Wall clock time and date at job start Tue Mar 31 2020 22:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00056 * 3 2 1 5 5 H 1.48498 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00129 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36490 * 126.06493 * 179.72506 * 9 7 2 11 11 C 1.35695 * 107.50771 * 179.97438 * 10 9 7 12 12 N 1.40525 * 126.08817 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99597 * 180.02562 * 12 11 10 14 14 O 1.21581 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.47838 * 119.99250 * 179.97438 * 13 12 11 16 16 C 1.39622 * 120.11923 * 359.72543 * 15 13 12 17 17 C 1.37971 * 119.98505 * 179.76070 * 16 15 13 18 18 C 1.38268 * 120.21452 * 0.49476 * 17 16 15 19 19 C 1.38901 * 120.23355 * 359.75909 * 18 17 16 20 20 N 1.40254 * 119.99714 * 179.97438 * 19 18 17 21 21 C 1.37699 * 126.51313 * 129.70952 * 20 19 18 22 22 C 1.34433 * 106.90268 * 179.84086 * 21 20 19 23 23 N 1.34376 * 108.32538 * 0.42502 * 22 21 20 24 24 C 1.31016 * 109.35999 * 359.73240 * 23 22 21 25 25 O 1.35501 * 125.78588 * 180.02562 * 24 23 22 26 26 C 1.38582 * 120.01302 * 0.02562 * 19 18 17 27 27 C 1.40672 * 107.82644 * 359.97438 * 11 10 9 28 28 N 1.30899 * 108.38628 * 359.75560 * 27 11 10 29 29 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24724 * 359.95962 * 10 9 7 31 31 H 0.96997 * 119.99972 * 359.97438 * 12 11 10 32 32 H 1.08002 * 120.00697 * 359.97438 * 16 15 13 33 33 H 1.07995 * 119.89250 * 180.22783 * 17 16 15 34 34 H 1.08000 * 119.88539 * 179.74416 * 18 17 16 35 35 H 1.07995 * 126.55191 * 0.02562 * 21 20 19 36 36 H 1.08001 * 125.83380 * 180.11814 * 22 21 20 37 37 H 0.96708 * 113.99331 * 269.95416 * 25 24 23 38 38 H 1.08000 * 120.11000 * 179.97438 * 26 19 18 39 39 H 1.08005 * 125.80572 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.1007 1.6964 -1.2125 5 1 1.2820 2.7465 0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6404 -0.0134 11 6 0.8578 -4.5385 -0.0175 12 7 0.9889 -5.9376 -0.0252 13 6 -0.1104 -6.7174 -0.0292 14 8 -1.2154 -6.2104 -0.0257 15 6 0.0276 -8.1893 -0.0378 16 6 1.2954 -8.7740 -0.0476 17 6 1.4211 -10.1480 -0.0507 18 6 0.2946 -10.9497 -0.0544 19 6 -0.9711 -10.3775 -0.0500 20 7 -2.1105 -11.1955 -0.0543 21 6 -3.1878 -11.1042 0.7984 22 6 -4.0502 -12.0724 0.4436 23 7 -3.5226 -12.7503 -0.5898 24 6 -2.3586 -12.2344 -0.8986 25 8 -1.5405 -12.6619 -1.8907 26 6 -1.1084 -8.9985 -0.0424 27 6 -0.3514 -3.8197 -0.0128 28 7 -0.0715 -2.5410 -0.0008 29 1 -0.4850 0.8401 0.0004 30 1 2.9302 -3.8707 -0.0152 31 1 1.8705 -6.3421 -0.0284 32 1 2.1776 -8.1510 -0.0494 33 1 2.4025 -10.5987 -0.0546 34 1 0.3991 -12.0246 -0.0609 35 1 -3.3168 -10.3892 1.5975 36 1 -5.0020 -12.2744 0.9125 37 1 -0.9077 -13.3389 -1.6142 38 1 -2.0917 -8.5520 -0.0394 39 1 -1.3421 -4.2497 -0.0149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:42 Heat of formation + Delta-G solvation = 120.159182 kcal Electronic energy + Delta-G solvation = -27076.145773 eV Core-core repulsion = 22988.215057 eV Total energy + Delta-G solvation = -4087.930716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59548 -40.36037 -39.45644 -38.13885 -37.64470 -34.64124 -34.24652 -33.22814 -31.61843 -30.32557 -29.94496 -28.97916 -27.79347 -25.23268 -24.13689 -23.61619 -21.96767 -21.45410 -21.16712 -20.68768 -19.58740 -19.01680 -17.86552 -17.49879 -16.83728 -16.30155 -16.11557 -15.67800 -15.49036 -15.00776 -14.87391 -14.75425 -14.58015 -14.12649 -13.89774 -13.88460 -13.56657 -13.35606 -12.98085 -12.85980 -12.46434 -12.11810 -11.84644 -11.72698 -11.50324 -11.29191 -11.03065 -10.72885 -10.60070 -10.37595 -10.28680 -9.43577 -9.42524 -9.23247 -9.13125 -8.88297 -8.71064 -8.13252 -6.78993 -6.61367 -4.28949 0.37361 0.70437 1.58096 2.03054 2.64103 2.67212 2.95167 3.00959 3.05634 3.36357 3.40980 3.49080 3.74109 3.81275 4.34532 4.36840 4.37560 4.44248 4.62063 4.70213 4.86717 4.90901 4.96650 5.06772 5.18952 5.25539 5.38966 5.57045 5.82058 5.88921 5.89567 6.10111 6.17171 6.23361 6.38138 6.50081 6.80318 6.87546 7.00796 7.16024 7.27818 7.57214 7.78781 8.04238 8.18565 8.52545 8.71598 9.30389 9.59411 10.34358 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.002003 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.887321 B =13975.274947 C =14653.110285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.083 4.083 11 C -0.064 4.064 12 N -0.611 5.611 13 C 0.536 3.464 14 O -0.528 6.528 15 C -0.095 4.095 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.097 4.097 19 C 0.108 3.892 20 N -0.417 5.417 21 C -0.034 4.034 22 C -0.013 4.013 23 N -0.479 5.479 24 C 0.380 3.620 25 O -0.437 6.437 26 C -0.057 4.057 27 C -0.029 4.029 28 N -0.260 5.260 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.396 0.604 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.128 0.872 35 H 0.185 0.815 36 H 0.182 0.818 37 H 0.398 0.602 38 H 0.146 0.854 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -21.802 2.147 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.234 4.234 11 C -0.170 4.170 12 N -0.253 5.253 13 C 0.322 3.678 14 O -0.406 6.406 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.117 4.117 19 C 0.017 3.983 20 N -0.110 5.110 21 C -0.163 4.163 22 C -0.159 4.159 23 N -0.207 5.207 24 C 0.082 3.918 25 O -0.237 6.237 26 C -0.077 4.077 27 C -0.205 4.205 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.231 0.769 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.145 0.855 35 H 0.202 0.798 36 H 0.199 0.801 37 H 0.255 0.745 38 H 0.164 0.836 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.725 -20.321 1.316 20.437 hybrid contribution 2.023 -0.062 0.575 2.104 sum 3.748 -20.383 1.891 20.811 Atomic orbital electron populations 1.70203 1.06158 1.28240 1.34811 1.25662 0.95729 1.00344 0.95436 0.85880 0.79153 0.79534 0.79505 1.19116 1.20089 1.19117 1.19851 0.91677 0.80520 1.53446 0.86565 1.44569 1.04088 1.03327 1.38690 1.21245 0.96812 0.85344 1.20024 1.17229 0.94456 0.80852 1.24427 1.42362 1.07963 1.04759 1.70194 1.17872 0.84807 0.85441 0.79639 1.90696 1.25539 1.74223 1.50169 1.19969 0.93304 0.93873 1.02804 1.21521 0.96765 0.95376 0.96693 1.20964 0.98482 0.93097 0.99835 1.21048 0.90650 1.00298 0.99672 1.17554 0.85281 0.89630 1.05853 1.43582 1.15594 1.26034 1.25766 1.22858 0.89076 1.05287 0.99105 1.22237 1.01210 0.96008 0.96476 1.70567 1.06554 1.27886 1.15730 1.20525 0.91335 0.89750 0.90223 1.84944 1.49640 1.60084 1.29014 1.21163 1.00241 0.90520 0.95782 1.24138 0.98042 0.90743 1.07569 1.78277 0.90067 1.15019 1.25752 0.91298 0.83603 0.76928 0.84580 0.84215 0.85456 0.79758 0.80137 0.74526 0.83602 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.18 11.81 55.50 0.66 -20.53 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.55 29.55 -169.99 -5.02 13.52 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.35 10.25 -14.81 -0.15 -8.50 16 8 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 9 N -0.14 -3.76 3.74 -11.41 -0.04 -3.80 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 11 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 12 N -0.61 -10.36 5.41 -10.85 -0.06 -10.42 16 13 C 0.54 9.16 7.74 -12.33 -0.10 9.06 16 14 O -0.53 -11.11 13.49 5.29 0.07 -11.04 16 15 C -0.10 -1.20 5.87 -104.99 -0.62 -1.82 16 16 C -0.08 -0.76 9.54 -39.16 -0.37 -1.13 16 17 C -0.11 -0.74 10.02 -39.67 -0.40 -1.13 16 18 C -0.10 -0.76 9.39 -39.33 -0.37 -1.13 16 19 C 0.11 1.12 5.98 -83.63 -0.50 0.62 16 20 N -0.42 -4.47 2.90 -62.23 -0.18 -4.65 16 21 C -0.03 -0.32 11.32 -16.26 -0.18 -0.51 16 22 C -0.01 -0.13 11.84 -17.78 -0.21 -0.34 16 23 N -0.48 -5.94 11.27 -14.65 -0.17 -6.11 16 24 C 0.38 4.34 8.86 -88.92 -0.79 3.55 16 25 O -0.44 -4.07 13.23 -18.19 -0.24 -4.31 16 26 C -0.06 -0.70 9.25 -38.99 -0.36 -1.06 16 27 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 28 N -0.26 -7.47 10.39 30.80 0.32 -7.15 16 29 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.15 2.71 8.06 -52.48 -0.42 2.29 16 31 H 0.40 4.96 6.85 -40.82 -0.28 4.68 16 32 H 0.14 0.91 6.40 -52.49 -0.34 0.58 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.40 1.46 9.06 45.56 0.41 1.87 16 38 H 0.15 1.96 7.65 -52.49 -0.40 1.55 16 39 H 0.18 4.51 5.92 -52.48 -0.31 4.20 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -36.81 350.23 -7.06 -43.87 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.57 Total: 11.68 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -5.09 Total: -6.35 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.53 Total: -52.65 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.17 Total: -15.35 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.81 -7.06 -43.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.025 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds