Wall clock time and date at job start Tue Mar 31 2020 22:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40037 * 126.53980 * 2 1 4 4 C 1.36635 * 106.92612 * 180.02562 * 3 2 1 5 5 C 1.47178 * 125.80255 * 179.97438 * 4 3 2 6 6 O 1.21525 * 120.00451 * 359.97438 * 5 4 3 7 7 O 1.34822 * 119.99982 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99874 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47306 * 29.99909 * 8 7 5 10 10 C 1.52997 * 109.47156 * 269.99553 * 8 7 5 11 11 C 1.50705 * 109.46993 * 149.99738 * 8 7 5 12 12 O 1.21288 * 119.99736 * 14.97312 * 11 8 7 13 13 N 1.34775 * 120.00071 * 194.97460 * 11 8 7 14 14 C 1.46497 * 119.99963 * 4.86988 * 13 11 8 15 15 C 1.46501 * 119.99706 * 184.87809 * 13 11 8 16 16 C 1.50702 * 109.47099 * 90.00044 * 15 13 11 17 17 H 1.08001 * 120.00233 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99731 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46733 * 89.99753 * 20 18 16 22 22 H 1.48494 * 109.47397 * 209.99299 * 20 18 16 23 23 H 1.48497 * 109.46929 * 330.00040 * 20 18 16 24 24 O 1.34552 * 108.39135 * 0.24484 * 4 3 2 25 25 C 1.34557 * 109.36978 * 359.59849 * 24 4 3 26 26 C 1.47175 * 125.80591 * 180.14153 * 25 24 4 27 27 O 1.21530 * 119.99994 * 180.30311 * 26 25 24 28 28 O 1.34821 * 120.00042 * 0.30911 * 26 25 24 29 29 H 1.09000 * 109.47111 * 90.01936 * 1 2 3 30 30 H 1.09004 * 109.46954 * 210.02442 * 1 2 3 31 31 H 1.09002 * 109.47108 * 330.02328 * 1 2 3 32 32 H 1.07993 * 126.53268 * 0.03754 * 3 2 1 33 33 H 1.09000 * 109.46888 * 296.95702 * 10 8 7 34 34 H 1.08995 * 109.46828 * 56.95480 * 10 8 7 35 35 H 1.09000 * 109.47290 * 176.95845 * 10 8 7 36 36 H 1.09005 * 109.46906 * 84.70121 * 14 13 11 37 37 H 1.09001 * 109.47437 * 204.70010 * 14 13 11 38 38 H 1.08999 * 109.47366 * 324.70337 * 14 13 11 39 39 H 1.09007 * 109.46581 * 209.99402 * 15 13 11 40 40 H 1.08996 * 109.47020 * 329.99272 * 15 13 11 41 41 H 0.96999 * 119.99900 * 180.02562 * 19 18 16 42 42 H 0.96701 * 116.99856 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1251 0.0000 4 6 3.6278 0.6665 -0.0006 5 6 4.8395 1.5019 -0.0013 6 8 4.7424 2.7132 -0.0019 7 8 6.0572 0.9232 -0.0024 8 6 7.2079 1.8089 -0.0037 9 1 6.9535 2.7358 0.5102 10 6 7.6107 2.1196 -1.4466 11 6 8.3571 1.1403 0.7059 12 8 8.3227 -0.0519 0.9261 13 7 9.4230 1.8671 1.0957 14 6 9.4189 3.3223 0.9262 15 6 10.5858 1.2020 1.6887 16 6 11.5581 0.8253 0.6007 17 1 11.3323 1.0577 -0.4296 18 6 12.7355 0.1831 0.9204 19 7 13.0103 -0.1004 2.1749 20 14 13.9405 -0.2845 -0.4283 21 1 14.8973 0.8303 -0.6454 22 1 14.6852 -1.5045 -0.0257 23 1 13.1969 -0.5507 -1.6858 24 8 3.5991 -0.6787 -0.0064 25 6 2.3204 -1.0979 -0.0007 26 6 1.8740 -2.5003 -0.0013 27 8 0.6868 -2.7600 -0.0013 28 8 2.7821 -3.4968 -0.0018 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0263 2.1583 0.0006 33 1 7.9168 1.1995 -1.9444 34 1 6.7621 2.5537 -1.9752 35 1 8.4401 2.8268 -1.4480 36 1 8.9178 3.7856 1.7761 37 1 10.4453 3.6843 0.8680 38 1 8.8903 3.5797 0.0083 39 1 11.0717 1.8784 2.3920 40 1 10.2618 0.3034 2.2137 41 1 13.8388 -0.5519 2.3999 42 1 2.4410 -4.4016 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607604543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:05 Heat of formation + Delta-G solvation = -180.505185 kcal Electronic energy + Delta-G solvation = -29045.734251 eV Core-core repulsion = 24572.871327 eV Total energy + Delta-G solvation = -4472.862923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.39442 -40.78276 -40.34871 -38.98296 -36.78294 -36.67792 -34.94435 -34.67657 -32.90444 -31.96855 -31.22450 -28.39858 -27.82512 -26.34171 -25.99915 -24.34202 -23.10453 -22.25567 -21.53209 -20.44158 -18.98654 -18.88866 -18.26610 -17.87307 -17.35327 -16.98520 -16.57233 -16.23176 -16.12656 -15.51031 -15.29100 -14.70493 -14.54894 -14.35735 -14.02111 -13.75173 -13.70925 -13.58349 -13.34251 -13.18139 -12.94482 -12.60732 -12.43795 -12.23607 -12.11730 -12.07879 -11.81203 -11.51230 -11.28004 -11.26117 -11.17490 -10.96054 -10.85714 -10.60376 -10.31281 -10.20195 -9.69139 -9.37824 -8.98896 -8.47901 -7.76840 -6.08802 -4.14270 -0.08174 1.15674 1.60844 2.14515 2.29886 2.43658 2.76368 3.17050 3.27669 3.34904 3.39212 3.75254 4.05817 4.26841 4.40381 4.53335 4.66632 4.77070 4.82680 4.91857 4.98989 5.10175 5.22977 5.25869 5.35441 5.39923 5.51864 5.59858 5.62465 5.70369 5.81946 5.95442 5.98818 6.09378 6.17088 6.20738 6.93299 7.28578 7.33649 7.36325 7.44222 7.86844 8.16225 8.23643 8.79142 8.94384 9.50960 10.99358 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.002467 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.733689 B =11347.541585 C =12467.709338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.087 4.087 3 C -0.127 4.127 4 C 0.001 3.999 5 C 0.549 3.451 6 O -0.477 6.477 7 O -0.310 6.310 8 C 0.070 3.930 9 H 0.107 0.893 10 C -0.166 4.166 11 C 0.509 3.491 12 O -0.516 6.516 13 N -0.595 5.595 14 C 0.072 3.928 15 C 0.245 3.755 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 O -0.118 6.118 25 C -0.032 4.032 26 C 0.574 3.426 27 O -0.486 6.486 28 O -0.495 6.495 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.178 0.822 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.641 3.642 -5.410 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.053 4.053 5 C 0.391 3.609 6 O -0.366 6.366 7 O -0.224 6.224 8 C 0.012 3.988 9 H 0.125 0.875 10 C -0.223 4.223 11 C 0.293 3.707 12 O -0.392 6.392 13 N -0.329 5.329 14 C -0.072 4.072 15 C 0.127 3.873 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 O -0.012 6.012 25 C -0.084 4.084 26 C 0.417 3.583 27 O -0.376 6.376 28 O -0.307 6.307 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -23.368 3.384 -5.153 24.168 hybrid contribution 0.673 -0.580 -0.709 1.137 sum -22.695 2.805 -5.863 23.607 Atomic orbital electron populations 1.20527 0.86855 1.04389 1.03626 1.20635 0.98238 0.89881 1.00143 1.21873 0.89237 1.01214 1.02345 1.21168 0.93764 0.80588 1.09740 1.19302 0.82672 0.85343 0.73536 1.90926 1.86770 1.12919 1.45996 1.86789 1.13335 1.39966 1.82326 1.22854 0.83316 0.93195 0.99419 0.87493 1.22203 1.02957 1.03928 0.93241 1.19677 0.83066 0.87545 0.80398 1.90725 1.79324 1.14536 1.54579 1.48075 1.17445 1.06691 1.60647 1.21878 1.03707 0.81460 1.00179 1.19389 0.80454 0.93694 0.93772 1.21416 1.03023 1.38724 0.93721 0.92327 1.24940 0.98043 0.95401 0.95679 1.69930 1.25111 1.41308 1.16845 0.86477 0.80818 0.78043 0.81978 1.20603 1.21043 1.19845 1.84312 1.27219 1.20916 1.68742 1.20860 0.81991 0.92131 1.13467 1.18862 0.83265 0.83444 0.72726 1.90966 1.16934 1.83204 1.46485 1.84703 1.41377 1.19708 1.84916 0.89987 0.89249 0.90407 0.80417 0.90395 0.91121 0.89089 0.93337 0.89964 0.92170 0.94541 0.93528 0.92615 0.71726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.80 36.00 0.35 -0.30 16 2 C -0.09 -0.81 6.18 -104.53 -0.65 -1.46 16 3 C -0.13 -1.22 10.55 -39.49 -0.42 -1.64 16 4 C 0.00 0.01 7.19 -36.53 -0.26 -0.26 16 5 C 0.55 7.88 7.93 34.36 0.27 8.15 16 6 O -0.48 -6.86 16.12 -19.28 -0.31 -7.17 16 7 O -0.31 -5.28 9.47 -48.01 -0.45 -5.73 16 8 C 0.07 1.15 2.15 -27.88 -0.06 1.09 16 9 H 0.11 1.53 6.40 -51.93 -0.33 1.20 16 10 C -0.17 -2.27 9.29 37.16 0.35 -1.92 16 11 C 0.51 10.83 6.97 -10.98 -0.08 10.75 16 12 O -0.52 -13.44 16.12 -13.62 -0.22 -13.66 16 13 N -0.59 -12.45 2.86 -182.95 -0.52 -12.97 16 14 C 0.07 1.09 9.85 59.85 0.59 1.67 16 15 C 0.25 6.33 5.17 -5.19 -0.03 6.30 16 16 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 O -0.12 -1.60 10.68 1.27 0.01 -1.58 16 25 C -0.03 -0.36 7.19 -36.53 -0.26 -0.62 16 26 C 0.57 5.80 8.33 34.36 0.29 6.09 16 27 O -0.49 -5.20 15.50 -19.29 -0.30 -5.50 16 28 O -0.50 -4.26 13.44 -42.24 -0.57 -4.82 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.67 6.43 -51.93 -0.33 0.34 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.12 6.02 -51.93 -0.31 0.81 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 38 H 0.06 0.74 4.70 -51.93 -0.24 0.50 16 39 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.42 1.28 9.11 45.56 0.42 1.69 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -36.28 374.79 -5.43 -41.71 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -4.11 Total: -1.38 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -0.33 Total: 14.46 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.21 Total: -38.50 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.84 Total: -38.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.28 -5.43 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607604543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.798 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds