Wall clock time and date at job start Tue Mar 31 2020 22:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33643 * 125.67445 * 2 1 4 4 C 1.34567 * 110.87636 * 180.02562 * 3 2 1 5 5 C 1.47933 * 125.58118 * 180.02562 * 4 3 2 6 6 N 1.34197 * 126.69833 * 180.02562 * 5 4 3 7 7 N 1.28987 * 107.24938 * 180.02562 * 6 5 4 8 8 N 1.28723 * 108.99378 * 359.97438 * 7 6 5 9 9 H 0.96996 * 125.31797 * 179.97438 * 8 7 6 10 10 N 1.28879 * 109.35918 * 359.73555 * 8 7 6 11 11 C 1.35562 * 108.83786 * 359.75158 * 4 3 2 12 12 C 1.36582 * 125.67044 * 180.02562 * 2 1 3 13 13 C 1.47401 * 127.11706 * 359.94800 * 12 2 1 14 14 O 1.21623 * 119.99746 * 359.97438 * 13 12 2 15 15 N 1.34772 * 120.00241 * 179.97438 * 13 12 2 16 16 C 1.39874 * 119.99972 * 185.09431 * 15 13 12 17 17 C 1.39306 * 119.95145 * 33.31694 * 16 15 13 18 18 C 1.38479 * 120.43011 * 180.27873 * 17 16 15 19 19 C 1.37690 * 120.32062 * 359.44572 * 18 17 16 20 20 C 1.40733 * 119.88844 * 0.27518 * 19 18 17 21 21 C 1.41416 * 120.20895 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00157 * 29.19974 * 21 20 19 23 23 C 1.39940 * 119.99682 * 209.20110 * 21 20 19 24 24 N 1.30821 * 120.00108 * 15.61884 * 23 21 20 25 25 Si 1.86800 * 119.99594 * 195.61780 * 23 21 20 26 26 H 1.48501 * 109.47074 * 94.97424 * 25 23 21 27 27 H 1.48499 * 109.47125 * 214.97593 * 25 23 21 28 28 H 1.48503 * 109.46924 * 334.97398 * 25 23 21 29 29 C 1.38259 * 119.94975 * 213.04467 * 16 15 13 30 30 H 1.08991 * 109.47732 * 269.97473 * 1 2 3 31 31 H 1.08998 * 109.47086 * 29.98150 * 1 2 3 32 32 H 1.09002 * 109.46820 * 149.97601 * 1 2 3 33 33 H 1.08000 * 127.06761 * 180.26770 * 11 4 3 34 34 H 0.96998 * 120.00252 * 5.09620 * 15 13 12 35 35 H 1.08007 * 119.78697 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.84144 * 179.71980 * 18 17 16 37 37 H 1.08000 * 120.05167 * 180.25407 * 19 18 17 38 38 H 0.96998 * 119.99907 * 180.02562 * 24 23 21 39 39 H 1.07996 * 120.15940 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2864 1.0856 0.0000 4 6 3.5874 0.7419 -0.0006 5 6 4.7269 1.6853 -0.0002 6 7 6.0308 1.3679 -0.0012 7 7 6.6938 2.4744 0.0001 8 7 5.8651 3.4593 0.0014 9 1 6.1097 4.3979 0.0029 10 7 4.6596 3.0034 -0.0047 11 6 3.6829 -0.6103 0.0046 12 6 2.3034 -1.1096 -0.0005 13 6 1.8672 -2.5176 -0.0001 14 8 0.6812 -2.7867 0.0013 15 7 2.7827 -3.5067 -0.0012 16 6 2.3721 -4.8395 -0.1083 17 6 1.2483 -5.1623 -0.8657 18 6 0.8297 -6.4779 -0.9738 19 6 1.5270 -7.4834 -0.3425 20 6 2.6676 -7.1731 0.4213 21 6 3.3886 -8.2004 1.0730 22 1 3.4024 -9.1973 0.6579 23 6 4.0842 -7.9251 2.2557 24 7 3.8318 -6.8285 2.9228 25 14 5.3729 -9.1237 2.8818 26 1 6.7152 -8.6981 2.4105 27 1 5.3522 -9.1418 4.3665 28 1 5.0755 -10.4842 2.3660 29 6 3.0855 -5.8352 0.5330 30 1 -0.3634 -0.0005 1.0275 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.5884 -1.1989 0.0096 34 1 3.7263 -3.2943 0.0724 35 1 0.6976 -4.3810 -1.3685 36 1 -0.0455 -6.7169 -1.5597 37 1 1.1990 -8.5084 -0.4331 38 1 4.3142 -6.6375 3.7423 39 1 3.9591 -5.5865 1.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606169608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:13 Heat of formation + Delta-G solvation = 127.569535 kcal Electronic energy + Delta-G solvation = -27332.464341 eV Core-core repulsion = 23244.854962 eV Total energy + Delta-G solvation = -4087.609379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.87287 -42.80702 -39.47689 -37.15321 -34.94325 -34.32379 -33.93859 -33.41934 -33.01076 -31.70240 -29.54347 -28.68903 -27.42418 -25.22238 -25.04617 -24.18868 -23.24679 -21.72941 -21.23988 -20.17443 -19.64347 -19.34585 -17.94450 -17.64064 -17.33901 -16.54707 -16.04625 -15.58412 -15.24559 -14.76739 -14.74227 -14.48011 -14.25759 -13.66900 -13.30853 -13.23587 -13.12523 -12.97633 -12.75642 -12.67785 -12.32289 -11.97738 -11.83823 -11.72816 -11.55025 -11.50794 -11.23836 -11.07400 -10.75243 -10.46038 -10.02293 -9.92337 -9.88160 -9.45309 -9.22800 -8.91419 -8.63023 -7.33436 -6.93504 -6.68147 -4.34747 0.46849 0.89919 1.41044 1.67738 2.15668 2.34601 2.77904 2.91820 3.10835 3.14418 3.24035 3.35901 3.63742 3.73633 3.97626 3.98746 4.43791 4.67646 4.68608 4.77012 4.94636 5.14187 5.29519 5.41711 5.49504 5.58067 5.68967 5.91556 5.95890 6.05234 6.28079 6.64342 6.70165 6.70463 6.90818 7.07020 7.09011 7.26573 7.61576 7.70304 7.70878 7.93406 8.03962 8.16465 8.33880 8.56645 8.75925 8.91880 8.97572 10.26119 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.002760 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.847398 B =10142.623295 C =11987.156848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.104 3.896 3 O -0.159 6.159 4 C 0.041 3.959 5 C 0.258 3.742 6 N -0.250 5.250 7 N -0.041 5.041 8 N -0.224 5.224 9 H 0.478 0.522 10 N -0.284 5.284 11 C -0.101 4.101 12 C -0.236 4.236 13 C 0.584 3.416 14 O -0.523 6.523 15 N -0.653 5.653 16 C 0.145 3.855 17 C -0.224 4.224 18 C -0.088 4.088 19 C -0.224 4.224 20 C 0.122 3.878 21 C -0.468 4.468 22 H 0.078 0.922 23 C 0.077 3.923 24 N -0.799 5.799 25 Si 0.907 3.093 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.263 1.263 29 C -0.177 4.177 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.172 0.828 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.279 0.721 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 20.135 -4.088 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 O -0.054 6.054 4 C -0.010 4.010 5 C -0.021 4.021 6 N -0.124 5.124 7 N -0.036 5.036 8 N -0.071 5.071 9 H 0.333 0.667 10 N -0.136 5.136 11 C -0.123 4.123 12 C -0.241 4.241 13 C 0.372 3.628 14 O -0.400 6.400 15 N -0.296 5.296 16 C 0.054 3.946 17 C -0.245 4.245 18 C -0.106 4.106 19 C -0.244 4.244 20 C 0.120 3.880 21 C -0.498 4.498 22 H 0.096 0.904 23 C -0.140 4.140 24 N -0.425 5.425 25 Si 0.731 3.269 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.187 1.187 29 C -0.198 4.198 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.190 0.810 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.408 20.569 -3.880 21.070 hybrid contribution 1.007 0.135 0.593 1.176 sum 3.415 20.704 -3.287 21.240 Atomic orbital electron populations 1.20737 0.82781 1.05503 1.04967 1.23019 0.94096 0.82268 0.95666 1.83730 1.14990 1.34956 1.71773 1.17393 0.79706 0.89761 1.14178 1.21854 0.90740 0.86733 1.02765 1.76209 1.01179 1.17448 1.17572 1.78981 1.19914 0.90213 1.14505 1.47709 1.00923 1.12651 1.45789 0.66733 1.75159 1.05119 1.11711 1.21604 1.22991 0.97700 0.91950 0.99702 1.21260 0.92305 0.94689 1.15837 1.17025 0.85863 0.83060 0.76890 1.90769 1.16173 1.83522 1.49582 1.43216 1.09569 1.05335 1.71448 1.17575 0.97494 0.81087 0.98475 1.20325 1.01050 0.95897 1.07185 1.20433 0.98216 0.92815 0.99176 1.21076 0.98527 0.97317 1.07465 1.17355 0.89500 0.91935 0.89253 1.19509 1.26822 0.97025 1.06480 0.90358 1.25856 0.96196 0.95780 0.96197 1.69822 1.34918 1.24309 1.13453 0.86328 0.81082 0.81371 0.78077 1.19448 1.20424 1.18661 1.20983 1.02769 0.92441 1.03631 0.88746 0.90183 0.86510 0.81025 0.76417 0.87861 0.88975 0.88817 0.91055 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.88 36.00 0.36 -0.52 16 2 C 0.10 1.35 7.37 -34.91 -0.26 1.09 16 3 O -0.16 -2.03 10.54 6.72 0.07 -1.96 16 4 C 0.04 0.52 7.22 -36.57 -0.26 0.25 16 5 C 0.26 3.08 8.20 -156.25 -1.28 1.80 16 6 N -0.25 -2.99 12.52 32.08 0.40 -2.59 16 7 N -0.04 -0.39 13.46 60.35 0.81 0.42 16 8 N -0.22 -1.54 7.90 60.35 0.48 -1.06 16 9 H 0.48 0.78 8.96 -340.33 -3.05 -2.27 16 10 N -0.28 -2.86 12.41 32.10 0.40 -2.46 16 11 C -0.10 -1.29 10.51 -37.12 -0.39 -1.68 16 12 C -0.24 -3.47 6.30 -103.35 -0.65 -4.12 16 13 C 0.58 10.69 7.55 -12.53 -0.09 10.59 16 14 O -0.52 -10.84 12.49 5.26 0.07 -10.78 16 15 N -0.65 -12.47 5.33 -10.88 -0.06 -12.53 16 16 C 0.15 3.37 6.27 -83.78 -0.53 2.85 16 17 C -0.22 -5.23 8.66 -39.10 -0.34 -5.57 16 18 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 19 C -0.22 -5.53 9.79 -38.84 -0.38 -5.91 16 20 C 0.12 3.24 5.52 -106.85 -0.59 2.65 16 21 C -0.47 -12.32 9.04 -37.74 -0.34 -12.66 16 22 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 23 C 0.08 1.91 5.15 -17.35 -0.09 1.83 16 24 N -0.80 -20.66 11.15 55.55 0.62 -20.04 16 25 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 29 C -0.18 -4.48 8.57 -38.68 -0.33 -4.81 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.12 1.41 6.47 -51.93 -0.34 1.07 16 33 H 0.17 1.89 7.74 -52.49 -0.41 1.48 16 34 H 0.40 6.47 7.99 -40.82 -0.33 6.14 16 35 H 0.10 2.35 6.39 -52.48 -0.34 2.01 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 39 H 0.12 3.03 6.44 -52.49 -0.34 2.69 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -32.57 349.30 -8.59 -41.16 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.03 Total: 7.56 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -5.58 Total: -16.62 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 2.65 Total: -38.26 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.14 Total: -12.73 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.57 -8.59 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606169608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.726 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds