Wall clock time and date at job start Tue Mar 31 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48502 * 109.47271 * 240.00463 * 3 2 1 5 5 H 1.48507 * 109.46812 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47647 * 119.99736 * 3 2 1 7 7 C 1.38949 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00457 * 157.80001 * 7 2 1 9 9 N 1.37096 * 119.99919 * 337.80024 * 7 2 1 10 10 C 1.46502 * 120.00078 * 324.76113 * 9 7 2 11 11 C 1.52995 * 109.47243 * 269.72552 * 10 9 7 12 12 C 1.50699 * 109.47451 * 179.97438 * 11 10 9 13 13 O 1.20819 * 119.99860 * 0.02562 * 12 11 10 14 14 O 1.34225 * 119.99952 * 179.97438 * 12 11 10 15 15 C 1.34783 * 120.00112 * 144.48539 * 9 7 2 16 16 O 1.21290 * 119.99743 * 174.88609 * 15 9 7 17 17 C 1.50690 * 119.99949 * 354.88322 * 15 9 7 18 18 H 1.09009 * 115.55127 * 7.86838 * 17 15 9 19 19 C 1.52993 * 117.50239 * 222.19173 * 17 15 9 20 20 C 1.53003 * 117.50002 * 153.53317 * 17 15 9 21 21 H 1.08998 * 117.49662 * 359.97438 * 20 17 15 22 22 C 1.50702 * 117.50199 * 214.98326 * 20 17 15 23 23 C 1.38253 * 119.99696 * 299.99812 * 22 20 17 24 24 C 1.38219 * 120.06901 * 180.02562 * 23 22 20 25 25 C 1.38260 * 120.07108 * 359.97438 * 24 23 22 26 26 C 1.38367 * 119.99713 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.03524 * 180.02562 * 26 25 24 28 28 C 1.38370 * 119.99880 * 119.72415 * 22 20 17 29 29 F 1.35094 * 120.04042 * 359.97438 * 28 22 20 30 30 H 0.97000 * 120.00066 * 358.70134 * 1 2 3 31 31 H 1.09006 * 109.46843 * 29.72438 * 10 9 7 32 32 H 1.09003 * 109.47115 * 149.72426 * 10 9 7 33 33 H 1.09006 * 109.47108 * 299.99724 * 11 10 9 34 34 H 1.09000 * 109.47180 * 59.99385 * 11 10 9 35 35 H 0.96706 * 117.00069 * 180.02562 * 14 12 11 36 36 H 1.09005 * 117.50089 * 0.02562 * 19 17 15 37 37 H 1.09002 * 117.50289 * 145.02200 * 19 17 15 38 38 H 1.07999 * 119.96704 * 0.02562 * 23 22 20 39 39 H 1.07994 * 119.96484 * 180.02562 * 24 23 22 40 40 H 1.07993 * 120.00085 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0288 -1.2382 -0.3528 9 7 1.3996 -2.3464 0.4497 10 6 0.4494 -2.2812 1.5629 11 6 1.1972 -2.4738 2.8836 12 6 0.2200 -2.4061 4.0288 13 8 -0.9542 -2.2231 3.8109 14 8 0.6539 -2.5502 5.2908 15 6 1.6706 -3.5294 -0.1366 16 8 1.2045 -4.5526 0.3185 17 6 2.5525 -3.5809 -1.3573 18 1 3.0390 -2.6430 -1.6258 19 6 2.1270 -4.5077 -2.4978 20 6 3.3238 -4.8764 -1.6176 21 1 3.1935 -5.6913 -0.9056 22 6 4.6975 -4.7583 -2.2260 23 6 4.8562 -4.1648 -3.4645 24 6 6.1154 -4.0562 -4.0241 25 6 7.2189 -4.5403 -3.3462 26 6 7.0633 -5.1348 -2.1065 27 9 8.1411 -5.6076 -1.4432 28 6 5.8005 -5.2387 -1.5424 29 9 5.6469 -5.8133 -0.3294 30 1 -0.4850 0.8398 0.0190 31 1 -0.0438 -1.3091 1.5630 32 1 -0.2971 -3.0674 1.4499 33 1 1.6905 -3.4459 2.8835 34 1 1.9438 -1.6877 2.9965 35 1 -0.0102 -2.4996 5.9919 36 1 1.2088 -5.0800 -2.3653 37 1 2.3337 -4.1799 -3.5166 38 1 3.9955 -3.7857 -3.9953 39 1 6.2375 -3.5919 -4.9914 40 1 8.2022 -4.4551 -3.7847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:36 Heat of formation + Delta-G solvation = -161.648626 kcal Electronic energy + Delta-G solvation = -29072.193546 eV Core-core repulsion = 24489.060789 eV Total energy + Delta-G solvation = -4583.132757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.42137 -48.48489 -39.89907 -39.64681 -38.56219 -36.29466 -35.70415 -34.79209 -32.00442 -30.91463 -30.49577 -30.23502 -25.40816 -25.02698 -24.22377 -22.89105 -22.22695 -20.70953 -20.25730 -19.11656 -17.98076 -17.77461 -17.45579 -16.89753 -16.72488 -16.25552 -16.23747 -15.91353 -15.51295 -15.07184 -14.90524 -14.68097 -14.51493 -14.32974 -14.11473 -13.70939 -13.26441 -12.97134 -12.69908 -12.62936 -12.44996 -12.34538 -12.06637 -11.68915 -11.59033 -11.29704 -11.18240 -11.12968 -11.09510 -10.76375 -10.49727 -10.45720 -10.14407 -10.07049 -10.00536 -9.27432 -8.83038 -8.73708 -8.51635 -7.69488 -6.48215 -4.19771 0.87276 0.88997 2.66503 3.03120 3.14468 3.15758 3.18711 3.41116 3.57881 3.70720 4.01406 4.30910 4.37422 4.43112 4.63698 4.71095 4.85296 4.93523 5.00102 5.29341 5.37538 5.47960 5.62399 5.72374 5.74241 5.79757 5.89552 5.94938 5.99541 6.09255 6.11738 6.24426 6.33388 6.47618 6.59363 6.69284 6.79918 6.84977 7.23742 7.37557 7.74625 8.22249 8.30502 8.95133 9.35202 9.77817 10.51974 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.003566 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.089516 B = 7850.161931 C = 8909.037584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.046 3.954 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.430 5.430 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.515 6.515 14 O -0.524 6.524 15 C 0.497 3.503 16 O -0.602 6.602 17 C -0.132 4.132 18 H 0.129 0.871 19 C -0.139 4.139 20 C -0.113 4.113 21 H 0.125 0.875 22 C -0.043 4.043 23 C -0.103 4.103 24 C -0.097 4.097 25 C -0.138 4.138 26 C 0.066 3.934 27 F -0.132 7.132 28 C 0.073 3.927 29 F -0.124 7.124 30 H 0.273 0.727 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -4.212 -5.008 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.111 0.889 9 N -0.147 5.147 10 C 0.001 3.999 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.403 6.403 14 O -0.336 6.336 15 C 0.286 3.714 16 O -0.488 6.488 17 C -0.153 4.153 18 H 0.147 0.853 19 C -0.176 4.176 20 C -0.132 4.132 21 H 0.143 0.857 22 C -0.044 4.044 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.157 4.157 26 C 0.046 3.954 27 F -0.111 7.111 28 C 0.052 3.948 29 F -0.102 7.102 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.259 0.741 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.517 -4.544 -5.089 11.709 hybrid contribution 0.252 0.857 0.930 1.290 sum 9.769 -3.686 -4.159 11.239 Atomic orbital electron populations 1.69920 1.06255 1.28315 1.43895 1.25374 0.95025 0.99965 0.95773 0.86255 0.79473 0.81263 0.79310 1.19558 1.20796 1.19689 1.19374 0.97098 0.85259 1.45836 0.88947 1.43299 1.38968 1.05882 1.26547 1.21235 0.90988 1.05868 0.81845 1.21847 0.98072 1.05196 0.91260 1.23781 0.89113 0.71352 0.83180 1.90697 1.19439 1.45017 1.85103 1.84595 1.46190 1.85085 1.17703 1.19485 0.83585 0.84116 0.84215 1.90542 1.57145 1.34441 1.66668 1.22355 1.01055 0.94553 0.97325 0.85321 1.23014 0.97813 1.02021 0.94741 1.20958 0.87551 1.00984 1.03703 0.85728 1.19240 0.93150 0.97579 0.94451 1.21125 0.98340 0.98388 0.94264 1.21038 0.91420 0.98795 1.00253 1.21022 1.01035 1.00407 0.93202 1.17664 0.82072 1.02473 0.93198 1.91515 1.52927 1.86353 1.80262 1.17483 0.92526 1.01506 0.83249 1.91533 1.96211 1.81932 1.40571 0.91665 0.86385 0.91661 0.88373 0.87720 0.74138 0.87653 0.88119 0.83874 0.84270 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.60 11.35 55.50 0.63 -20.97 16 2 C 0.05 1.10 4.96 -17.47 -0.09 1.01 16 3 Si 0.91 18.44 29.61 -169.99 -5.03 13.41 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.35 -8.25 8.43 -14.93 -0.13 -8.37 16 8 H 0.09 2.08 6.71 -52.49 -0.35 1.73 16 9 N -0.43 -10.29 2.54 -114.81 -0.29 -10.59 16 10 C 0.12 2.94 4.26 -4.04 -0.02 2.92 16 11 C -0.12 -2.48 6.13 -27.89 -0.17 -2.65 16 12 C 0.48 8.96 8.33 36.01 0.30 9.26 16 13 O -0.51 -11.00 16.74 -18.75 -0.31 -11.32 16 14 O -0.52 -7.62 13.42 -39.24 -0.53 -8.15 16 15 C 0.50 11.53 7.38 -10.99 -0.08 11.45 16 16 O -0.60 -15.19 16.08 5.55 0.09 -15.10 16 17 C -0.13 -2.48 5.26 -91.78 -0.48 -2.97 16 18 H 0.13 2.38 6.30 -51.92 -0.33 2.06 16 19 C -0.14 -2.14 9.46 -26.70 -0.25 -2.39 16 20 C -0.11 -1.85 5.32 -91.73 -0.49 -2.33 16 21 H 0.12 2.26 7.64 -51.93 -0.40 1.86 16 22 C -0.04 -0.61 5.62 -104.57 -0.59 -1.20 16 23 C -0.10 -1.15 9.30 -39.58 -0.37 -1.52 16 24 C -0.10 -0.89 10.04 -39.58 -0.40 -1.29 16 25 C -0.14 -1.38 10.02 -39.53 -0.40 -1.78 16 26 C 0.07 0.86 7.31 -39.36 -0.29 0.57 16 27 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 28 C 0.07 1.08 7.25 -39.36 -0.29 0.79 16 29 F -0.12 -2.09 16.53 2.25 0.04 -2.05 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.12 3.01 5.34 -51.93 -0.28 2.73 16 32 H 0.06 1.64 7.46 -51.93 -0.39 1.25 16 33 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 34 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 35 H 0.40 3.85 9.10 45.56 0.41 4.27 16 36 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.10 1.22 6.18 -51.93 -0.32 0.90 16 38 H 0.14 1.37 6.02 -52.49 -0.32 1.05 16 39 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.59 357.43 -6.92 -37.51 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.21 Total: 12.14 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.73 Total: 1.51 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.34 Total: -31.56 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.75 Total: -34.57 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.59 -6.92 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.141 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds