Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86793 * 120.00470 * 2 1 4 4 H 1.48496 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47140 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.47366 * 59.99773 * 3 2 1 7 7 C 1.38660 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00192 * 185.05595 * 9 7 2 11 11 C 1.38905 * 120.06636 * 354.48967 * 10 9 7 12 12 C 1.38078 * 119.93219 * 179.97438 * 11 10 9 13 13 C 1.38331 * 120.06797 * 359.73728 * 12 11 10 14 14 C 1.38278 * 120.13285 * 0.51408 * 13 12 11 15 15 C 1.50703 * 119.96122 * 179.76403 * 14 13 12 16 16 N 1.46493 * 109.47452 * 269.72601 * 15 14 13 17 17 C 1.34773 * 120.00258 * 180.02562 * 16 15 14 18 18 O 1.21522 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.48123 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.39815 * 119.37574 * 179.72218 * 19 17 16 21 21 C 1.36970 * 119.61015 * 179.73240 * 20 19 17 22 22 C 1.39819 * 118.24956 * 0.56026 * 21 20 19 23 23 N 1.34650 * 135.00507 * 179.72657 * 22 21 20 24 24 N 1.28670 * 109.15864 * 179.97438 * 23 22 21 25 25 N 1.28771 * 111.84730 * 0.02562 * 24 23 22 26 26 H 0.97004 * 125.85967 * 180.02562 * 25 24 23 27 27 C 1.37247 * 108.28083 * 0.02562 * 25 24 23 28 28 N 1.31962 * 134.70397 * 180.02562 * 27 25 24 29 29 C 1.38122 * 120.07635 * 359.49075 * 14 13 12 30 30 H 0.97003 * 119.99081 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.03324 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.96799 * 179.97438 * 12 11 10 33 33 H 1.07993 * 119.93019 * 180.28186 * 13 12 11 34 34 H 1.09006 * 109.47200 * 149.72430 * 15 14 13 35 35 H 1.08999 * 109.47304 * 29.72708 * 15 14 13 36 36 H 0.97002 * 119.99936 * 359.72084 * 16 15 14 37 37 H 1.08000 * 120.19408 * 0.02562 * 20 19 17 38 38 H 1.07994 * 120.87718 * 180.22589 * 21 20 19 39 39 H 1.07991 * 120.03835 * 180.23569 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8911 2.3964 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5047 0.1077 11 6 3.4572 -3.4396 0.0957 12 6 4.2022 -4.5970 0.2054 13 6 3.5682 -5.8199 0.3326 14 6 2.1871 -5.8884 0.3396 15 6 1.5005 -7.2232 0.4729 16 7 1.2719 -7.7901 -0.8584 17 6 0.6666 -8.9874 -0.9862 18 8 0.3109 -9.5971 0.0030 19 6 0.4350 -9.5603 -2.3324 20 6 -0.1888 -10.8061 -2.4496 21 6 -0.4103 -11.3378 -3.6923 22 6 0.0123 -10.6097 -4.8086 23 7 -0.0253 -10.8019 -6.1408 24 7 0.5159 -9.7932 -6.7283 25 7 0.9279 -8.9116 -5.8849 26 1 1.3648 -8.0742 -6.1060 27 6 0.6428 -9.3602 -4.6195 28 7 0.8299 -8.8859 -3.4024 29 6 1.4363 -4.7343 0.2301 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4847 0.0007 32 1 5.2810 -4.5471 0.1958 33 1 4.1531 -6.7232 0.4228 34 1 0.5449 -7.0912 0.9806 35 1 2.1294 -7.8991 1.0525 36 1 1.5522 -7.3016 -1.6482 37 1 -0.4985 -11.3438 -1.5656 38 1 -0.8937 -12.2968 -3.8067 39 1 0.3577 -4.7881 0.2395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633474133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = 94.871888 kcal Electronic energy + Delta-G solvation = -26862.820574 eV Core-core repulsion = 22773.793318 eV Total energy + Delta-G solvation = -4089.027256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.83210 -40.50159 -39.26189 -38.59480 -36.87217 -34.92720 -34.55281 -32.42167 -32.31452 -31.61223 -30.65487 -29.20045 -26.81189 -25.63757 -25.05762 -24.15259 -23.17906 -21.79382 -21.28059 -20.86877 -19.40998 -18.93357 -18.41400 -17.62997 -17.06433 -17.04622 -16.07647 -15.65637 -15.60630 -15.14837 -14.76583 -14.61630 -14.38822 -13.97580 -13.74732 -13.71207 -13.49486 -13.35137 -12.82754 -12.75520 -12.48817 -12.25755 -12.23638 -12.13716 -11.72960 -11.45102 -11.02999 -10.88133 -10.76580 -10.67299 -10.50032 -10.00488 -9.74609 -9.56532 -9.45861 -9.13388 -8.94077 -8.31415 -7.38426 -6.53766 -4.13274 -0.36111 0.49103 1.63315 1.65693 1.81833 2.21100 2.41984 2.95830 3.06952 3.08094 3.13504 3.27791 3.30275 3.75179 3.88455 3.89172 4.28877 4.33365 4.51265 4.84871 4.87902 4.95306 5.01621 5.18764 5.27002 5.38722 5.47417 5.65629 5.75902 5.77757 5.82339 6.01663 6.10044 6.19430 6.27285 6.49049 6.75662 6.85695 6.94319 7.11680 7.21651 7.30210 7.39625 7.64157 7.65307 7.90356 7.94904 8.91725 9.59912 10.63988 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.002294 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.047691 B =12204.399426 C =13255.639718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.224 4.224 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.075 4.075 15 C 0.165 3.835 16 N -0.695 5.695 17 C 0.568 3.432 18 O -0.527 6.527 19 C 0.154 3.846 20 C -0.121 4.121 21 C -0.002 4.002 22 C -0.024 4.024 23 N -0.240 5.240 24 N 0.012 4.988 25 N -0.400 5.400 26 H 0.461 0.539 27 C 0.217 3.783 28 N -0.442 5.442 29 C -0.170 4.170 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -18.523 -6.883 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.213 4.213 14 C -0.076 4.076 15 C 0.043 3.957 16 N -0.345 5.345 17 C 0.352 3.648 18 O -0.403 6.403 19 C -0.001 4.001 20 C -0.145 4.145 21 C -0.033 4.033 22 C -0.152 4.152 23 N -0.117 5.117 24 N 0.029 4.971 25 N -0.132 5.132 26 H 0.310 0.690 27 C -0.027 4.027 28 N -0.159 5.159 29 C -0.190 4.190 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.251 0.749 37 H 0.186 0.814 38 H 0.178 0.822 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.459 -18.321 -7.609 19.990 hybrid contribution 0.745 1.394 0.294 1.607 sum 3.203 -16.927 -7.315 18.716 Atomic orbital electron populations 1.70050 1.05980 1.27696 1.45752 1.25307 0.95856 0.98887 0.96438 0.85639 0.79119 0.80293 0.78334 1.19082 1.20112 1.20056 1.21374 0.91822 0.80731 1.53008 0.88968 1.83982 1.34302 1.11423 1.78209 1.19320 0.90259 0.88082 0.92721 1.21258 0.93847 0.99123 1.10143 1.20749 0.98597 0.92250 0.97853 1.20479 0.93295 0.97181 1.10361 1.19215 0.93509 0.92676 1.02178 1.20289 1.00559 0.91670 0.83204 1.46040 1.58389 1.19302 1.10790 1.17666 0.78869 0.81796 0.86513 1.90823 1.51433 1.60744 1.37254 1.21286 0.95266 0.92271 0.91286 1.21757 0.98392 0.95300 0.99018 1.20536 0.95006 0.99496 0.88223 1.20703 1.04498 0.96201 0.93760 1.75431 1.16587 1.15853 1.03791 1.78131 1.07324 0.94421 1.17265 1.44737 1.46073 1.20493 1.01878 0.69009 1.19780 1.01789 0.93406 0.87761 1.66291 1.18861 1.34899 0.95824 1.20085 0.99450 0.89848 1.09589 0.91968 0.85435 0.87256 0.87445 0.90258 0.90338 0.74946 0.81421 0.82158 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.59 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.18 -4.81 9.76 0.06 0.00 -4.81 16 10 C 0.15 3.41 6.65 -39.10 -0.26 3.15 16 11 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -3.02 9.70 -39.53 -0.38 -3.40 16 14 C -0.08 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.16 2.23 5.80 -5.20 -0.03 2.19 16 16 N -0.69 -8.74 5.54 -62.34 -0.35 -9.09 16 17 C 0.57 7.11 7.81 -12.20 -0.10 7.01 16 18 O -0.53 -7.64 16.29 5.35 0.09 -7.55 16 19 C 0.15 1.65 6.74 -82.93 -0.56 1.09 16 20 C -0.12 -1.00 9.55 -39.45 -0.38 -1.38 16 21 C 0.00 -0.01 10.17 -39.45 -0.40 -0.41 16 22 C -0.02 -0.24 7.38 -84.90 -0.63 -0.87 16 23 N -0.24 -2.64 12.43 32.12 0.40 -2.24 16 24 N 0.01 0.12 13.28 60.35 0.80 0.92 16 25 N -0.40 -3.39 7.06 31.13 0.22 -3.17 16 26 H 0.46 2.38 8.96 -190.25 -1.71 0.67 16 27 C 0.22 2.24 8.56 -156.28 -1.34 0.91 16 28 N -0.44 -4.83 9.54 -8.90 -0.08 -4.91 16 29 C -0.17 -3.31 9.65 -39.39 -0.38 -3.69 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.41 5.09 7.77 -40.82 -0.32 4.78 16 37 H 0.17 1.13 7.61 -52.49 -0.40 0.73 16 38 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -32.37 351.75 -8.10 -40.47 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.66 Total: 7.12 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.56 Total: -13.08 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 1.75 Total: -42.33 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.37 -8.10 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633474133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.344 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds