Wall clock time and date at job start Tue Mar 31 2020 22:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40037 * 126.53980 * 2 1 4 4 C 1.36635 * 106.92612 * 180.02562 * 3 2 1 5 5 C 1.47178 * 125.80255 * 179.97438 * 4 3 2 6 6 O 1.21525 * 120.00451 * 359.97438 * 5 4 3 7 7 O 1.34822 * 119.99982 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99874 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47306 * 29.99909 * 8 7 5 10 10 C 1.52997 * 109.47156 * 269.99553 * 8 7 5 11 11 C 1.50705 * 109.46993 * 149.99738 * 8 7 5 12 12 O 1.21288 * 119.99736 * 14.97312 * 11 8 7 13 13 N 1.34775 * 120.00071 * 194.97460 * 11 8 7 14 14 C 1.46497 * 119.99963 * 4.86988 * 13 11 8 15 15 C 1.46501 * 119.99706 * 184.87809 * 13 11 8 16 16 C 1.50702 * 109.47099 * 90.00044 * 15 13 11 17 17 H 1.08001 * 120.00233 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99731 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46733 * 89.99753 * 20 18 16 22 22 H 1.48494 * 109.47397 * 209.99299 * 20 18 16 23 23 H 1.48497 * 109.46929 * 330.00040 * 20 18 16 24 24 O 1.34552 * 108.39135 * 0.24484 * 4 3 2 25 25 C 1.34557 * 109.36978 * 359.59849 * 24 4 3 26 26 C 1.47175 * 125.80591 * 180.14153 * 25 24 4 27 27 O 1.21530 * 119.99994 * 180.30311 * 26 25 24 28 28 O 1.34821 * 120.00042 * 0.30911 * 26 25 24 29 29 H 1.09000 * 109.47111 * 90.01936 * 1 2 3 30 30 H 1.09004 * 109.46954 * 210.02442 * 1 2 3 31 31 H 1.09002 * 109.47108 * 330.02328 * 1 2 3 32 32 H 1.07993 * 126.53268 * 0.03754 * 3 2 1 33 33 H 1.09000 * 109.46888 * 296.95702 * 10 8 7 34 34 H 1.08995 * 109.46828 * 56.95480 * 10 8 7 35 35 H 1.09000 * 109.47290 * 176.95845 * 10 8 7 36 36 H 1.09005 * 109.46906 * 84.70121 * 14 13 11 37 37 H 1.09001 * 109.47437 * 204.70010 * 14 13 11 38 38 H 1.08999 * 109.47366 * 324.70337 * 14 13 11 39 39 H 1.09007 * 109.46581 * 209.99402 * 15 13 11 40 40 H 1.08996 * 109.47020 * 329.99272 * 15 13 11 41 41 H 0.96999 * 119.99900 * 180.02562 * 19 18 16 42 42 H 0.96701 * 116.99856 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1251 0.0000 4 6 3.6278 0.6665 -0.0006 5 6 4.8395 1.5019 -0.0013 6 8 4.7424 2.7132 -0.0019 7 8 6.0572 0.9232 -0.0024 8 6 7.2079 1.8089 -0.0037 9 1 6.9535 2.7358 0.5102 10 6 7.6107 2.1196 -1.4466 11 6 8.3571 1.1403 0.7059 12 8 8.3227 -0.0519 0.9261 13 7 9.4230 1.8671 1.0957 14 6 9.4189 3.3223 0.9262 15 6 10.5858 1.2020 1.6887 16 6 11.5581 0.8253 0.6007 17 1 11.3323 1.0577 -0.4296 18 6 12.7355 0.1831 0.9204 19 7 13.0103 -0.1004 2.1749 20 14 13.9405 -0.2845 -0.4283 21 1 14.8973 0.8303 -0.6454 22 1 14.6852 -1.5045 -0.0257 23 1 13.1969 -0.5507 -1.6858 24 8 3.5991 -0.6787 -0.0064 25 6 2.3204 -1.0979 -0.0007 26 6 1.8740 -2.5003 -0.0013 27 8 0.6868 -2.7600 -0.0013 28 8 2.7821 -3.4968 -0.0018 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0263 2.1583 0.0006 33 1 7.9168 1.1995 -1.9444 34 1 6.7621 2.5537 -1.9752 35 1 8.4401 2.8268 -1.4480 36 1 8.9178 3.7856 1.7761 37 1 10.4453 3.6843 0.8680 38 1 8.8903 3.5797 0.0083 39 1 11.0717 1.8784 2.3920 40 1 10.2618 0.3034 2.2137 41 1 13.8388 -0.5519 2.3999 42 1 2.4410 -4.4016 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607604543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:05 Heat of formation + Delta-G solvation = -205.258298 kcal Electronic energy + Delta-G solvation = -29046.807626 eV Core-core repulsion = 24572.871327 eV Total energy + Delta-G solvation = -4473.936299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.24299 -41.98169 -41.14471 -40.53616 -37.93860 -37.47683 -36.72017 -35.45061 -34.87821 -33.28041 -32.18886 -29.71432 -29.03864 -27.64531 -27.11827 -25.90408 -24.41491 -23.42101 -22.49374 -21.41393 -20.50060 -19.69125 -19.26400 -18.71781 -18.70037 -18.33907 -18.19987 -17.62535 -17.25309 -16.99615 -16.44034 -16.24251 -16.14151 -15.29765 -14.95201 -14.83970 -14.71899 -14.47754 -14.35873 -14.13524 -14.12112 -13.89917 -13.69348 -13.58644 -13.36214 -13.22716 -13.13331 -12.91290 -12.80544 -12.67869 -12.48813 -12.30110 -12.20804 -12.09724 -11.94180 -11.72559 -11.06286 -10.69326 -10.64718 -10.20985 -9.54060 -8.23729 -6.38545 -0.96642 0.33103 0.68802 1.19296 1.37318 1.40662 1.44361 1.49804 1.53089 1.56651 1.93361 2.29822 2.41575 3.06665 3.23309 3.33595 3.35914 3.66552 3.76438 3.82728 3.93817 4.08246 4.23809 4.37534 4.50293 4.56160 4.65540 4.73919 4.79071 4.82558 4.89042 4.90743 5.01105 5.09034 5.10305 5.19869 5.38448 5.40381 5.50450 5.76942 6.02203 6.19909 6.56223 6.70403 6.72293 7.17193 7.34557 8.83954 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016354 B = 0.002467 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.733689 B =11347.541585 C =12467.709338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.032 4.032 5 C 0.552 3.448 6 O -0.478 6.478 7 O -0.337 6.337 8 C 0.081 3.919 9 H 0.134 0.866 10 C -0.161 4.161 11 C 0.500 3.500 12 O -0.580 6.580 13 N -0.598 5.598 14 C 0.064 3.936 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.271 1.271 24 O -0.148 6.148 25 C -0.050 4.050 26 C 0.577 3.423 27 O -0.494 6.494 28 O -0.502 6.502 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.032 0.968 40 H -0.001 1.001 41 H 0.267 0.733 42 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.185 5.652 -7.052 26.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.117 4.117 4 C -0.084 4.084 5 C 0.396 3.604 6 O -0.367 6.367 7 O -0.253 6.253 8 C 0.023 3.977 9 H 0.151 0.849 10 C -0.218 4.218 11 C 0.286 3.714 12 O -0.459 6.459 13 N -0.330 5.330 14 C -0.078 4.078 15 C 0.137 3.863 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.209 1.209 23 H -0.196 1.196 24 O -0.043 6.043 25 C -0.102 4.102 26 C 0.420 3.580 27 O -0.385 6.385 28 O -0.318 6.318 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.225 0.775 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -24.934 5.445 -6.807 26.413 hybrid contribution 1.051 -1.239 -0.142 1.630 sum -23.883 4.206 -6.949 25.227 Atomic orbital electron populations 1.20639 0.84659 1.05197 1.04676 1.21030 0.99490 0.89015 0.98516 1.22259 0.87705 1.02531 0.99247 1.21174 0.94025 0.80526 1.12668 1.19462 0.82202 0.85641 0.73132 1.90902 1.86718 1.12760 1.46355 1.86783 1.14416 1.41086 1.82984 1.22756 0.81586 0.92835 1.00528 0.84868 1.22233 1.04645 1.03637 0.91258 1.20606 0.84141 0.87015 0.79606 1.90684 1.80810 1.17426 1.57016 1.48058 1.16061 1.09086 1.59832 1.22231 1.04725 0.77677 1.03152 1.18883 0.81835 0.92220 0.93359 1.21697 1.03591 1.38928 0.94011 0.92291 1.25876 1.00038 0.95185 0.98081 1.70054 1.25835 1.42006 1.18926 0.85391 0.78463 0.78127 0.78693 1.18640 1.20881 1.19613 1.84269 1.28566 1.21588 1.69915 1.21336 0.81701 0.93294 1.13844 1.18777 0.83183 0.83477 0.72531 1.90958 1.17094 1.83353 1.47069 1.84674 1.41526 1.21075 1.84488 0.88642 0.90115 0.87902 0.77468 0.92198 0.88372 0.87374 0.90651 0.90040 0.88693 0.94983 0.98334 0.92364 0.69247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.80 71.23 0.70 -0.31 16 2 C -0.08 -1.32 6.18 -19.80 -0.12 -1.44 16 3 C -0.10 -1.66 10.55 22.33 0.24 -1.43 16 4 C -0.03 -0.78 7.19 24.24 0.17 -0.61 16 5 C 0.55 15.39 7.93 70.17 0.56 15.94 16 6 O -0.48 -12.68 16.12 19.75 0.32 -12.37 16 7 O -0.34 -11.57 9.47 -50.47 -0.48 -12.05 16 8 C 0.08 2.56 2.15 29.85 0.06 2.62 16 9 H 0.13 3.48 6.40 -2.39 -0.02 3.46 16 10 C -0.16 -4.07 9.29 71.98 0.67 -3.40 16 11 C 0.50 21.75 6.97 87.66 0.61 22.37 16 12 O -0.58 -31.94 16.12 15.28 0.25 -31.70 16 13 N -0.60 -25.30 2.86 -851.11 -2.43 -27.73 16 14 C 0.06 1.80 9.85 127.77 1.26 3.06 16 15 C 0.26 13.86 5.17 85.63 0.44 14.30 16 16 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 17 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 20 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 O -0.15 -4.07 10.68 -4.49 -0.05 -4.12 16 25 C -0.05 -1.10 7.19 24.25 0.17 -0.93 16 26 C 0.58 11.50 8.33 70.17 0.58 12.08 16 27 O -0.49 -10.18 15.50 19.74 0.31 -9.87 16 28 O -0.50 -8.63 13.44 -55.98 -0.75 -9.39 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.05 6.43 -2.39 -0.02 1.04 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 2.33 6.02 -2.39 -0.01 2.31 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 38 H 0.09 2.03 4.70 -2.39 -0.01 2.02 16 39 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 40 H 0.00 -0.09 7.36 -2.39 -0.02 -0.11 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 42 H 0.44 2.51 9.11 -74.06 -0.67 1.83 16 Total: -1.00 -82.96 374.79 5.94 -77.02 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.42 Total: 6.95 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 6.05 Total: 32.51 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.15 Total: -83.43 kcal Atomic # 8 Polarization: -79.08 SS G_CDS: -0.41 Total: -79.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -82.96 5.94 -77.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607604543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.240 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds