Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48494 * 109.47112 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47304 * 120.00159 * 3 2 1 7 7 C 1.38948 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99886 * 158.47349 * 7 2 1 9 9 N 1.37094 * 120.00323 * 338.47260 * 7 2 1 10 10 C 1.46504 * 119.99705 * 325.61234 * 9 7 2 11 11 C 1.53000 * 109.47257 * 265.50079 * 10 9 7 12 12 C 1.50696 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00072 * 359.97438 * 12 11 10 14 14 O 1.34236 * 120.00065 * 180.02562 * 12 11 10 15 15 C 1.34772 * 120.00287 * 145.60824 * 9 7 2 16 16 O 1.21293 * 120.00029 * 179.97438 * 15 9 7 17 17 C 1.50696 * 119.99948 * 0.02562 * 15 9 7 18 18 H 1.09002 * 115.56477 * 325.69851 * 17 15 9 19 19 C 1.53007 * 117.49999 * 111.38817 * 17 15 9 20 20 C 1.53003 * 59.99932 * 107.48933 * 19 17 15 21 21 H 1.08996 * 117.49911 * 252.50944 * 20 19 17 22 22 C 1.50700 * 117.49742 * 107.48932 * 20 19 17 23 23 C 1.38258 * 120.00066 * 351.38119 * 22 20 19 24 24 C 1.38212 * 120.07263 * 179.97438 * 23 22 20 25 25 C 1.38260 * 120.06762 * 0.03987 * 24 23 22 26 26 C 1.38367 * 119.99940 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.03302 * 180.02562 * 26 25 24 28 28 C 1.38369 * 119.99869 * 171.09913 * 22 20 19 29 29 F 1.35098 * 120.03484 * 0.02562 * 28 22 20 30 30 H 0.96996 * 120.00370 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.47140 * 25.50261 * 10 9 7 32 32 H 1.08998 * 109.46833 * 145.50058 * 10 9 7 33 33 H 1.08993 * 109.46925 * 300.00340 * 11 10 9 34 34 H 1.09006 * 109.46867 * 60.00144 * 11 10 9 35 35 H 0.96695 * 117.00037 * 179.97438 * 14 12 11 36 36 H 1.09003 * 117.49721 * 214.97822 * 19 17 15 37 37 H 1.08996 * 117.49594 * 359.97401 * 19 17 15 38 38 H 1.08004 * 119.96608 * 359.97036 * 23 22 20 39 39 H 1.07993 * 119.96748 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.00169 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0323 -1.2357 -0.3437 9 7 1.3952 -2.3494 0.4346 10 6 0.4199 -2.2889 1.5261 11 6 1.1213 -2.5827 2.8537 12 6 0.1180 -2.5211 3.9764 13 8 -1.0394 -2.2677 3.7391 14 8 0.5101 -2.7467 5.2402 15 6 1.6891 -3.5317 -0.1418 16 8 1.1465 -4.5458 0.2436 17 6 2.6927 -3.5940 -1.2642 18 1 2.7069 -2.7317 -1.9308 19 6 4.0252 -4.2913 -0.9826 20 6 2.9829 -4.9655 -1.8771 21 1 2.4479 -5.8228 -1.4685 22 6 3.2665 -5.0207 -3.3562 23 6 4.3386 -4.3231 -3.8810 24 6 4.6004 -4.3731 -5.2372 25 6 3.7902 -5.1203 -6.0720 26 6 2.7163 -5.8194 -5.5499 27 9 1.9245 -6.5502 -6.3649 28 6 2.4574 -5.7744 -4.1881 29 9 1.4128 -6.4605 -3.6752 30 1 -0.4850 0.8400 0.0004 31 1 -0.0240 -1.2940 1.5620 32 1 -0.3616 -3.0295 1.3564 33 1 1.5652 -3.5775 2.8178 34 1 1.9029 -1.8420 3.0234 35 1 -0.1693 -2.6958 5.9264 36 1 4.9160 -3.8877 -1.4640 37 1 4.1760 -4.7047 0.0146 38 1 4.9722 -3.7383 -3.2305 39 1 5.4385 -3.8278 -5.6452 40 1 3.9960 -5.1590 -7.1314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = -161.906033 kcal Electronic energy + Delta-G solvation = -28941.830526 eV Core-core repulsion = 24358.686607 eV Total energy + Delta-G solvation = -4583.143919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.38259 -48.44145 -39.90604 -39.63952 -38.55055 -36.28542 -35.71628 -34.80178 -32.01021 -30.94112 -30.46333 -30.21494 -25.36953 -25.04410 -24.17263 -22.87830 -22.26419 -20.77567 -20.22856 -19.08645 -17.95150 -17.79151 -17.44329 -16.87182 -16.73099 -16.22843 -16.20110 -15.86770 -15.50080 -15.11757 -14.86367 -14.70889 -14.50156 -14.29931 -14.17045 -13.67186 -13.31732 -12.92952 -12.71019 -12.56659 -12.43879 -12.34451 -12.02125 -11.83432 -11.48983 -11.32654 -11.18503 -11.12390 -11.10563 -10.73224 -10.51122 -10.47383 -10.17454 -10.08946 -10.03395 -9.25862 -8.80347 -8.69824 -8.51722 -7.70485 -6.47925 -4.17890 0.89499 0.91685 2.65158 3.03001 3.14906 3.16039 3.22040 3.36770 3.60668 3.73032 4.01430 4.32663 4.38675 4.41632 4.64889 4.70626 4.85474 4.96429 5.00149 5.24193 5.34143 5.48188 5.58578 5.73563 5.76252 5.77503 5.87117 5.95512 5.98788 6.07515 6.12703 6.25908 6.30411 6.44297 6.60523 6.71691 6.79803 6.84901 7.24957 7.39022 7.75478 8.23695 8.29374 8.95127 9.36161 9.78923 10.53260 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003302 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.830257 B = 8478.186075 C = 9766.507771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.044 3.956 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.430 5.430 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.494 3.506 16 O -0.600 6.600 17 C -0.126 4.126 18 H 0.128 0.872 19 C -0.146 4.146 20 C -0.112 4.112 21 H 0.128 0.872 22 C -0.043 4.043 23 C -0.104 4.104 24 C -0.098 4.098 25 C -0.138 4.138 26 C 0.066 3.934 27 F -0.132 7.132 28 C 0.074 3.926 29 F -0.123 7.123 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 -4.520 -4.390 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.475 4.475 8 H 0.112 0.888 9 N -0.147 5.147 10 C 0.001 3.999 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.283 3.717 16 O -0.486 6.486 17 C -0.147 4.147 18 H 0.146 0.854 19 C -0.183 4.183 20 C -0.130 4.130 21 H 0.145 0.855 22 C -0.044 4.044 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.157 4.157 26 C 0.046 3.954 27 F -0.110 7.110 28 C 0.054 3.946 29 F -0.101 7.101 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.259 0.741 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.997 -4.845 -4.587 12.019 hybrid contribution -0.497 0.761 0.333 0.968 sum 9.500 -4.084 -4.254 11.182 Atomic orbital electron populations 1.69914 1.06292 1.28301 1.44030 1.25406 0.95069 1.00051 0.95842 0.86204 0.79394 0.81161 0.79206 1.19610 1.20857 1.19674 1.19414 0.97064 0.84968 1.46037 0.88753 1.43313 1.37600 1.05745 1.28055 1.21236 0.90688 1.05924 0.82055 1.21853 0.97685 1.05025 0.91807 1.23771 0.89212 0.71679 0.82838 1.90709 1.20749 1.44406 1.84227 1.84588 1.46616 1.83973 1.18464 1.19444 0.84724 0.84186 0.83340 1.90552 1.56259 1.35284 1.66496 1.22226 0.97146 0.94981 1.00353 0.85441 1.23028 0.92190 1.02499 1.00616 1.20953 1.04844 0.98942 0.88308 0.85452 1.19223 0.94508 0.95978 0.94694 1.21104 0.96743 0.98861 0.95478 1.21025 0.99395 0.98189 0.92976 1.21018 0.94520 0.98693 1.01434 1.17670 0.93481 0.97752 0.86520 1.91516 1.72679 1.75109 1.71735 1.17497 0.88850 0.98138 0.90139 1.91547 1.54442 1.77034 1.87066 0.91622 0.86241 0.91738 0.88424 0.87780 0.74116 0.88079 0.88024 0.83936 0.84294 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.91 11.31 55.50 0.63 -21.28 16 2 C 0.04 1.04 4.94 -17.47 -0.09 0.95 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.35 -8.13 8.43 -14.94 -0.13 -8.26 16 8 H 0.09 2.05 7.16 -52.49 -0.38 1.67 16 9 N -0.43 -10.23 2.55 -114.81 -0.29 -10.52 16 10 C 0.12 2.94 4.20 -4.04 -0.02 2.92 16 11 C -0.12 -2.41 6.11 -27.89 -0.17 -2.58 16 12 C 0.48 8.81 8.33 36.00 0.30 9.11 16 13 O -0.51 -10.95 16.74 -18.75 -0.31 -11.27 16 14 O -0.52 -7.42 13.42 -39.27 -0.53 -7.94 16 15 C 0.49 11.43 7.39 -10.99 -0.08 11.35 16 16 O -0.60 -15.29 15.91 5.55 0.09 -15.20 16 17 C -0.13 -2.35 4.63 -91.77 -0.43 -2.78 16 18 H 0.13 2.38 7.40 -51.93 -0.38 2.00 16 19 C -0.15 -2.11 9.56 -26.73 -0.26 -2.36 16 20 C -0.11 -1.84 5.31 -91.77 -0.49 -2.33 16 21 H 0.13 2.36 7.39 -51.93 -0.38 1.98 16 22 C -0.04 -0.62 5.62 -104.57 -0.59 -1.21 16 23 C -0.10 -1.17 9.30 -39.58 -0.37 -1.54 16 24 C -0.10 -0.92 10.04 -39.58 -0.40 -1.31 16 25 C -0.14 -1.43 10.02 -39.53 -0.40 -1.82 16 26 C 0.07 0.89 7.31 -39.37 -0.29 0.60 16 27 F -0.13 -1.88 17.18 2.25 0.04 -1.84 16 28 C 0.07 1.15 7.25 -39.37 -0.29 0.86 16 29 F -0.12 -2.17 16.52 2.25 0.04 -2.14 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.12 3.05 5.30 -51.93 -0.28 2.78 16 32 H 0.06 1.65 7.52 -51.93 -0.39 1.26 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.40 3.73 9.10 45.56 0.41 4.15 16 36 H 0.10 1.13 6.18 -51.93 -0.32 0.81 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.14 1.33 6.02 -52.48 -0.32 1.01 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -31.12 357.92 -6.93 -38.05 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.28 Total: 11.87 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.67 Total: 1.61 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.33 Total: -31.80 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.75 Total: -34.41 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.12 -6.93 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.851 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds