Wall clock time and date at job start Tue Mar 31 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93214 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48175 * 12 11 10 14 14 C 1.38274 * 120.13728 * 359.76763 * 13 12 11 15 15 C 1.50705 * 119.96893 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21537 * 119.99982 * 359.97438 * 17 16 15 19 19 C 1.47880 * 119.99822 * 180.02562 * 17 16 15 20 20 C 1.39448 * 121.11439 * 359.71484 * 19 17 16 21 21 C 1.38616 * 119.37552 * 179.74414 * 20 19 17 22 22 N 1.31586 * 121.63316 * 0.57311 * 21 20 19 23 23 C 1.32203 * 121.86738 * 359.69776 * 22 21 20 24 24 N 1.37214 * 134.67403 * 179.97438 * 23 22 21 25 25 H 0.96993 * 125.87073 * 359.97438 * 24 23 22 26 26 N 1.28784 * 108.26135 * 180.02562 * 24 23 22 27 27 N 1.28692 * 111.75716 * 0.02562 * 26 24 23 28 28 C 1.34392 * 109.15315 * 359.97438 * 27 26 24 29 29 C 1.38123 * 120.07195 * 0.02562 * 14 13 12 30 30 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 31 31 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.96718 * 180.23027 * 12 11 10 33 33 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 34 34 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 35 35 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 36 36 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 37 37 H 1.08008 * 120.31121 * 0.02562 * 20 19 17 38 38 H 1.08001 * 119.18800 * 180.27233 * 21 20 19 39 39 H 1.07998 * 120.03894 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8531 -4.7989 -0.1977 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4785 -3.7729 -0.4665 16 7 8.0828 -3.8566 0.8654 17 6 9.4223 -3.9319 0.9940 18 8 10.1288 -3.9310 0.0050 19 6 10.0324 -4.0169 2.3384 20 6 9.2442 -4.0149 3.4888 21 6 9.8537 -4.1014 4.7307 22 7 11.1618 -4.1746 4.8540 23 6 11.9630 -4.1754 3.8024 24 7 13.3221 -4.2390 3.6251 25 1 13.9850 -4.3004 4.3305 26 7 13.5664 -4.2022 2.3612 27 7 12.4850 -4.1184 1.6686 28 6 11.4294 -4.0963 2.5001 29 6 5.3550 -2.4724 -0.2262 30 1 -0.4849 0.8401 -0.0004 31 1 2.1493 -3.5267 0.0145 32 1 3.2704 -5.7082 -0.1864 33 1 5.7198 -5.8205 -0.4034 34 1 7.7495 -4.6564 -1.0447 35 1 7.8422 -2.8802 -0.9752 36 1 7.5190 -3.8577 1.6547 37 1 8.1687 -3.9511 3.4126 38 1 9.2402 -4.1041 5.6195 39 1 5.9409 -1.5652 -0.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628996191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:48 Heat of formation + Delta-G solvation = 101.234639 kcal Electronic energy + Delta-G solvation = -27001.732880 eV Core-core repulsion = 22912.981534 eV Total energy + Delta-G solvation = -4088.751346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.81967 -40.30379 -39.40458 -38.89267 -37.05138 -34.79180 -34.59970 -32.59342 -32.46205 -31.26051 -30.77584 -29.46937 -26.71987 -25.56635 -25.05532 -24.32416 -23.34151 -21.91757 -21.32635 -20.82182 -19.33832 -18.97013 -17.98716 -17.76628 -17.21753 -17.02789 -16.10881 -15.78135 -15.57078 -15.28944 -15.16235 -14.78824 -14.21096 -14.08880 -13.87985 -13.69493 -13.58246 -13.27102 -12.83787 -12.73209 -12.63701 -12.26014 -12.17122 -12.07669 -11.85826 -11.53057 -11.00850 -10.94124 -10.81963 -10.58592 -10.25217 -9.92433 -9.76618 -9.54683 -9.51500 -9.17804 -8.97304 -8.41063 -7.54462 -6.50661 -4.18225 -0.39891 0.39873 1.68462 1.72981 1.78275 2.08529 2.51097 2.89199 3.16177 3.20664 3.25488 3.33598 3.34684 3.77957 3.98040 4.07519 4.15786 4.29510 4.37040 4.58780 4.69706 4.93602 5.00024 5.01622 5.07846 5.25252 5.35494 5.56648 5.68668 5.68911 5.76862 5.95017 6.08742 6.14074 6.22105 6.35264 6.61025 6.92997 7.00283 7.04249 7.14462 7.27942 7.44358 7.67943 7.74780 7.92627 7.96400 8.84084 9.44464 10.56625 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002255 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.370807 B =12413.987874 C =12952.938698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.211 4.211 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.077 4.077 15 C 0.168 3.832 16 N -0.711 5.711 17 C 0.549 3.451 18 O -0.503 6.503 19 C -0.006 4.006 20 C -0.139 4.139 21 C 0.164 3.836 22 N -0.459 5.459 23 C 0.214 3.786 24 N -0.406 5.406 25 H 0.458 0.542 26 N 0.002 4.998 27 N -0.209 5.209 28 C 0.003 3.997 29 C -0.171 4.171 30 H 0.280 0.720 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.403 0.597 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.979 -9.702 10.530 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.230 4.230 12 C -0.095 4.095 13 C -0.205 4.205 14 C -0.078 4.078 15 C 0.046 3.954 16 N -0.364 5.364 17 C 0.333 3.667 18 O -0.377 6.377 19 C -0.023 4.023 20 C -0.163 4.163 21 C -0.009 4.009 22 N -0.173 5.173 23 C -0.030 4.030 24 N -0.136 5.136 25 H 0.306 0.694 26 N 0.019 4.981 27 N -0.085 5.085 28 C -0.126 4.126 29 C -0.191 4.191 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.239 0.761 37 H 0.179 0.821 38 H 0.202 0.798 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.890 -9.382 9.417 24.760 hybrid contribution -0.986 0.682 0.930 1.518 sum 19.903 -8.699 10.347 24.060 Atomic orbital electron populations 1.69641 1.05591 1.28636 1.47504 1.24475 0.95032 0.98892 0.95529 0.86182 0.80288 0.81373 0.79074 1.19812 1.20734 1.18349 1.20757 0.76755 0.96659 1.52542 0.87566 1.83576 1.22708 1.25561 1.80113 1.19058 0.91550 0.85642 0.93372 1.21382 1.01351 0.91920 1.08372 1.20812 0.94151 0.96863 0.97715 1.20560 0.93876 0.96744 1.09335 1.19229 0.93165 0.93051 1.02321 1.20227 0.88978 1.03018 0.83165 1.46024 1.05803 1.74190 1.10386 1.17877 0.82573 0.78417 0.87833 1.90882 1.61171 1.47464 1.38143 1.19701 0.89593 0.97948 0.95047 1.22500 1.02095 0.99649 0.92039 1.22893 0.88077 0.92038 0.97853 1.66333 1.05353 1.14174 1.31433 1.19874 0.86474 1.04871 0.91758 1.44715 1.05097 1.55414 1.08382 0.69401 1.78276 1.21265 1.11852 0.86710 1.75595 0.93432 1.15463 1.23989 1.20121 0.94603 1.06850 0.91074 1.20090 0.92005 0.97239 1.09757 0.90933 0.84815 0.86935 0.87205 0.90366 0.90376 0.76134 0.82100 0.79820 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 13.96 55.48 0.77 -23.62 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 20.84 28.62 -169.99 -4.86 15.97 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.46 9.95 30.89 0.31 -10.15 16 8 H 0.11 2.89 5.44 -52.49 -0.29 2.60 16 9 O -0.21 -5.30 8.59 0.05 0.00 -5.30 16 10 C 0.16 3.27 6.65 -39.11 -0.26 3.01 16 11 C -0.21 -4.10 9.17 -39.40 -0.36 -4.46 16 12 C -0.08 -1.22 10.04 -39.61 -0.40 -1.62 16 13 C -0.19 -2.65 9.70 -39.54 -0.38 -3.03 16 14 C -0.08 -1.12 5.25 -104.65 -0.55 -1.67 16 15 C 0.17 2.12 5.80 -5.19 -0.03 2.09 16 16 N -0.71 -7.82 5.51 -62.42 -0.34 -8.17 16 17 C 0.55 7.05 7.79 -12.31 -0.10 6.96 16 18 O -0.50 -8.45 16.27 5.33 0.09 -8.36 16 19 C -0.01 -0.07 5.92 -104.51 -0.62 -0.69 16 20 C -0.14 -0.93 9.61 -38.99 -0.37 -1.30 16 21 C 0.16 0.97 11.14 -17.52 -0.20 0.77 16 22 N -0.46 -3.85 10.35 -12.39 -0.13 -3.98 16 23 C 0.21 2.12 8.56 -156.21 -1.34 0.78 16 24 N -0.41 -3.31 7.06 31.11 0.22 -3.09 16 25 H 0.46 1.76 8.96 -190.26 -1.71 0.05 16 26 N 0.00 0.02 13.29 60.35 0.80 0.82 16 27 N -0.21 -2.95 11.92 32.23 0.38 -2.56 16 28 C 0.00 0.03 6.97 -84.72 -0.59 -0.56 16 29 C -0.17 -2.99 9.65 -39.39 -0.38 -3.37 16 30 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 32 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.40 3.49 6.61 -40.82 -0.27 3.22 16 37 H 0.16 0.60 6.53 -52.48 -0.34 0.26 16 38 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -33.99 348.45 -7.75 -41.74 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.57 Total: 2.88 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -5.36 Total: -11.59 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.71 Total: -40.60 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.86 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.99 -7.75 -41.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628996191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.975 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds