Wall clock time and date at job start Tue Mar 31 2020 22:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99834 * 2 1 4 4 H 1.48494 * 109.47112 * 240.00308 * 3 2 1 5 5 H 1.48502 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47304 * 120.00159 * 3 2 1 7 7 C 1.38948 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99886 * 158.47349 * 7 2 1 9 9 N 1.37094 * 120.00323 * 338.47260 * 7 2 1 10 10 C 1.46504 * 119.99705 * 325.61234 * 9 7 2 11 11 C 1.53000 * 109.47257 * 265.50079 * 10 9 7 12 12 C 1.50696 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00072 * 359.97438 * 12 11 10 14 14 O 1.34236 * 120.00065 * 180.02562 * 12 11 10 15 15 C 1.34772 * 120.00287 * 145.60824 * 9 7 2 16 16 O 1.21293 * 120.00029 * 179.97438 * 15 9 7 17 17 C 1.50696 * 119.99948 * 0.02562 * 15 9 7 18 18 H 1.09002 * 115.56477 * 325.69851 * 17 15 9 19 19 C 1.53007 * 117.49999 * 111.38817 * 17 15 9 20 20 C 1.53003 * 59.99932 * 107.48933 * 19 17 15 21 21 H 1.08996 * 117.49911 * 252.50944 * 20 19 17 22 22 C 1.50700 * 117.49742 * 107.48932 * 20 19 17 23 23 C 1.38258 * 120.00066 * 351.38119 * 22 20 19 24 24 C 1.38212 * 120.07263 * 179.97438 * 23 22 20 25 25 C 1.38260 * 120.06762 * 0.03987 * 24 23 22 26 26 C 1.38367 * 119.99940 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.03302 * 180.02562 * 26 25 24 28 28 C 1.38369 * 119.99869 * 171.09913 * 22 20 19 29 29 F 1.35098 * 120.03484 * 0.02562 * 28 22 20 30 30 H 0.96996 * 120.00370 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.47140 * 25.50261 * 10 9 7 32 32 H 1.08998 * 109.46833 * 145.50058 * 10 9 7 33 33 H 1.08993 * 109.46925 * 300.00340 * 11 10 9 34 34 H 1.09006 * 109.46867 * 60.00144 * 11 10 9 35 35 H 0.96695 * 117.00037 * 179.97438 * 14 12 11 36 36 H 1.09003 * 117.49721 * 214.97822 * 19 17 15 37 37 H 1.08996 * 117.49594 * 359.97401 * 19 17 15 38 38 H 1.08004 * 119.96608 * 359.97036 * 23 22 20 39 39 H 1.07993 * 119.96748 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.00169 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0323 -1.2357 -0.3437 9 7 1.3952 -2.3494 0.4346 10 6 0.4199 -2.2889 1.5261 11 6 1.1213 -2.5827 2.8537 12 6 0.1180 -2.5211 3.9764 13 8 -1.0394 -2.2677 3.7391 14 8 0.5101 -2.7467 5.2402 15 6 1.6891 -3.5317 -0.1418 16 8 1.1465 -4.5458 0.2436 17 6 2.6927 -3.5940 -1.2642 18 1 2.7069 -2.7317 -1.9308 19 6 4.0252 -4.2913 -0.9826 20 6 2.9829 -4.9655 -1.8771 21 1 2.4479 -5.8228 -1.4685 22 6 3.2665 -5.0207 -3.3562 23 6 4.3386 -4.3231 -3.8810 24 6 4.6004 -4.3731 -5.2372 25 6 3.7902 -5.1203 -6.0720 26 6 2.7163 -5.8194 -5.5499 27 9 1.9245 -6.5502 -6.3649 28 6 2.4574 -5.7744 -4.1881 29 9 1.4128 -6.4605 -3.6752 30 1 -0.4850 0.8400 0.0004 31 1 -0.0240 -1.2940 1.5620 32 1 -0.3616 -3.0295 1.3564 33 1 1.5652 -3.5775 2.8178 34 1 1.9029 -1.8420 3.0234 35 1 -0.1693 -2.6958 5.9264 36 1 4.9160 -3.8877 -1.4640 37 1 4.1760 -4.7047 0.0146 38 1 4.9722 -3.7383 -3.2305 39 1 5.4385 -3.8278 -5.6452 40 1 3.9960 -5.1590 -7.1314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:30 Heat of formation + Delta-G solvation = -180.465950 kcal Electronic energy + Delta-G solvation = -28942.635344 eV Core-core repulsion = 24358.686607 eV Total energy + Delta-G solvation = -4583.948738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.50460 -49.59698 -41.41554 -40.96230 -39.91261 -37.66987 -37.10554 -36.56699 -33.81135 -32.48522 -31.59619 -31.20019 -27.11477 -26.68350 -25.27200 -24.08924 -23.50851 -22.07355 -21.59945 -20.85562 -19.27603 -19.05952 -18.78247 -18.13834 -17.96737 -17.63418 -17.51859 -17.34590 -16.98981 -16.40878 -16.21408 -16.01771 -15.96912 -15.53857 -15.47429 -15.16692 -14.84151 -14.34094 -14.08869 -14.02692 -13.63642 -13.55098 -13.34375 -13.18119 -12.95959 -12.80722 -12.58647 -12.56813 -12.49500 -12.15469 -12.09873 -11.95887 -11.68970 -11.60791 -11.40993 -11.02957 -10.44376 -9.74030 -9.67807 -9.57242 -8.28791 -6.04888 -0.05111 -0.02439 1.16324 1.45830 1.53963 1.63161 1.81798 2.00546 2.36881 2.38530 2.71917 2.96696 3.00924 3.16387 3.36116 3.53208 3.74787 3.89720 3.95549 3.97265 4.07284 4.11086 4.21452 4.25854 4.47039 4.57616 4.71862 4.77274 4.84800 4.89378 4.97358 5.02691 5.05014 5.17758 5.27179 5.34871 5.39677 5.51609 5.57862 5.80629 5.94199 6.41045 6.97855 7.12394 7.54983 7.98241 8.73734 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003302 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.830257 B = 8478.186075 C = 9766.507771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.003 4.003 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.352 4.352 8 H 0.117 0.883 9 N -0.441 5.441 10 C 0.128 3.872 11 C -0.115 4.115 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.506 6.506 15 C 0.480 3.520 16 O -0.638 6.638 17 C -0.152 4.152 18 H 0.129 0.871 19 C -0.107 4.107 20 C -0.111 4.111 21 H 0.092 0.908 22 C -0.060 4.060 23 C -0.096 4.096 24 C -0.077 4.077 25 C -0.123 4.123 26 C 0.047 3.953 27 F -0.143 7.143 28 C 0.032 3.968 29 F -0.152 7.152 30 H 0.270 0.730 31 H 0.099 0.901 32 H 0.026 0.974 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.427 0.573 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.171 0.829 39 H 0.188 0.812 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.059 -2.900 -5.341 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.205 4.205 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.479 4.479 8 H 0.134 0.866 9 N -0.158 5.158 10 C 0.004 3.996 11 C -0.153 4.153 12 C 0.338 3.662 13 O -0.442 6.442 14 O -0.319 6.319 15 C 0.270 3.730 16 O -0.526 6.526 17 C -0.172 4.172 18 H 0.147 0.853 19 C -0.144 4.144 20 C -0.130 4.130 21 H 0.110 0.890 22 C -0.061 4.061 23 C -0.114 4.114 24 C -0.095 4.095 25 C -0.142 4.142 26 C 0.027 3.973 27 F -0.122 7.122 28 C 0.012 3.988 29 F -0.130 7.130 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.045 0.955 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.288 0.712 36 H 0.166 0.834 37 H 0.118 0.882 38 H 0.189 0.811 39 H 0.205 0.795 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 14.527 -3.237 -5.510 15.871 hybrid contribution -1.905 0.183 0.624 2.013 sum 12.622 -3.054 -4.886 13.875 Atomic orbital electron populations 1.70069 1.08294 1.28870 1.46089 1.26346 0.95537 1.03447 0.95220 0.85107 0.77869 0.76144 0.80058 1.17865 1.22091 1.18544 1.19897 0.97794 0.84681 1.45491 0.86603 1.43575 1.37410 1.06396 1.28372 1.20990 0.90665 1.03368 0.84576 1.21599 0.97771 1.05626 0.90352 1.23397 0.88083 0.70879 0.83877 1.90709 1.22106 1.46321 1.85043 1.84500 1.47245 1.82851 1.17344 1.20290 0.85237 0.83442 0.83990 1.90514 1.57809 1.36432 1.67881 1.22063 0.99101 0.96463 0.99612 0.85299 1.23240 0.91639 0.99046 1.00426 1.20778 1.05524 0.96308 0.90384 0.89007 1.19205 0.96148 0.97616 0.93169 1.21479 0.95331 0.97623 0.96958 1.21580 0.99553 0.96565 0.91797 1.21503 0.92582 0.96746 1.03333 1.18016 0.94737 0.98820 0.85725 1.91480 1.73320 1.75626 1.71777 1.18019 0.89296 0.99839 0.91609 1.91460 1.55985 1.77969 1.87620 0.91991 0.88299 0.95520 0.88079 0.86051 0.71150 0.83372 0.88176 0.81149 0.79495 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.79 11.31 21.66 0.24 -47.54 16 2 C 0.00 -0.13 4.94 84.93 0.42 0.29 16 3 Si 0.99 36.61 29.60 68.60 2.03 38.64 16 4 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.29 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.35 -16.37 8.43 84.04 0.71 -15.66 16 8 H 0.12 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.44 -21.61 2.55 -635.54 -1.62 -23.23 16 10 C 0.13 6.37 4.20 86.38 0.36 6.73 16 11 C -0.11 -4.51 6.11 29.85 0.18 -4.33 16 12 C 0.49 18.09 8.33 71.23 0.59 18.69 16 13 O -0.55 -24.26 16.74 21.95 0.37 -23.89 16 14 O -0.51 -13.40 13.42 -51.47 -0.69 -14.09 16 15 C 0.48 23.07 7.39 87.66 0.65 23.72 16 16 O -0.64 -34.61 15.91 -3.07 -0.05 -34.66 16 17 C -0.15 -5.63 4.63 -11.54 -0.05 -5.69 16 18 H 0.13 4.70 7.40 -2.39 -0.02 4.68 16 19 C -0.11 -2.83 9.56 30.60 0.29 -2.54 16 20 C -0.11 -3.70 5.31 -11.54 -0.06 -3.76 16 21 H 0.09 3.68 7.39 -2.39 -0.02 3.66 16 22 C -0.06 -1.70 5.62 -19.83 -0.11 -1.81 16 23 C -0.10 -1.76 9.30 22.27 0.21 -1.56 16 24 C -0.08 -1.03 10.04 22.27 0.22 -0.80 16 25 C -0.12 -2.09 10.02 22.31 0.22 -1.86 16 26 C 0.05 1.24 7.31 22.41 0.16 1.41 16 27 F -0.14 -4.14 17.18 44.97 0.77 -3.37 16 28 C 0.03 1.03 7.25 22.41 0.16 1.19 16 29 F -0.15 -5.89 16.52 44.97 0.74 -5.15 16 30 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.10 5.35 5.30 -2.38 -0.01 5.33 16 32 H 0.03 1.47 7.52 -2.39 -0.02 1.45 16 33 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.12 4.32 8.14 -2.38 -0.02 4.30 16 35 H 0.43 6.98 9.10 -74.06 -0.67 6.31 16 36 H 0.15 2.50 6.18 -2.39 -0.01 2.49 16 37 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.17 2.12 6.02 -2.91 -0.02 2.10 16 39 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.44 357.92 6.21 -69.23 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.45 Total: 30.03 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 3.96 Total: 14.04 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.38 Total: -70.78 kcal Atomic # 8 Polarization: -72.27 SS G_CDS: -0.37 Total: -72.64 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 1.52 Total: -8.52 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -75.44 6.21 -69.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.236 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds