Wall clock time and date at job start Tue Mar 31 2020 22:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33643 * 125.67445 * 2 1 4 4 C 1.34567 * 110.87636 * 180.02562 * 3 2 1 5 5 C 1.47933 * 125.58118 * 180.02562 * 4 3 2 6 6 N 1.34197 * 126.69833 * 180.02562 * 5 4 3 7 7 N 1.28987 * 107.24938 * 180.02562 * 6 5 4 8 8 N 1.28723 * 108.99378 * 359.97438 * 7 6 5 9 9 H 0.96996 * 125.31797 * 179.97438 * 8 7 6 10 10 N 1.28879 * 109.35918 * 359.73555 * 8 7 6 11 11 C 1.35562 * 108.83786 * 359.75158 * 4 3 2 12 12 C 1.36582 * 125.67044 * 180.02562 * 2 1 3 13 13 C 1.47401 * 127.11706 * 359.94800 * 12 2 1 14 14 O 1.21623 * 119.99746 * 359.97438 * 13 12 2 15 15 N 1.34772 * 120.00241 * 179.97438 * 13 12 2 16 16 C 1.39874 * 119.99972 * 185.09431 * 15 13 12 17 17 C 1.39306 * 119.95145 * 33.31694 * 16 15 13 18 18 C 1.38479 * 120.43011 * 180.27873 * 17 16 15 19 19 C 1.37690 * 120.32062 * 359.44572 * 18 17 16 20 20 C 1.40733 * 119.88844 * 0.27518 * 19 18 17 21 21 C 1.41416 * 120.20895 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00157 * 29.19974 * 21 20 19 23 23 C 1.39940 * 119.99682 * 209.20110 * 21 20 19 24 24 N 1.30821 * 120.00108 * 15.61884 * 23 21 20 25 25 Si 1.86800 * 119.99594 * 195.61780 * 23 21 20 26 26 H 1.48501 * 109.47074 * 94.97424 * 25 23 21 27 27 H 1.48499 * 109.47125 * 214.97593 * 25 23 21 28 28 H 1.48503 * 109.46924 * 334.97398 * 25 23 21 29 29 C 1.38259 * 119.94975 * 213.04467 * 16 15 13 30 30 H 1.08991 * 109.47732 * 269.97473 * 1 2 3 31 31 H 1.08998 * 109.47086 * 29.98150 * 1 2 3 32 32 H 1.09002 * 109.46820 * 149.97601 * 1 2 3 33 33 H 1.08000 * 127.06761 * 180.26770 * 11 4 3 34 34 H 0.96998 * 120.00252 * 5.09620 * 15 13 12 35 35 H 1.08007 * 119.78697 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.84144 * 179.71980 * 18 17 16 37 37 H 1.08000 * 120.05167 * 180.25407 * 19 18 17 38 38 H 0.96998 * 119.99907 * 180.02562 * 24 23 21 39 39 H 1.07996 * 120.15940 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2864 1.0856 0.0000 4 6 3.5874 0.7419 -0.0006 5 6 4.7269 1.6853 -0.0002 6 7 6.0308 1.3679 -0.0012 7 7 6.6938 2.4744 0.0001 8 7 5.8651 3.4593 0.0014 9 1 6.1097 4.3979 0.0029 10 7 4.6596 3.0034 -0.0047 11 6 3.6829 -0.6103 0.0046 12 6 2.3034 -1.1096 -0.0005 13 6 1.8672 -2.5176 -0.0001 14 8 0.6812 -2.7867 0.0013 15 7 2.7827 -3.5067 -0.0012 16 6 2.3721 -4.8395 -0.1083 17 6 1.2483 -5.1623 -0.8657 18 6 0.8297 -6.4779 -0.9738 19 6 1.5270 -7.4834 -0.3425 20 6 2.6676 -7.1731 0.4213 21 6 3.3886 -8.2004 1.0730 22 1 3.4024 -9.1973 0.6579 23 6 4.0842 -7.9251 2.2557 24 7 3.8318 -6.8285 2.9228 25 14 5.3729 -9.1237 2.8818 26 1 6.7152 -8.6981 2.4105 27 1 5.3522 -9.1418 4.3665 28 1 5.0755 -10.4842 2.3660 29 6 3.0855 -5.8352 0.5330 30 1 -0.3634 -0.0005 1.0275 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 4.5884 -1.1989 0.0096 34 1 3.7263 -3.2943 0.0724 35 1 0.6976 -4.3810 -1.3685 36 1 -0.0455 -6.7169 -1.5597 37 1 1.1990 -8.5084 -0.4331 38 1 4.3142 -6.6375 3.7423 39 1 3.9591 -5.5865 1.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606169608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:12 Heat of formation + Delta-G solvation = 106.379141 kcal Electronic energy + Delta-G solvation = -27333.383226 eV Core-core repulsion = 23244.854962 eV Total energy + Delta-G solvation = -4088.528264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.65080 -43.83954 -41.05320 -38.92759 -36.03074 -35.72074 -35.11088 -34.78440 -34.23473 -32.62398 -31.45056 -30.34775 -28.47290 -27.14015 -25.88077 -25.26145 -24.32773 -23.11237 -22.91831 -21.61857 -20.87961 -20.34541 -19.20588 -19.00119 -18.43931 -17.64850 -17.51435 -17.05851 -16.66049 -16.52144 -16.11189 -15.87937 -15.32256 -15.03906 -14.84030 -14.54096 -14.25307 -14.18498 -14.07364 -13.90724 -13.59325 -13.51830 -12.98417 -12.88639 -12.77953 -12.62258 -12.58728 -12.36444 -12.32429 -12.18832 -11.82100 -11.68939 -11.19110 -11.03103 -10.93840 -10.67477 -9.62658 -9.26752 -8.75779 -8.54723 -6.33264 -0.37554 0.04165 0.25110 0.89291 0.98369 1.08462 1.41920 1.42231 1.42456 1.54664 1.55545 2.16919 2.24862 2.26907 2.53914 2.81176 3.11987 3.49440 3.55828 3.68761 3.75231 4.06149 4.19471 4.38525 4.47967 4.52241 4.62405 4.66050 4.76336 4.87931 4.95587 5.11560 5.17617 5.19287 5.24612 5.37431 5.48238 5.70015 5.81102 5.88558 6.05625 6.11212 6.36714 6.57919 6.74678 6.91552 6.97852 7.00527 7.23164 8.40178 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.002760 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.847398 B =10142.623295 C =11987.156848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.120 3.880 3 O -0.155 6.155 4 C 0.041 3.959 5 C 0.243 3.757 6 N -0.273 5.273 7 N -0.042 5.042 8 N -0.190 5.190 9 H 0.499 0.501 10 N -0.283 5.283 11 C -0.100 4.100 12 C -0.261 4.261 13 C 0.586 3.414 14 O -0.550 6.550 15 N -0.653 5.653 16 C 0.151 3.849 17 C -0.232 4.232 18 C -0.085 4.085 19 C -0.243 4.243 20 C 0.093 3.907 21 C -0.501 4.501 22 H 0.077 0.923 23 C 0.037 3.963 24 N -0.830 5.830 25 Si 0.981 3.019 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.259 1.259 29 C -0.197 4.197 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.184 0.816 34 H 0.414 0.586 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.286 0.714 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 21.881 -4.061 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.065 3.935 3 O -0.050 6.050 4 C -0.010 4.010 5 C -0.036 4.036 6 N -0.147 5.147 7 N -0.037 5.037 8 N -0.042 5.042 9 H 0.359 0.641 10 N -0.137 5.137 11 C -0.123 4.123 12 C -0.266 4.266 13 C 0.376 3.624 14 O -0.430 6.430 15 N -0.296 5.296 16 C 0.058 3.942 17 C -0.253 4.253 18 C -0.104 4.104 19 C -0.262 4.262 20 C 0.091 3.909 21 C -0.531 4.531 22 H 0.095 0.905 23 C -0.177 4.177 24 N -0.456 5.456 25 Si 0.802 3.198 26 H -0.186 1.186 27 H -0.196 1.196 28 H -0.183 1.183 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.202 0.798 34 H 0.251 0.749 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.991 22.365 -3.865 22.892 hybrid contribution 0.785 -0.188 0.547 0.975 sum 3.776 22.176 -3.318 22.739 Atomic orbital electron populations 1.20846 0.81044 1.06224 1.05871 1.23417 0.94981 0.81769 0.93331 1.83756 1.15101 1.34611 1.71541 1.17513 0.79859 0.89924 1.13724 1.21766 0.90544 0.87213 1.04080 1.76204 1.01323 1.18569 1.18559 1.78931 1.19863 0.90285 1.14652 1.47771 0.99780 1.13470 1.43206 0.64094 1.75114 1.06215 1.11006 1.21333 1.23074 0.97336 0.92262 0.99594 1.20931 0.93773 0.93007 1.18874 1.17425 0.85270 0.84105 0.75592 1.90743 1.17246 1.84237 1.50771 1.43183 1.10632 1.04131 1.71696 1.17634 0.96855 0.82535 0.97141 1.20544 1.01196 0.96309 1.07265 1.20766 0.98707 0.92346 0.98562 1.21257 0.98653 0.98255 1.08077 1.17756 0.90400 0.92730 0.90059 1.19760 1.28534 0.97145 1.07625 0.90463 1.26692 0.97616 0.97596 0.95829 1.69882 1.35799 1.25965 1.13981 0.85205 0.78130 0.78847 0.77579 1.18609 1.19645 1.18307 1.20916 1.03256 0.92850 1.04824 0.87583 0.87050 0.88112 0.79840 0.74947 0.87188 0.85940 0.87997 0.90372 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.88 71.24 0.70 -0.91 16 2 C 0.12 2.95 7.37 25.30 0.19 3.14 16 3 O -0.16 -3.68 10.54 1.12 0.01 -3.67 16 4 C 0.04 0.98 7.22 24.22 0.17 1.16 16 5 C 0.24 5.44 8.20 137.12 1.12 6.57 16 6 N -0.27 -6.19 12.52 -52.41 -0.66 -6.84 16 7 N -0.04 -0.74 13.46 37.02 0.50 -0.24 16 8 N -0.19 -2.15 7.90 37.02 0.29 -1.86 16 9 H 0.50 0.21 8.96 -347.51 -3.11 -2.90 16 10 N -0.28 -5.10 12.41 -52.36 -0.65 -5.75 16 11 C -0.10 -2.50 10.51 23.86 0.25 -2.24 16 12 C -0.26 -7.54 6.30 -19.04 -0.12 -7.66 16 13 C 0.59 21.52 7.55 86.66 0.65 22.17 16 14 O -0.55 -22.93 12.49 -4.10 -0.05 -22.98 16 15 N -0.65 -25.27 5.33 -306.60 -1.63 -26.90 16 16 C 0.15 7.16 6.27 38.12 0.24 7.40 16 17 C -0.23 -10.90 8.66 22.58 0.20 -10.70 16 18 C -0.09 -3.92 10.02 22.20 0.22 -3.70 16 19 C -0.24 -12.18 9.79 22.75 0.22 -11.96 16 20 C 0.09 5.09 5.52 -21.31 -0.12 4.97 16 21 C -0.50 -27.04 9.04 23.47 0.21 -26.83 16 22 H 0.08 4.02 7.89 -2.91 -0.02 4.00 16 23 C 0.04 1.86 5.15 85.26 0.44 2.30 16 24 N -0.83 -43.70 11.15 21.82 0.24 -43.45 16 25 Si 0.98 38.37 29.59 68.60 2.03 40.40 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 28 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 29 C -0.20 -10.28 8.57 22.85 0.20 -10.09 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.35 6.47 -2.39 -0.02 2.34 16 33 H 0.18 3.97 7.74 -2.91 -0.02 3.95 16 34 H 0.41 13.57 7.99 -92.71 -0.74 12.83 16 35 H 0.11 4.99 6.39 -2.91 -0.02 4.97 16 36 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 39 H 0.11 5.71 6.44 -2.91 -0.02 5.70 16 Total: -1.00 -70.96 349.30 1.98 -68.98 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -2.69 Total: 28.71 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.58 Total: -26.39 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.91 Total: -85.04 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.66 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -70.96 1.98 -68.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606169608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.358 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds