Wall clock time and date at job start Tue Mar 31 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47478 * 273.67591 * 3 2 1 5 5 H 1.48508 * 109.46947 * 33.67661 * 3 2 1 6 6 H 1.48505 * 109.47033 * 153.67161 * 3 2 1 7 7 C 1.38952 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99796 * 359.36143 * 7 2 1 9 9 N 1.37099 * 120.00189 * 179.36087 * 7 2 1 10 10 C 1.46494 * 120.00084 * 311.34270 * 9 7 2 11 11 C 1.53005 * 109.47085 * 264.37228 * 10 9 7 12 12 C 1.50702 * 109.47042 * 180.02562 * 11 10 9 13 13 O 1.20816 * 120.00208 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99220 * 180.02562 * 12 11 10 15 15 C 1.34774 * 119.99886 * 131.33507 * 9 7 2 16 16 O 1.21293 * 120.00183 * 185.21829 * 15 9 7 17 17 C 1.50706 * 120.00187 * 5.21594 * 15 9 7 18 18 C 1.52994 * 109.61426 * 302.06406 * 17 15 9 19 19 F 1.39903 * 109.46902 * 199.08058 * 18 17 15 20 20 F 1.39895 * 109.47436 * 319.08401 * 18 17 15 21 21 F 1.39902 * 109.46942 * 79.08765 * 18 17 15 22 22 C 1.53182 * 109.53738 * 62.28813 * 17 15 9 23 23 C 1.53086 * 109.16935 * 62.88669 * 22 17 15 24 24 O 1.42907 * 109.42241 * 57.59654 * 23 22 17 25 25 C 1.42899 * 114.10312 * 298.86499 * 24 23 22 26 26 C 1.53094 * 109.42242 * 61.13735 * 25 24 23 27 27 H 0.96994 * 120.00431 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47634 * 24.36663 * 10 9 7 29 29 H 1.08999 * 109.47600 * 144.36894 * 10 9 7 30 30 H 1.09001 * 109.46650 * 299.99674 * 11 10 9 31 31 H 1.08999 * 109.47174 * 59.99406 * 11 10 9 32 32 H 0.96706 * 116.99520 * 179.97438 * 14 12 11 33 33 H 1.08996 * 109.52134 * 302.97788 * 22 17 15 34 34 H 1.09001 * 109.56826 * 182.82788 * 22 17 15 35 35 H 1.08991 * 109.48371 * 177.58846 * 23 22 17 36 36 H 1.09005 * 109.47889 * 297.61611 * 23 22 17 37 37 H 1.09001 * 109.47025 * 301.15962 * 25 24 23 38 38 H 1.09002 * 109.49121 * 181.13361 * 25 24 23 39 39 H 1.09003 * 109.51852 * 182.49750 * 26 25 24 40 40 H 1.08999 * 109.52158 * 62.30306 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4179 2.0913 -1.3972 5 1 1.4865 2.6290 0.7764 6 1 3.5823 1.4189 0.6210 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 0.0095 9 7 3.3798 -1.2034 -0.0138 10 6 4.1030 -0.3703 -0.9776 11 6 4.4687 -1.2094 -2.2037 12 6 5.2133 -0.3525 -3.1949 13 8 5.4289 0.8100 -2.9464 14 8 5.6360 -0.8807 -4.3542 15 6 4.0621 -1.9698 0.8600 16 8 5.2718 -1.8992 0.9127 17 6 3.3220 -2.9144 1.7717 18 6 2.3176 -2.1300 2.6181 19 9 1.9540 -2.8908 3.7345 20 9 2.9003 -0.9305 3.0409 21 9 1.1799 -1.8516 1.8530 22 6 2.5797 -3.9595 0.9330 23 6 3.5985 -4.7912 0.1495 24 8 4.5147 -5.4018 1.0605 25 6 5.2712 -4.4720 1.8384 26 6 4.3195 -3.6275 2.6897 27 1 -0.4850 0.8400 0.0004 28 1 3.4711 0.4636 -1.2834 29 1 5.0126 0.0136 -0.5156 30 1 5.1007 -2.0431 -1.8979 31 1 3.5591 -1.5932 -2.6656 32 1 6.1088 -0.2919 -4.9583 33 1 1.9073 -3.4576 0.2374 34 1 2.0040 -4.6123 1.5892 35 1 3.0787 -5.5643 -0.4161 36 1 4.1452 -4.1442 -0.5367 37 1 5.8398 -3.8208 1.1745 38 1 5.9564 -5.0150 2.4893 39 1 4.8913 -2.8880 3.2504 40 1 3.7798 -4.2735 3.3821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:16 Heat of formation + Delta-G solvation = -302.919173 kcal Electronic energy + Delta-G solvation = -33723.093007 eV Core-core repulsion = 28703.065074 eV Total energy + Delta-G solvation = -5020.027933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.92901 -48.45769 -48.26407 -41.92776 -41.23999 -39.34877 -37.37945 -37.00108 -35.36915 -34.20920 -32.58259 -31.91378 -28.49066 -27.03071 -26.52477 -24.68740 -24.29174 -22.86651 -22.07953 -20.58470 -19.53465 -19.35537 -19.16540 -19.02124 -18.52080 -18.03844 -17.59755 -17.04679 -16.92278 -16.73602 -16.40847 -16.04400 -15.64201 -15.52111 -15.24525 -15.02229 -14.89559 -14.81977 -14.75421 -14.51705 -14.40032 -14.33557 -14.12239 -13.93571 -13.57624 -13.30959 -13.20588 -13.15464 -12.79581 -12.63128 -12.59289 -12.26599 -12.01699 -11.75870 -11.71748 -11.68801 -11.37221 -11.02609 -10.65670 -10.32741 -9.70946 -8.43727 -6.17419 1.11760 1.13661 1.24252 1.33247 1.40647 1.87551 2.08353 2.13774 2.45960 2.87228 2.95022 3.02977 3.15104 3.20761 3.72535 3.76395 3.78345 3.88898 3.97178 4.04372 4.27913 4.30454 4.40033 4.51161 4.52978 4.61999 4.68870 4.77883 4.80234 4.81132 4.98711 5.02897 5.13187 5.44191 5.53178 6.06384 6.18927 6.26177 6.88809 6.93336 7.21819 7.55177 8.64129 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.007259 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.439517 B = 3856.458757 C = 5394.011497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.344 4.344 8 H 0.136 0.864 9 N -0.467 5.467 10 C 0.112 3.888 11 C -0.118 4.118 12 C 0.494 3.506 13 O -0.555 6.555 14 O -0.503 6.503 15 C 0.502 3.498 16 O -0.580 6.580 17 C -0.102 4.102 18 C 0.456 3.544 19 F -0.188 7.188 20 F -0.202 7.202 21 F -0.137 7.137 22 C -0.154 4.154 23 C 0.069 3.931 24 O -0.388 6.388 25 C 0.060 3.940 26 C -0.132 4.132 27 H 0.276 0.724 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.428 0.572 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -8.725 -1.960 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.152 4.152 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.153 0.847 9 N -0.187 5.187 10 C -0.011 4.011 11 C -0.156 4.156 12 C 0.338 3.662 13 O -0.447 6.447 14 O -0.317 6.317 15 C 0.290 3.710 16 O -0.464 6.464 17 C -0.106 4.106 18 C 0.402 3.598 19 F -0.170 7.170 20 F -0.183 7.183 21 F -0.118 7.118 22 C -0.191 4.191 23 C -0.007 4.007 24 O -0.307 6.307 25 C -0.017 4.017 26 C -0.170 4.170 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.290 0.710 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.246 -8.677 -1.602 10.810 hybrid contribution 0.093 2.581 -0.153 2.587 sum 6.339 -6.096 -1.755 8.967 Atomic orbital electron populations 1.69616 1.06341 1.28294 1.47302 1.25571 0.95350 0.99183 0.95124 0.86650 0.79506 0.83022 0.78317 1.19635 1.22276 1.19830 1.19905 0.78328 0.96219 1.52623 0.84749 1.43835 1.06587 1.39976 1.28326 1.21426 0.96684 0.93355 0.89645 1.21611 1.02366 0.98935 0.92684 1.23360 0.75305 0.86160 0.81377 1.90714 1.55784 1.20328 1.77839 1.84497 1.69653 1.48358 1.29181 1.19968 0.87069 0.83044 0.80912 1.90533 1.14403 1.70053 1.71400 1.21898 0.95933 0.96266 0.96543 1.20371 0.83276 0.77630 0.78560 1.93109 1.92690 1.75692 1.55490 1.93104 1.84657 1.49584 1.90994 1.93566 1.52664 1.93315 1.72243 1.22614 0.99499 0.96243 1.00753 1.22611 0.89796 0.97519 0.90817 1.87865 1.54852 1.33580 1.54359 1.22793 0.92744 0.91832 0.94302 1.22152 0.97234 0.99858 0.97742 0.91383 0.92380 0.91985 0.86280 0.85208 0.70971 0.87418 0.88457 0.85418 0.93873 0.91823 0.86322 0.90398 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.57 13.76 21.66 0.30 -45.27 16 2 C 0.05 2.67 4.78 84.93 0.41 3.08 16 3 Si 0.90 42.79 24.65 68.60 1.69 44.48 16 4 H -0.27 -12.67 6.99 99.48 0.70 -11.97 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -13.56 6.46 99.48 0.64 -12.92 16 7 C -0.34 -15.56 5.82 84.04 0.49 -15.07 16 8 H 0.14 6.04 3.77 -2.91 -0.01 6.03 16 9 N -0.47 -19.76 2.14 -635.54 -1.36 -21.12 16 10 C 0.11 4.59 2.77 86.38 0.24 4.83 16 11 C -0.12 -3.73 6.09 29.85 0.18 -3.55 16 12 C 0.49 15.03 8.33 71.24 0.59 15.62 16 13 O -0.56 -20.97 16.74 21.99 0.37 -20.60 16 14 O -0.50 -10.86 13.42 -51.43 -0.69 -11.55 16 15 C 0.50 20.23 4.41 87.66 0.39 20.62 16 16 O -0.58 -24.67 13.42 -3.07 -0.04 -24.71 16 17 C -0.10 -3.58 0.33 -52.81 -0.02 -3.60 16 18 C 0.46 17.94 2.19 71.98 0.16 18.10 16 19 F -0.19 -6.60 16.05 44.97 0.72 -5.88 16 20 F -0.20 -8.87 16.51 44.97 0.74 -8.13 16 21 F -0.14 -6.05 11.00 44.97 0.49 -5.56 16 22 C -0.15 -4.63 4.40 30.68 0.13 -4.50 16 23 C 0.07 1.83 6.62 72.01 0.48 2.31 16 24 O -0.39 -10.81 10.77 -148.98 -1.60 -12.42 16 25 C 0.06 1.65 6.55 72.01 0.47 2.13 16 26 C -0.13 -3.97 4.27 30.68 0.13 -3.84 16 27 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 28 H 0.06 2.59 3.49 -2.39 -0.01 2.58 16 29 H 0.06 2.75 7.45 -2.39 -0.02 2.73 16 30 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.43 5.20 9.10 -74.05 -0.67 4.52 16 33 H 0.11 3.57 4.54 -2.39 -0.01 3.56 16 34 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.04 1.23 7.38 -2.38 -0.02 1.21 16 37 H 0.06 2.04 5.74 -2.39 -0.01 2.03 16 38 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 2.44 8.05 -2.39 -0.02 2.42 16 40 H 0.10 2.68 7.36 -2.39 -0.02 2.66 16 Total: -1.00 -61.93 321.49 4.66 -57.27 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.39 Total: 17.35 kcal Atomic # 6 Polarization: 32.48 SS G_CDS: 3.65 Total: 36.13 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.06 Total: -66.39 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -1.97 Total: -69.28 kcal Atomic # 9 Polarization: -21.53 SS G_CDS: 1.96 Total: -19.57 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.69 Total: 44.48 kcal Total: -61.93 4.66 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.644 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -307.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds