 3.1613 -6.3744 -0.9564 17 8 2.2554 -7.4592 -1.2536 18 6 2.2036 -8.2528 -0.0480 19 1 3.0891 -8.8834 0.0295 20 6 0.9366 -9.1104 -0.0290 21 6 1.0098 -10.1529 -1.1465 22 6 -0.2378 -10.9981 -1.1274 23 8 -1.0970 -10.7884 -0.3042 24 8 -0.3940 -11.9845 -2.0243 25 6 2.1723 -7.2218 1.1020 26 6 0.3711 -2.5799 -1.2495 27 9 -0.3288 -3.7913 -1.2493 28 9 -0.5381 -1.5166 -1.2489 29 9 1.1749 -2.5055 -2.3921 30 1 -0.4851 0.8400 0.0004 31 1 3.0967 -3.4863 -0.3573 32 1 4.1948 -6.7156 -1.0173 33 1 2.9947 -5.5426 -1.6409 34 1 0.8539 -9.6149 0.9337 35 1 0.0648 -8.4743 -0.1821 36 1 1.0926 -9.6485 -2.1092 37 1 1.8815 -10.7891 -0.9935 38 1 -1.2106 -12.4998 -1.9724 39 1 1.1451 -7.0184 1.4047 40 1 2.7580 -7.5773 1.9497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:38 Heat of formation + Delta-G solvation = -347.064021 kcal Electronic energy + Delta-G solvation = -30932.452178 eV Core-core repulsion = 25910.509981 eV Total energy + Delta-G solvation = -5021.942197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.43971 -48.07691 -47.75198 -41.50640 -41.13386 -39.49428 -37.17147 -36.52355 -34.81106 -34.42679 -33.23022 -30.70828 -29.48760 -26.62115 -25.88395 -24.77881 -23.13829 -22.25738 -21.64571 -21.09967 -19.30485 -19.05690 -18.88955 -18.66406 -18.37409 -17.80618 -17.52137 -17.36803 -16.93688 -16.85404 -16.44296 -16.23583 -15.59446 -15.15659 -14.97659 -14.92554 -14.56020 -14.48374 -14.38319 -14.32148 -14.29151 -14.05457 -13.90795 -13.66835 -13.19477 -12.88827 -12.75397 -12.69291 -12.60592 -12.57063 -12.41392 -12.21165 -12.17386 -11.91527 -11.83329 -11.57679 -11.56355 -10.98719 -10.70603 -10.49216 -10.07084 -8.22141 -6.53674 1.22017 1.46377 1.47068 1.58725 1.65171 2.13853 2.21399 2.39522 2.52645 2.92281 2.95034 3.45211 3.65542 3.74579 3.81096 3.87332 3.99592 4.08888 4.12187 4.18839 4.32212 4.46782 4.50407 4.64931 4.68225 4.76258 4.78275 4.92736 4.95903 5.03714 5.14353 5.31287 5.43945 5.53994 5.63511 5.64197 5.92556 6.51769 6.72809 6.99742 7.16245 7.37819 8.70602 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.002893 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.576932 B = 9676.130019 C =10197.543869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.012 3.988 3 Si 0.985 3.015 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.253 3.747 10 H 0.043 0.957 11 N -0.704 5.704 12 C 0.504 3.496 13 O -0.579 6.579 14 C -0.137 4.137 15 H 0.151 0.849 16 C 0.058 3.942 17 O -0.393 6.393 18 C 0.080 3.920 19 H 0.118 0.882 20 C -0.104 4.104 21 C -0.105 4.105 22 C 0.480 3.520 23 O -0.560 6.560 24 O -0.513 6.513 25 C -0.145 4.145 26 C 0.412 3.588 27 F -0.221 7.221 28 F -0.152 7.152 29 F -0.202 7.202 30 H 0.268 0.732 31 H 0.415 0.585 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.425 0.575 39 H 0.063 0.937 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 -18.172 -1.756 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.114 0.886 9 C 0.145 3.855 10 H 0.061 0.939 11 N -0.355 5.355 12 C 0.292 3.708 13 O -0.458 6.458 14 C -0.158 4.158 15 H 0.169 0.831 16 C -0.019 4.019 17 O -0.313 6.313 18 C 0.024 3.976 19 H 0.135 0.865 20 C -0.142 4.142 21 C -0.142 4.142 22 C 0.325 3.675 23 O -0.451 6.451 24 O -0.327 6.327 25 C -0.183 4.183 26 C 0.355 3.645 27 F -0.203 7.203 28 F -0.134 7.134 29 F -0.184 7.184 30 H 0.078 0.922 31 H 0.252 0.748 32 H 0.136 0.864 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.287 0.713 39 H 0.082 0.918 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.308 -17.933 -1.469 20.737 hybrid contribution -0.977 0.966 -0.239 1.394 sum 9.331 -16.967 -1.707 19.439 Atomic orbital electron populations 1.70545 1.07638 1.28143 1.44759 1.26048 0.95872 1.03885 0.93466 0.85139 0.78662 0.76982 0.78427 1.20003 1.21027 1.17705 1.21249 0.94632 0.88206 1.55591 0.88613 1.19279 0.88972 0.87832 0.89392 0.93918 1.45912 1.17082 1.09922 1.62593 1.21378 0.88823 0.84393 0.76210 1.90666 1.23833 1.83361 1.47930 1.22815 0.99241 0.93023 1.00729 0.83148 1.23545 0.95772 0.90169 0.92432 1.89144 1.66817 1.39953 1.35353 1.23199 0.98708 0.92472 0.83264 0.86451 1.21479 0.97139 0.96182 0.99375 1.21392 0.93930 0.96320 1.02608 1.23990 0.88732 0.78234 0.76536 1.90742 1.45376 1.69411 1.39591 1.84507 1.48296 1.44967 1.54923 1.23074 1.02854 0.92664 0.99676 1.23395 0.80906 0.72257 0.87902 1.93071 1.81665 1.48562 1.97027 1.93372 1.69075 1.54596 1.96328 1.92981 1.74093 1.96140 1.55198 0.92237 0.74826 0.86358 0.90257 0.88860 0.94055 0.86927 0.83933 0.71322 0.91835 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.09 9.50 21.44 0.20 -48.88 16 2 C 0.01 0.64 5.20 84.65 0.44 1.08 16 3 Si 0.98 40.18 29.54 68.60 2.03 42.20 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.56 -27.93 8.46 25.60 0.22 -27.71 16 8 H 0.10 4.31 7.74 -2.91 -0.02 4.29 16 9 C 0.25 12.66 2.21 44.25 0.10 12.76 16 10 H 0.04 2.50 7.58 -2.39 -0.02 2.48 16 11 N -0.70 -27.45 4.80 -446.10 -2.14 -29.59 16 12 C 0.50 19.01 6.60 87.66 0.58 19.58 16 13 O -0.58 -27.82 13.85 -3.03 -0.04 -27.86 16 14 C -0.14 -3.23 3.51 -10.53 -0.04 -3.26 16 15 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 16 C 0.06 1.20 7.17 72.48 0.52 1.72 16 17 O -0.39 -9.84 11.00 -148.98 -1.64 -11.48 16 18 C 0.08 1.53 3.28 31.10 0.10 1.63 16 19 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.10 -2.23 4.14 30.60 0.13 -2.11 16 21 C -0.11 -1.71 5.73 29.85 0.17 -1.54 16 22 C 0.48 9.74 8.33 71.24 0.59 10.33 16 23 O -0.56 -16.15 16.74 21.96 0.37 -15.78 16 24 O -0.51 -7.39 13.42 -51.46 -0.69 -8.09 16 25 C -0.14 -3.25 6.22 31.61 0.20 -3.05 16 26 C 0.41 21.76 2.81 71.98 0.20 21.96 16 27 F -0.22 -11.92 15.68 44.97 0.70 -11.22 16 28 F -0.15 -8.81 12.91 44.97 0.58 -8.23 16 29 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.41 13.02 8.54 -92.71 -0.79 12.22 16 32 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.94 7.72 -2.38 -0.02 1.92 16 34 H 0.09 1.81 8.10 -2.38 -0.02 1.79 16 35 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.11 1.91 7.91 -2.39 -0.02 1.89 16 37 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.43 2.84 9.10 -74.06 -0.67 2.17 16 39 H 0.06 2.01 6.23 -2.39 -0.01 2.00 16 40 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -78.63 349.39 3.00 -75.63 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.34 Total: 21.13 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 3.21 Total: 31.40 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.94 Total: -78.48 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -2.00 Total: -63.20 kcal Atomic # 9 Polarization: -30.73 SS G_CDS: 2.05 Total: -28.68 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -78.63 3.00 -75.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.430 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -350.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -347.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds