Wall clock time and date at job start Tue Mar 31 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93214 * 179.76605 * 11 10 9 13 13 C 1.38322 * 120.06821 * 0.48175 * 12 11 10 14 14 C 1.38274 * 120.13728 * 359.76763 * 13 12 11 15 15 C 1.50705 * 119.96893 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47170 * 270.02604 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21537 * 119.99982 * 359.97438 * 17 16 15 19 19 C 1.47880 * 119.99822 * 180.02562 * 17 16 15 20 20 C 1.39448 * 121.11439 * 359.71484 * 19 17 16 21 21 C 1.38616 * 119.37552 * 179.74414 * 20 19 17 22 22 N 1.31586 * 121.63316 * 0.57311 * 21 20 19 23 23 C 1.32203 * 121.86738 * 359.69776 * 22 21 20 24 24 N 1.37214 * 134.67403 * 179.97438 * 23 22 21 25 25 H 0.96993 * 125.87073 * 359.97438 * 24 23 22 26 26 N 1.28784 * 108.26135 * 180.02562 * 24 23 22 27 27 N 1.28692 * 111.75716 * 0.02562 * 26 24 23 28 28 C 1.34392 * 109.15315 * 359.97438 * 27 26 24 29 29 C 1.38123 * 120.07195 * 0.02562 * 14 13 12 30 30 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 31 31 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.96718 * 180.23027 * 12 11 10 33 33 H 1.08001 * 119.93063 * 179.74798 * 13 12 11 34 34 H 1.09006 * 109.46654 * 30.02469 * 15 14 13 35 35 H 1.08999 * 109.47320 * 150.02208 * 15 14 13 36 36 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 37 37 H 1.08008 * 120.31121 * 0.02562 * 20 19 17 38 38 H 1.08001 * 119.18800 * 180.27233 * 21 20 19 39 39 H 1.07998 * 120.03894 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8531 -4.7989 -0.1977 13 6 5.2295 -4.8618 -0.3196 14 6 5.9790 -3.6999 -0.3341 15 6 7.4785 -3.7729 -0.4665 16 7 8.0828 -3.8566 0.8654 17 6 9.4223 -3.9319 0.9940 18 8 10.1288 -3.9310 0.0050 19 6 10.0324 -4.0169 2.3384 20 6 9.2442 -4.0149 3.4888 21 6 9.8537 -4.1014 4.7307 22 7 11.1618 -4.1746 4.8540 23 6 11.9630 -4.1754 3.8024 24 7 13.3221 -4.2390 3.6251 25 1 13.9850 -4.3004 4.3305 26 7 13.5664 -4.2022 2.3612 27 7 12.4850 -4.1184 1.6686 28 6 11.4294 -4.0963 2.5001 29 6 5.3550 -2.4724 -0.2262 30 1 -0.4849 0.8401 -0.0004 31 1 2.1493 -3.5267 0.0145 32 1 3.2704 -5.7082 -0.1864 33 1 5.7198 -5.8205 -0.4034 34 1 7.7495 -4.6564 -1.0447 35 1 7.8422 -2.8802 -0.9752 36 1 7.5190 -3.8577 1.6547 37 1 8.1687 -3.9511 3.4126 38 1 9.2402 -4.1041 5.6195 39 1 5.9409 -1.5652 -0.2380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628996191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:47 Heat of formation + Delta-G solvation = 75.707630 kcal Electronic energy + Delta-G solvation = -27002.839814 eV Core-core repulsion = 22912.981534 eV Total energy + Delta-G solvation = -4089.858280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.54797 -41.26979 -40.77777 -39.74289 -38.54014 -35.91130 -35.35357 -34.43010 -33.38633 -32.04331 -31.85617 -30.92867 -27.79613 -27.13169 -26.17233 -24.99024 -24.19252 -23.28631 -22.34798 -22.10759 -20.24346 -19.74171 -19.56647 -18.90394 -18.48224 -17.77263 -17.08913 -16.82261 -16.74900 -16.57815 -16.14022 -15.79289 -15.69656 -15.60917 -15.09803 -14.83191 -14.50683 -14.31701 -14.16098 -14.01112 -13.76023 -13.51050 -13.46671 -13.08462 -12.81453 -12.68734 -12.57907 -12.44028 -12.34840 -11.92011 -11.54066 -11.28492 -10.89753 -10.69010 -10.44714 -10.32217 -10.10246 -9.76584 -9.09160 -8.47816 -6.20174 -1.09918 -0.21686 0.36288 0.68354 0.96516 1.10885 1.34146 1.37172 1.53308 1.71119 1.95497 2.29227 2.52408 2.67066 2.80780 3.00643 3.12323 3.19362 3.31491 3.41819 3.70252 3.78606 4.09820 4.12875 4.29840 4.32382 4.34628 4.44625 4.53139 4.68018 4.71057 4.76771 4.95700 5.17089 5.22042 5.25723 5.40770 5.63720 5.66255 5.72614 5.78312 5.92049 6.22086 6.40192 6.41285 6.87083 6.98595 7.06147 7.61474 8.63491 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002255 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.370807 B =12413.987874 C =12952.938698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.395 4.395 8 H 0.085 0.915 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.226 4.226 12 C -0.073 4.073 13 C -0.156 4.156 14 C -0.060 4.060 15 C 0.174 3.826 16 N -0.698 5.698 17 C 0.552 3.448 18 O -0.551 6.551 19 C -0.038 4.038 20 C -0.108 4.108 21 C 0.176 3.824 22 N -0.463 5.463 23 C 0.207 3.793 24 N -0.382 5.382 25 H 0.474 0.526 26 N -0.011 5.011 27 N -0.260 5.260 28 C -0.024 4.024 29 C -0.167 4.167 30 H 0.284 0.716 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.416 0.584 37 H 0.197 0.803 38 H 0.234 0.766 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.378 -11.197 12.518 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.472 4.472 8 H 0.102 0.898 9 O -0.153 6.153 10 C 0.071 3.929 11 C -0.245 4.245 12 C -0.091 4.091 13 C -0.174 4.174 14 C -0.061 4.061 15 C 0.051 3.949 16 N -0.351 5.351 17 C 0.338 3.662 18 O -0.429 6.429 19 C -0.054 4.054 20 C -0.131 4.131 21 C 0.003 3.997 22 N -0.177 5.177 23 C -0.037 4.037 24 N -0.116 5.116 25 H 0.326 0.674 26 N 0.007 4.993 27 N -0.135 5.135 28 C -0.154 4.154 29 C -0.187 4.187 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.255 0.745 37 H 0.214 0.786 38 H 0.250 0.750 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.339 -10.919 11.430 27.366 hybrid contribution -1.268 0.816 0.408 1.562 sum 21.070 -10.103 11.837 26.195 Atomic orbital electron populations 1.69725 1.06865 1.29500 1.50254 1.25233 0.95816 1.02027 0.95714 0.85264 0.78954 0.77736 0.79081 1.19558 1.19467 1.18422 1.20693 0.78062 0.96075 1.52346 0.89800 1.83522 1.21200 1.27462 1.83089 1.19568 0.92933 0.85177 0.95268 1.21409 1.00419 0.93288 1.09410 1.21135 0.95202 0.96375 0.96395 1.21037 0.93098 0.98219 1.05096 1.19379 0.94223 0.92034 1.00445 1.20112 0.87254 1.03402 0.84149 1.45808 1.05476 1.73554 1.10300 1.18169 0.82533 0.77211 0.88267 1.90858 1.62242 1.49843 1.39935 1.19660 0.89444 1.01206 0.95081 1.22968 1.03397 0.95915 0.90864 1.23812 0.87489 0.89244 0.99163 1.66507 1.06343 1.14303 1.30503 1.19977 0.86888 1.05401 0.91391 1.44713 1.05332 1.53498 1.08064 0.67378 1.78167 1.20906 1.12525 0.87742 1.75514 0.94610 1.17694 1.25682 1.20468 0.95156 1.07942 0.91873 1.20274 0.90559 0.98859 1.09014 0.90665 0.87280 0.83881 0.83236 0.89267 0.91039 0.74513 0.78642 0.74998 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.44 13.96 21.61 0.30 -53.14 16 2 C 0.01 0.59 5.49 84.83 0.47 1.06 16 3 Si 0.97 43.91 28.62 68.60 1.96 45.88 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.40 -22.09 9.95 67.92 0.68 -21.42 16 8 H 0.08 4.88 5.44 -2.91 -0.02 4.87 16 9 O -0.25 -12.43 8.59 -22.74 -0.20 -12.63 16 10 C 0.12 5.02 6.65 22.58 0.15 5.17 16 11 C -0.23 -8.75 9.17 22.39 0.21 -8.54 16 12 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 13 C -0.16 -3.70 9.70 22.30 0.22 -3.48 16 14 C -0.06 -1.54 5.25 -19.88 -0.10 -1.64 16 15 C 0.17 3.83 5.80 85.64 0.50 4.32 16 16 N -0.70 -13.11 5.51 -469.68 -2.59 -15.70 16 17 C 0.55 13.29 7.79 86.80 0.68 13.97 16 18 O -0.55 -18.49 16.27 -3.83 -0.06 -18.55 16 19 C -0.04 -0.74 5.92 -19.79 -0.12 -0.86 16 20 C -0.11 -0.97 9.61 22.65 0.22 -0.76 16 21 C 0.18 1.22 11.14 84.82 0.94 2.17 16 22 N -0.46 -6.23 10.35 -193.10 -2.00 -8.23 16 23 C 0.21 3.77 8.56 134.17 1.15 4.92 16 24 N -0.38 -5.93 7.06 -55.48 -0.39 -6.32 16 25 H 0.47 3.08 8.96 -219.84 -1.97 1.11 16 26 N -0.01 -0.25 13.29 37.02 0.49 0.25 16 27 N -0.26 -7.52 11.92 -51.94 -0.62 -8.14 16 28 C -0.02 -0.58 6.97 40.06 0.28 -0.30 16 29 C -0.17 -5.58 9.65 22.39 0.22 -5.36 16 30 H 0.28 15.14 8.31 -92.71 -0.77 14.36 16 31 H 0.11 4.75 5.64 -2.91 -0.02 4.74 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.09 1.86 8.09 -2.38 -0.02 1.85 16 35 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 36 H 0.42 5.36 6.61 -92.71 -0.61 4.75 16 37 H 0.20 0.29 6.53 -2.91 -0.02 0.27 16 38 H 0.23 -0.68 8.06 -2.91 -0.02 -0.70 16 39 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -80.77 348.45 1.18 -79.59 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -1.42 Total: 9.62 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.69 Total: -12.62 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -4.80 Total: -91.28 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.26 Total: -31.18 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.96 Total: 45.88 kcal Total: -80.77 1.18 -79.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628996191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.293 kcal (2) G-P(sol) polarization free energy of solvation -80.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds