Wall clock time and date at job start Tue Mar 31 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00342 * 2 1 4 4 H 1.48502 * 109.47271 * 240.00463 * 3 2 1 5 5 H 1.48507 * 109.46812 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47647 * 119.99736 * 3 2 1 7 7 C 1.38949 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00457 * 157.80001 * 7 2 1 9 9 N 1.37096 * 119.99919 * 337.80024 * 7 2 1 10 10 C 1.46502 * 120.00078 * 324.76113 * 9 7 2 11 11 C 1.52995 * 109.47243 * 269.72552 * 10 9 7 12 12 C 1.50699 * 109.47451 * 179.97438 * 11 10 9 13 13 O 1.20819 * 119.99860 * 0.02562 * 12 11 10 14 14 O 1.34225 * 119.99952 * 179.97438 * 12 11 10 15 15 C 1.34783 * 120.00112 * 144.48539 * 9 7 2 16 16 O 1.21290 * 119.99743 * 174.88609 * 15 9 7 17 17 C 1.50690 * 119.99949 * 354.88322 * 15 9 7 18 18 H 1.09009 * 115.55127 * 7.86838 * 17 15 9 19 19 C 1.52993 * 117.50239 * 222.19173 * 17 15 9 20 20 C 1.53003 * 117.50002 * 153.53317 * 17 15 9 21 21 H 1.08998 * 117.49662 * 359.97438 * 20 17 15 22 22 C 1.50702 * 117.50199 * 214.98326 * 20 17 15 23 23 C 1.38253 * 119.99696 * 299.99812 * 22 20 17 24 24 C 1.38219 * 120.06901 * 180.02562 * 23 22 20 25 25 C 1.38260 * 120.07108 * 359.97438 * 24 23 22 26 26 C 1.38367 * 119.99713 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.03524 * 180.02562 * 26 25 24 28 28 C 1.38370 * 119.99880 * 119.72415 * 22 20 17 29 29 F 1.35094 * 120.04042 * 359.97438 * 28 22 20 30 30 H 0.97000 * 120.00066 * 358.70134 * 1 2 3 31 31 H 1.09006 * 109.46843 * 29.72438 * 10 9 7 32 32 H 1.09003 * 109.47115 * 149.72426 * 10 9 7 33 33 H 1.09006 * 109.47108 * 299.99724 * 11 10 9 34 34 H 1.09000 * 109.47180 * 59.99385 * 11 10 9 35 35 H 0.96706 * 117.00069 * 180.02562 * 14 12 11 36 36 H 1.09005 * 117.50089 * 0.02562 * 19 17 15 37 37 H 1.09002 * 117.50289 * 145.02200 * 19 17 15 38 38 H 1.07999 * 119.96704 * 0.02562 * 23 22 20 39 39 H 1.07994 * 119.96484 * 180.02562 * 24 23 22 40 40 H 1.07993 * 120.00085 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0288 -1.2382 -0.3528 9 7 1.3996 -2.3464 0.4497 10 6 0.4494 -2.2812 1.5629 11 6 1.1972 -2.4738 2.8836 12 6 0.2200 -2.4061 4.0288 13 8 -0.9542 -2.2231 3.8109 14 8 0.6539 -2.5502 5.2908 15 6 1.6706 -3.5294 -0.1366 16 8 1.2045 -4.5526 0.3185 17 6 2.5525 -3.5809 -1.3573 18 1 3.0390 -2.6430 -1.6258 19 6 2.1270 -4.5077 -2.4978 20 6 3.3238 -4.8764 -1.6176 21 1 3.1935 -5.6913 -0.9056 22 6 4.6975 -4.7583 -2.2260 23 6 4.8562 -4.1648 -3.4645 24 6 6.1154 -4.0562 -4.0241 25 6 7.2189 -4.5403 -3.3462 26 6 7.0633 -5.1348 -2.1065 27 9 8.1411 -5.6076 -1.4432 28 6 5.8005 -5.2387 -1.5424 29 9 5.6469 -5.8133 -0.3294 30 1 -0.4850 0.8398 0.0190 31 1 -0.0438 -1.3091 1.5630 32 1 -0.2971 -3.0674 1.4499 33 1 1.6905 -3.4459 2.8835 34 1 1.9438 -1.6877 2.9965 35 1 -0.0102 -2.4996 5.9919 36 1 1.2088 -5.0800 -2.3653 37 1 2.3337 -4.1799 -3.5166 38 1 3.9955 -3.7857 -3.9953 39 1 6.2375 -3.5919 -4.9914 40 1 8.2022 -4.4551 -3.7847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:35 Heat of formation + Delta-G solvation = -179.230634 kcal Electronic energy + Delta-G solvation = -29072.955959 eV Core-core repulsion = 24489.060789 eV Total energy + Delta-G solvation = -4583.895170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.49039 -49.58095 -41.42949 -40.98318 -39.91683 -37.70996 -37.12063 -36.55039 -33.82235 -32.49107 -31.60743 -31.19398 -27.17209 -26.68671 -25.32329 -24.07866 -23.50082 -21.98590 -21.69078 -20.89176 -19.28509 -19.06632 -18.78543 -18.16371 -17.96048 -17.65656 -17.56417 -17.33027 -17.02276 -16.34965 -16.22997 -16.00228 -15.95648 -15.50175 -15.47865 -15.20000 -14.82493 -14.35938 -14.16929 -14.04445 -13.71910 -13.43508 -13.33039 -13.26400 -12.97561 -12.84603 -12.60405 -12.56664 -12.48921 -12.18031 -12.10735 -11.98745 -11.70833 -11.59746 -11.39683 -11.05936 -10.48077 -9.73375 -9.70406 -9.54802 -8.30434 -6.08089 -0.04512 -0.02815 1.14378 1.43112 1.51682 1.59966 1.75983 2.00413 2.32541 2.40788 2.71408 2.94176 2.97983 3.19039 3.36214 3.52864 3.76596 3.88270 3.95983 3.97234 4.05039 4.10099 4.19918 4.26474 4.43396 4.50300 4.69732 4.76475 4.83423 4.88878 4.94897 5.01111 5.04938 5.17795 5.26575 5.32601 5.39220 5.47971 5.55600 5.80597 5.91927 6.37545 6.96438 7.10837 7.52312 7.95540 8.70840 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.003566 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.089516 B = 7850.161931 C = 8909.037584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.007 3.993 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.356 4.356 8 H 0.105 0.895 9 N -0.442 5.442 10 C 0.129 3.871 11 C -0.117 4.117 12 C 0.496 3.504 13 O -0.548 6.548 14 O -0.507 6.507 15 C 0.482 3.518 16 O -0.635 6.635 17 C -0.155 4.155 18 H 0.135 0.865 19 C -0.117 4.117 20 C -0.099 4.099 21 H 0.094 0.906 22 C -0.060 4.060 23 C -0.098 4.098 24 C -0.078 4.078 25 C -0.122 4.122 26 C 0.050 3.950 27 F -0.142 7.142 28 C 0.038 3.962 29 F -0.149 7.149 30 H 0.272 0.728 31 H 0.100 0.900 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.427 0.573 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 -2.813 -7.264 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.483 4.483 8 H 0.122 0.878 9 N -0.158 5.158 10 C 0.004 3.996 11 C -0.156 4.156 12 C 0.339 3.661 13 O -0.438 6.438 14 O -0.321 6.321 15 C 0.273 3.727 16 O -0.524 6.524 17 C -0.176 4.176 18 H 0.152 0.848 19 C -0.154 4.154 20 C -0.118 4.118 21 H 0.112 0.888 22 C -0.061 4.061 23 C -0.115 4.115 24 C -0.095 4.095 25 C -0.140 4.140 26 C 0.030 3.970 27 F -0.121 7.121 28 C 0.019 3.981 29 F -0.128 7.128 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.289 0.711 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.203 0.797 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 11.996 -3.153 -7.320 14.402 hybrid contribution -0.498 0.356 1.639 1.750 sum 11.497 -2.797 -5.680 13.126 Atomic orbital electron populations 1.70042 1.07938 1.28985 1.45313 1.26195 0.95505 1.02917 0.95060 0.85230 0.78094 0.76797 0.79836 1.17923 1.21350 1.19332 1.19708 0.97524 0.85258 1.45811 0.87794 1.43535 1.38894 1.06473 1.26912 1.21009 0.91096 1.03509 0.83963 1.21612 0.98076 1.05489 0.90444 1.23324 0.87994 0.70650 0.84120 1.90695 1.20580 1.46726 1.85839 1.84508 1.46778 1.84034 1.16745 1.20299 0.83787 0.83430 0.85191 1.90502 1.58635 1.35381 1.67864 1.22229 1.02352 0.96123 0.96898 0.84767 1.23185 0.96881 0.99492 0.95800 1.20743 0.89606 0.98209 1.03273 0.88752 1.19144 0.91282 0.99744 0.95963 1.21444 1.00276 0.97019 0.92799 1.21548 0.89853 0.96812 1.01319 1.21494 1.03099 0.98002 0.91397 1.17964 0.81102 1.03537 0.94412 1.91486 1.53123 1.86681 1.80761 1.17909 0.94005 1.03191 0.83045 1.91459 1.96440 1.82654 1.42199 0.91794 0.88254 0.94643 0.88452 0.86617 0.71105 0.89074 0.83749 0.81753 0.79742 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.12 11.35 21.66 0.25 -45.88 16 2 C 0.01 0.35 4.96 84.93 0.42 0.77 16 3 Si 0.98 37.12 29.61 68.60 2.03 39.15 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.36 -16.98 8.43 84.04 0.71 -16.27 16 8 H 0.10 4.62 6.71 -2.91 -0.02 4.60 16 9 N -0.44 -21.90 2.54 -635.54 -1.61 -23.52 16 10 C 0.13 6.37 4.26 86.38 0.37 6.74 16 11 C -0.12 -4.80 6.13 29.85 0.18 -4.62 16 12 C 0.50 18.52 8.33 71.24 0.59 19.11 16 13 O -0.55 -24.00 16.74 21.98 0.37 -23.63 16 14 O -0.51 -14.01 13.42 -51.37 -0.69 -14.70 16 15 C 0.48 23.34 7.38 87.65 0.65 23.99 16 16 O -0.64 -34.00 16.08 -3.06 -0.05 -34.05 16 17 C -0.16 -5.90 5.26 -11.54 -0.06 -5.96 16 18 H 0.13 4.88 6.30 -2.38 -0.02 4.86 16 19 C -0.12 -3.49 9.46 30.61 0.29 -3.20 16 20 C -0.10 -3.29 5.32 -11.52 -0.06 -3.35 16 21 H 0.09 3.67 7.64 -2.39 -0.02 3.65 16 22 C -0.06 -1.64 5.62 -19.83 -0.11 -1.75 16 23 C -0.10 -1.80 9.30 22.27 0.21 -1.59 16 24 C -0.08 -1.01 10.04 22.27 0.22 -0.78 16 25 C -0.12 -1.92 10.02 22.31 0.22 -1.70 16 26 C 0.05 1.22 7.31 22.41 0.16 1.39 16 27 F -0.14 -3.81 17.18 44.97 0.77 -3.04 16 28 C 0.04 1.15 7.25 22.41 0.16 1.31 16 29 F -0.15 -5.31 16.53 44.97 0.74 -4.57 16 30 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 31 H 0.10 5.32 5.34 -2.38 -0.01 5.31 16 32 H 0.03 1.91 7.46 -2.39 -0.02 1.89 16 33 H 0.10 3.98 8.14 -2.38 -0.02 3.96 16 34 H 0.12 4.44 8.14 -2.39 -0.02 4.42 16 35 H 0.43 7.31 9.10 -74.05 -0.67 6.64 16 36 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.14 2.99 6.18 -2.39 -0.01 2.97 16 38 H 0.17 2.29 6.02 -2.91 -0.02 2.27 16 39 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -71.68 357.43 6.22 -65.45 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.46 Total: 30.69 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 3.96 Total: 14.09 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.37 Total: -69.39 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: -0.37 Total: -72.38 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.52 Total: -7.60 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -71.68 6.22 -65.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.778 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds