Wall clock time and date at job start Tue Mar 31 2020 22:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86805 * 120.00272 * 2 1 4 4 H 1.48498 * 109.47196 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.46701 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47063 * 119.99861 * 3 2 1 7 7 C 1.38996 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37316 * 119.99275 * 0.02562 * 7 2 1 10 10 C 1.36502 * 126.06366 * 180.26011 * 9 7 2 11 11 C 1.35690 * 107.50480 * 180.14927 * 10 9 7 12 12 N 1.40543 * 126.08424 * 179.87574 * 11 10 9 13 13 C 1.34778 * 119.99747 * 179.71162 * 12 11 10 14 14 O 1.21609 * 120.00585 * 359.97438 * 13 12 11 15 15 C 1.47535 * 119.99621 * 180.02562 * 13 12 11 16 16 C 1.39669 * 120.16214 * 359.97438 * 15 13 12 17 17 C 1.38343 * 119.83994 * 180.02562 * 16 15 13 18 18 N 1.40386 * 119.91513 * 179.97438 * 17 16 15 19 19 C 1.37075 * 126.46773 * 180.02562 * 18 17 16 20 20 C 1.34670 * 106.83750 * 180.02562 * 19 18 17 21 21 N 1.34116 * 108.18569 * 359.97438 * 20 19 18 22 22 C 1.30537 * 109.34356 * 0.02562 * 21 20 19 23 23 C 1.39075 * 120.16867 * 0.27208 * 17 16 15 24 24 C 1.37990 * 120.32306 * 359.45098 * 23 17 16 25 25 C 1.38693 * 120.16139 * 0.54843 * 24 23 17 26 26 O 1.35708 * 120.09019 * 179.70294 * 25 24 23 27 27 C 1.40665 * 107.83352 * 359.60716 * 11 10 9 28 28 N 1.30906 * 108.38566 * 0.24716 * 27 11 10 29 29 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08004 * 126.24790 * 0.03128 * 10 9 7 31 31 H 0.96995 * 120.00106 * 359.71189 * 12 11 10 32 32 H 1.07997 * 120.07882 * 0.04175 * 16 15 13 33 33 H 1.08001 * 126.58207 * 359.74886 * 19 18 17 34 34 H 1.07999 * 125.90988 * 179.97438 * 20 19 18 35 35 H 1.07993 * 125.71560 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.83580 * 179.70293 * 23 17 16 37 37 H 1.08002 * 119.91761 * 180.27590 * 24 23 17 38 38 H 0.96697 * 113.99855 * 270.02584 * 26 25 24 39 39 H 1.07995 * 125.80712 * 180.26611 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6964 -1.2124 5 1 1.2820 2.7464 -0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3928 0.0005 10 6 1.8749 -3.6405 0.0060 11 6 0.8576 -4.5385 0.0005 12 7 0.9887 -5.9378 0.0009 13 6 -0.1106 -6.7176 0.0009 14 8 -1.2159 -6.2104 0.0009 15 6 0.0270 -8.1865 0.0019 16 6 1.2948 -8.7725 0.0024 17 6 1.4161 -10.1506 0.0028 18 7 2.6896 -10.7414 0.0028 19 6 2.9648 -12.0842 0.0026 20 6 4.3059 -12.2075 0.0032 21 7 4.8394 -10.9771 0.0031 22 6 3.8814 -10.0904 0.0030 23 6 0.2797 -10.9523 -0.0030 24 6 -0.9762 -10.3806 0.0023 25 6 -1.1136 -9.0005 0.0019 26 8 -2.3495 -8.4398 0.0009 27 6 -0.3515 -3.8197 0.0006 28 7 -0.0717 -2.5409 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 2.9300 -3.8709 0.0116 31 1 1.8702 -6.3423 0.0013 32 1 2.1782 -8.1514 0.0027 33 1 2.2445 -12.8889 0.0064 34 1 4.8565 -13.1366 0.0037 35 1 4.0142 -9.0187 0.0033 36 1 0.3806 -12.0276 -0.0075 37 1 -1.8543 -11.0094 0.0022 38 1 -2.7072 -8.2779 -0.8827 39 1 -1.3422 -4.2497 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626936026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:39 Heat of formation + Delta-G solvation = 116.047329 kcal Electronic energy + Delta-G solvation = -27458.751598 eV Core-core repulsion = 23370.642579 eV Total energy + Delta-G solvation = -4088.109020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64653 -40.57505 -39.61033 -38.15931 -37.20652 -34.31369 -33.79695 -33.27031 -31.89107 -30.28702 -29.91496 -28.80504 -27.78058 -25.21266 -24.28143 -23.69526 -21.96574 -21.11582 -21.01942 -20.43781 -19.46187 -18.84873 -18.54725 -17.56004 -16.51110 -16.18379 -15.96477 -15.65553 -15.48761 -15.07342 -14.99073 -14.64411 -14.43802 -14.14968 -14.10301 -13.83146 -13.51141 -13.26799 -13.00635 -12.94341 -12.69586 -12.46466 -11.71522 -11.48489 -11.27464 -11.05374 -10.86270 -10.78512 -10.58347 -10.41350 -10.24673 -9.56701 -9.31385 -9.20849 -9.03393 -8.85990 -8.52157 -8.10904 -6.76097 -6.59522 -4.26725 0.28921 0.52088 1.81207 2.25404 2.72201 2.83285 2.97315 3.02726 3.07069 3.36291 3.40193 3.72325 3.82555 3.91050 4.13504 4.18883 4.33315 4.39797 4.44099 4.64192 4.70868 4.94516 4.98610 5.02776 5.16532 5.17747 5.28608 5.42775 5.50665 5.85129 5.98406 6.03358 6.19312 6.35999 6.39708 6.82603 6.84835 6.89930 7.03348 7.18301 7.51549 7.65768 7.81080 8.06746 8.21062 8.55858 8.74801 9.32615 9.61777 10.36257 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.002528 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.748919 B =11071.822671 C =12876.164261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.084 4.084 11 C -0.062 4.062 12 N -0.615 5.615 13 C 0.537 3.463 14 O -0.511 6.511 15 C -0.119 4.119 16 C -0.090 4.090 17 C 0.114 3.886 18 N -0.408 5.408 19 C -0.056 4.056 20 C -0.023 4.023 21 N -0.485 5.485 22 C 0.190 3.810 23 C -0.098 4.098 24 C -0.128 4.128 25 C 0.164 3.836 26 O -0.471 6.471 27 C -0.029 4.029 28 N -0.260 5.260 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.393 0.607 32 H 0.139 0.861 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.210 0.790 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.399 0.601 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 -22.086 -1.693 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.257 5.257 13 C 0.323 3.677 14 O -0.388 6.388 15 C -0.124 4.124 16 C -0.110 4.110 17 C 0.022 3.978 18 N -0.087 5.087 19 C -0.186 4.186 20 C -0.169 4.169 21 N -0.201 5.201 22 C -0.091 4.091 23 C -0.118 4.118 24 C -0.147 4.147 25 C 0.116 3.884 26 O -0.283 6.283 27 C -0.205 4.205 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.227 0.773 32 H 0.156 0.844 33 H 0.195 0.805 34 H 0.191 0.809 35 H 0.227 0.773 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.258 0.742 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.987 -20.173 -1.097 20.300 hybrid contribution 0.466 -0.632 -0.445 0.903 sum 2.454 -20.805 -1.542 21.006 Atomic orbital electron populations 1.70201 1.06152 1.28202 1.34922 1.25654 0.95719 1.00318 0.95435 0.85886 0.79157 0.79553 0.79521 1.19121 1.20104 1.19111 1.19850 0.91682 0.80534 1.53422 0.86579 1.44561 1.04080 1.03308 1.38757 1.21253 0.96827 0.85365 1.20041 1.17222 0.94452 0.80822 1.24288 1.42402 1.07856 1.04785 1.70690 1.17648 0.84943 0.85012 0.80105 1.90726 1.25118 1.73805 1.49116 1.20431 0.92709 0.94642 1.04572 1.20882 0.97626 0.92285 1.00249 1.17613 0.83192 0.92121 1.04898 1.43230 1.05422 1.06975 1.53069 1.22758 0.98794 0.84957 1.12118 1.22382 0.91141 0.96449 1.06949 1.70364 1.31064 0.99959 1.18755 1.25358 0.78615 1.00214 1.04923 1.20819 0.90406 1.00035 1.00515 1.21307 0.97688 0.94020 1.01665 1.18494 0.84889 0.89706 0.95270 1.84780 1.27507 1.82327 1.33641 1.24134 0.98021 0.90714 1.07625 1.78275 0.90066 1.15041 1.25760 0.91330 0.83642 0.77275 0.84377 0.80503 0.80854 0.77337 0.84450 0.83639 0.74246 0.80622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.26 11.81 55.50 0.66 -20.60 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.70 29.55 -169.99 -5.02 13.67 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.32 -8.41 10.25 -14.81 -0.15 -8.56 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 9 N -0.14 -3.78 3.74 -11.40 -0.04 -3.82 16 10 C -0.08 -1.92 11.49 -16.38 -0.19 -2.11 16 11 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 12 N -0.61 -10.51 5.41 -10.94 -0.06 -10.57 16 13 C 0.54 9.12 7.73 -12.47 -0.10 9.02 16 14 O -0.51 -10.47 12.30 -16.65 -0.20 -10.67 16 15 C -0.12 -1.49 5.88 -104.86 -0.62 -2.11 16 16 C -0.09 -0.89 8.95 -39.01 -0.35 -1.24 16 17 C 0.11 1.03 6.63 -83.59 -0.55 0.47 16 18 N -0.41 -3.72 2.99 -62.13 -0.19 -3.91 16 19 C -0.06 -0.44 10.85 -16.47 -0.18 -0.62 16 20 C -0.02 -0.21 11.86 -17.82 -0.21 -0.42 16 21 N -0.48 -5.57 11.25 -14.48 -0.16 -5.74 16 22 C 0.19 1.86 11.91 -89.66 -1.07 0.79 16 23 C -0.10 -0.73 9.46 -39.36 -0.37 -1.10 16 24 C -0.13 -1.03 9.97 -39.50 -0.39 -1.42 16 25 C 0.16 1.85 6.72 -38.70 -0.26 1.59 16 26 O -0.47 -5.75 11.56 -40.75 -0.47 -6.22 16 27 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 28 N -0.26 -7.47 10.40 30.80 0.32 -7.15 16 29 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 2.75 8.06 -52.48 -0.42 2.33 16 31 H 0.39 5.07 6.85 -40.82 -0.28 4.80 16 32 H 0.14 1.10 5.10 -52.49 -0.27 0.84 16 33 H 0.18 0.80 7.14 -52.49 -0.37 0.43 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.21 1.44 7.05 -52.49 -0.37 1.07 16 36 H 0.14 0.66 6.79 -52.49 -0.36 0.30 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.40 3.36 9.06 45.56 0.41 3.77 16 39 H 0.18 4.49 5.91 -52.49 -0.31 4.18 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -36.61 343.50 -7.66 -44.27 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -2.36 Total: 13.13 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -5.30 Total: -7.55 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.53 Total: -51.79 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.68 Total: -16.90 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.61 -7.66 -44.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626936026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.313 kcal (2) G-P(sol) polarization free energy of solvation -36.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds