Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86805 * 120.00272 * 2 1 4 4 H 1.48498 * 109.47196 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.46701 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47063 * 119.99861 * 3 2 1 7 7 C 1.38996 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.37316 * 119.99275 * 0.02562 * 7 2 1 10 10 C 1.36502 * 126.06366 * 180.26011 * 9 7 2 11 11 C 1.35690 * 107.50480 * 180.14927 * 10 9 7 12 12 N 1.40543 * 126.08424 * 179.87574 * 11 10 9 13 13 C 1.34778 * 119.99747 * 179.71162 * 12 11 10 14 14 O 1.21609 * 120.00585 * 359.97438 * 13 12 11 15 15 C 1.47535 * 119.99621 * 180.02562 * 13 12 11 16 16 C 1.39669 * 120.16214 * 359.97438 * 15 13 12 17 17 C 1.38343 * 119.83994 * 180.02562 * 16 15 13 18 18 N 1.40386 * 119.91513 * 179.97438 * 17 16 15 19 19 C 1.37075 * 126.46773 * 180.02562 * 18 17 16 20 20 C 1.34670 * 106.83750 * 180.02562 * 19 18 17 21 21 N 1.34116 * 108.18569 * 359.97438 * 20 19 18 22 22 C 1.30537 * 109.34356 * 0.02562 * 21 20 19 23 23 C 1.39075 * 120.16867 * 0.27208 * 17 16 15 24 24 C 1.37990 * 120.32306 * 359.45098 * 23 17 16 25 25 C 1.38693 * 120.16139 * 0.54843 * 24 23 17 26 26 O 1.35708 * 120.09019 * 179.70294 * 25 24 23 27 27 C 1.40665 * 107.83352 * 359.60716 * 11 10 9 28 28 N 1.30906 * 108.38566 * 0.24716 * 27 11 10 29 29 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08004 * 126.24790 * 0.03128 * 10 9 7 31 31 H 0.96995 * 120.00106 * 359.71189 * 12 11 10 32 32 H 1.07997 * 120.07882 * 0.04175 * 16 15 13 33 33 H 1.08001 * 126.58207 * 359.74886 * 19 18 17 34 34 H 1.07999 * 125.90988 * 179.97438 * 20 19 18 35 35 H 1.07993 * 125.71560 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.83580 * 179.70293 * 23 17 16 37 37 H 1.08002 * 119.91761 * 180.27590 * 24 23 17 38 38 H 0.96697 * 113.99855 * 270.02584 * 26 25 24 39 39 H 1.07995 * 125.80712 * 180.26611 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6964 -1.2124 5 1 1.2820 2.7464 -0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3928 0.0005 10 6 1.8749 -3.6405 0.0060 11 6 0.8576 -4.5385 0.0005 12 7 0.9887 -5.9378 0.0009 13 6 -0.1106 -6.7176 0.0009 14 8 -1.2159 -6.2104 0.0009 15 6 0.0270 -8.1865 0.0019 16 6 1.2948 -8.7725 0.0024 17 6 1.4161 -10.1506 0.0028 18 7 2.6896 -10.7414 0.0028 19 6 2.9648 -12.0842 0.0026 20 6 4.3059 -12.2075 0.0032 21 7 4.8394 -10.9771 0.0031 22 6 3.8814 -10.0904 0.0030 23 6 0.2797 -10.9523 -0.0030 24 6 -0.9762 -10.3806 0.0023 25 6 -1.1136 -9.0005 0.0019 26 8 -2.3495 -8.4398 0.0009 27 6 -0.3515 -3.8197 0.0006 28 7 -0.0717 -2.5409 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 2.9300 -3.8709 0.0116 31 1 1.8702 -6.3423 0.0013 32 1 2.1782 -8.1514 0.0027 33 1 2.2445 -12.8889 0.0064 34 1 4.8565 -13.1366 0.0037 35 1 4.0142 -9.0187 0.0033 36 1 0.3806 -12.0276 -0.0075 37 1 -1.8543 -11.0094 0.0022 38 1 -2.7072 -8.2779 -0.8827 39 1 -1.3422 -4.2497 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626936026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = 91.234638 kcal Electronic energy + Delta-G solvation = -27459.827557 eV Core-core repulsion = 23370.642579 eV Total energy + Delta-G solvation = -4089.184979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.30249 -41.87461 -41.08054 -39.48059 -38.03216 -35.93432 -35.06988 -34.48485 -32.83491 -32.14958 -30.65357 -29.56305 -29.46303 -26.93705 -25.33744 -24.46575 -23.07741 -22.68242 -21.82162 -21.52528 -21.11239 -19.81953 -19.39623 -19.19498 -17.70037 -17.39784 -17.23015 -16.76961 -16.39700 -16.33874 -16.06873 -15.89185 -15.57955 -15.19246 -15.03860 -14.89454 -14.77169 -14.66713 -14.36882 -13.86469 -13.49314 -13.47442 -13.31777 -13.15395 -12.87753 -12.87704 -12.14147 -11.87270 -11.78783 -11.52797 -11.10219 -11.01429 -10.84312 -10.70084 -10.32598 -10.10615 -9.68334 -9.23808 -8.54224 -8.47355 -6.24610 -0.49508 -0.20973 1.11311 1.29371 1.39785 1.56110 1.59457 1.64697 1.90100 2.00180 2.13880 2.23872 2.39099 2.71182 2.88138 3.08927 3.15453 3.41495 3.50274 3.77431 3.82623 3.98815 4.04057 4.28719 4.42638 4.52934 4.54194 4.55696 4.65880 4.79636 4.84473 4.98939 5.02656 5.18240 5.28276 5.31407 5.38471 5.41817 5.76420 5.94910 6.19749 6.30054 6.66338 6.72935 6.78074 7.01158 7.31002 7.45350 7.67042 8.51811 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.002528 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.748919 B =11071.822671 C =12876.164261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.167 5.167 10 C -0.080 4.080 11 C -0.045 4.045 12 N -0.611 5.611 13 C 0.538 3.462 14 O -0.552 6.552 15 C -0.145 4.145 16 C -0.083 4.083 17 C 0.110 3.890 18 N -0.411 5.411 19 C -0.047 4.047 20 C -0.046 4.046 21 N -0.522 5.522 22 C 0.174 3.826 23 C -0.076 4.076 24 C -0.117 4.117 25 C 0.153 3.847 26 O -0.494 6.494 27 C -0.057 4.057 28 N -0.310 5.310 29 H 0.277 0.723 30 H 0.189 0.811 31 H 0.415 0.585 32 H 0.152 0.848 33 H 0.215 0.785 34 H 0.192 0.808 35 H 0.227 0.773 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.410 0.590 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -24.976 -1.744 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.064 4.936 10 C -0.230 4.230 11 C -0.151 4.151 12 N -0.256 5.256 13 C 0.327 3.673 14 O -0.431 6.431 15 C -0.149 4.149 16 C -0.104 4.104 17 C 0.018 3.982 18 N -0.090 5.090 19 C -0.177 4.177 20 C -0.192 4.192 21 N -0.239 5.239 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.136 4.136 25 C 0.105 3.895 26 O -0.307 6.307 27 C -0.232 4.232 28 N -0.142 5.142 29 H 0.086 0.914 30 H 0.206 0.794 31 H 0.253 0.747 32 H 0.170 0.830 33 H 0.232 0.768 34 H 0.209 0.791 35 H 0.243 0.757 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.271 0.729 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.840 -23.135 -1.155 23.480 hybrid contribution -0.110 -0.066 -0.437 0.455 sum 3.730 -23.201 -1.592 23.553 Atomic orbital electron populations 1.70388 1.08419 1.29186 1.37229 1.26883 0.96470 1.04347 0.94128 0.84658 0.77554 0.73754 0.80284 1.17686 1.20335 1.17751 1.20589 0.92983 0.80883 1.54059 0.84121 1.44838 1.03640 1.04801 1.40286 1.22002 0.98826 0.84189 1.18026 1.17280 0.92936 0.83316 1.21582 1.42324 1.09462 1.02591 1.71216 1.18408 0.84023 0.86953 0.77955 1.90701 1.26722 1.75147 1.50550 1.20039 0.94593 0.91554 1.08719 1.20920 0.96906 0.93259 0.99284 1.17685 0.83760 0.91841 1.04916 1.43297 1.05117 1.07489 1.53067 1.23353 0.99117 0.85097 1.10096 1.22835 0.92201 0.96494 1.07625 1.70333 1.32394 1.01311 1.19895 1.25770 0.78783 1.01050 1.05053 1.21266 0.89257 1.01773 0.97297 1.21538 0.99185 0.92509 1.00331 1.18834 0.84068 0.91035 0.95527 1.84733 1.28179 1.82805 1.34981 1.24186 0.99050 0.90881 1.09100 1.78160 0.92004 1.16570 1.27474 0.91376 0.79408 0.74699 0.83033 0.76827 0.79125 0.75660 0.80723 0.80694 0.72941 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.70 11.81 21.66 0.26 -47.45 16 2 C -0.01 -0.34 5.50 84.96 0.47 0.13 16 3 Si 1.02 38.54 29.55 68.60 2.03 40.56 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 7 C -0.35 -18.69 10.25 84.02 0.86 -17.83 16 8 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 9 N -0.17 -9.24 3.74 -190.00 -0.71 -9.95 16 10 C -0.08 -3.66 11.49 83.38 0.96 -2.70 16 11 C -0.04 -2.04 6.90 37.75 0.26 -1.78 16 12 N -0.61 -20.64 5.41 -306.77 -1.66 -22.30 16 13 C 0.54 18.43 7.73 86.70 0.67 19.10 16 14 O -0.55 -23.57 12.30 16.90 0.21 -23.36 16 15 C -0.14 -3.47 5.88 -20.02 -0.12 -3.58 16 16 C -0.08 -1.45 8.95 22.64 0.20 -1.25 16 17 C 0.11 1.59 6.63 38.00 0.25 1.84 16 18 N -0.41 -6.09 2.99 -350.47 -1.05 -7.14 16 19 C -0.05 -0.56 10.85 83.06 0.90 0.34 16 20 C -0.05 -0.74 11.86 83.53 0.99 0.25 16 21 N -0.52 -11.15 11.25 -199.73 -2.25 -13.40 16 22 C 0.17 3.04 11.91 180.01 2.14 5.19 16 23 C -0.08 -0.77 9.46 22.41 0.21 -0.55 16 24 C -0.12 -1.44 9.97 22.32 0.22 -1.22 16 25 C 0.15 3.19 6.72 22.84 0.15 3.35 16 26 O -0.49 -11.95 11.56 -69.32 -0.80 -12.75 16 27 C -0.06 -3.10 10.85 85.42 0.93 -2.17 16 28 N -0.31 -18.72 10.40 -56.46 -0.59 -19.31 16 29 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.19 6.68 8.06 -2.91 -0.02 6.65 16 31 H 0.42 10.06 6.85 -92.71 -0.64 9.43 16 32 H 0.15 2.07 5.10 -2.91 -0.01 2.05 16 33 H 0.22 0.70 7.14 -2.91 -0.02 0.68 16 34 H 0.19 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.23 2.68 7.05 -2.91 -0.02 2.66 16 36 H 0.18 0.49 6.79 -2.91 -0.02 0.47 16 37 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.41 7.05 9.06 -74.06 -0.67 6.38 16 39 H 0.17 9.20 5.91 -2.91 -0.02 9.19 16 Total: -1.00 -85.64 343.50 4.40 -81.24 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.14 Total: 34.75 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 9.10 Total: -0.89 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.00 Total: -119.55 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.59 Total: -36.12 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.56 kcal Total: -85.64 4.40 -81.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626936026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.479 kcal (2) G-P(sol) polarization free energy of solvation -85.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds