Wall clock time and date at job start Tue Mar 31 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86793 * 120.00470 * 2 1 4 4 H 1.48496 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47140 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.47366 * 59.99773 * 3 2 1 7 7 C 1.38660 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00192 * 185.05595 * 9 7 2 11 11 C 1.38905 * 120.06636 * 354.48967 * 10 9 7 12 12 C 1.38078 * 119.93219 * 179.97438 * 11 10 9 13 13 C 1.38331 * 120.06797 * 359.73728 * 12 11 10 14 14 C 1.38278 * 120.13285 * 0.51408 * 13 12 11 15 15 C 1.50703 * 119.96122 * 179.76403 * 14 13 12 16 16 N 1.46493 * 109.47452 * 269.72601 * 15 14 13 17 17 C 1.34773 * 120.00258 * 180.02562 * 16 15 14 18 18 O 1.21522 * 119.99940 * 359.97438 * 17 16 15 19 19 C 1.48123 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.39815 * 119.37574 * 179.72218 * 19 17 16 21 21 C 1.36970 * 119.61015 * 179.73240 * 20 19 17 22 22 C 1.39819 * 118.24956 * 0.56026 * 21 20 19 23 23 N 1.34650 * 135.00507 * 179.72657 * 22 21 20 24 24 N 1.28670 * 109.15864 * 179.97438 * 23 22 21 25 25 N 1.28771 * 111.84730 * 0.02562 * 24 23 22 26 26 H 0.97004 * 125.85967 * 180.02562 * 25 24 23 27 27 C 1.37247 * 108.28083 * 0.02562 * 25 24 23 28 28 N 1.31962 * 134.70397 * 180.02562 * 27 25 24 29 29 C 1.38122 * 120.07635 * 359.49075 * 14 13 12 30 30 H 0.97003 * 119.99081 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.03324 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.96799 * 179.97438 * 12 11 10 33 33 H 1.07993 * 119.93019 * 180.28186 * 13 12 11 34 34 H 1.09006 * 109.47200 * 149.72430 * 15 14 13 35 35 H 1.08999 * 109.47304 * 29.72708 * 15 14 13 36 36 H 0.97002 * 119.99936 * 359.72084 * 16 15 14 37 37 H 1.08000 * 120.19408 * 0.02562 * 20 19 17 38 38 H 1.07994 * 120.87718 * 180.22589 * 21 20 19 39 39 H 1.07991 * 120.03835 * 180.23569 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8911 2.3964 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5047 0.1077 11 6 3.4572 -3.4396 0.0957 12 6 4.2022 -4.5970 0.2054 13 6 3.5682 -5.8199 0.3326 14 6 2.1871 -5.8884 0.3396 15 6 1.5005 -7.2232 0.4729 16 7 1.2719 -7.7901 -0.8584 17 6 0.6666 -8.9874 -0.9862 18 8 0.3109 -9.5971 0.0030 19 6 0.4350 -9.5603 -2.3324 20 6 -0.1888 -10.8061 -2.4496 21 6 -0.4103 -11.3378 -3.6923 22 6 0.0123 -10.6097 -4.8086 23 7 -0.0253 -10.8019 -6.1408 24 7 0.5159 -9.7932 -6.7283 25 7 0.9279 -8.9116 -5.8849 26 1 1.3648 -8.0742 -6.1060 27 6 0.6428 -9.3602 -4.6195 28 7 0.8299 -8.8859 -3.4024 29 6 1.4363 -4.7343 0.2301 30 1 -0.4849 0.8401 -0.0004 31 1 3.9528 -2.4847 0.0007 32 1 5.2810 -4.5471 0.1958 33 1 4.1531 -6.7232 0.4228 34 1 0.5449 -7.0912 0.9806 35 1 2.1294 -7.8991 1.0525 36 1 1.5522 -7.3016 -1.6482 37 1 -0.4985 -11.3438 -1.5656 38 1 -0.8937 -12.2968 -3.8067 39 1 0.3577 -4.7881 0.2395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633474133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:37 Heat of formation + Delta-G solvation = 71.524064 kcal Electronic energy + Delta-G solvation = -26863.833012 eV Core-core repulsion = 22773.793318 eV Total energy + Delta-G solvation = -4090.039693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.56948 -41.44168 -40.78401 -39.56290 -38.44040 -35.96996 -35.41666 -34.29663 -33.12111 -32.54179 -31.82436 -30.75401 -27.95074 -27.27143 -26.21099 -24.95663 -23.92654 -23.27863 -22.56155 -22.06111 -20.24923 -19.80710 -19.52014 -19.12297 -18.61015 -17.80988 -17.09685 -16.84310 -16.62426 -16.51011 -16.13917 -16.08581 -15.61028 -15.44600 -15.00962 -14.61504 -14.45484 -14.32707 -14.23425 -13.94716 -13.67045 -13.58772 -13.31590 -13.05149 -12.99673 -12.84856 -12.58260 -12.37639 -12.28187 -12.09753 -11.67830 -11.21790 -10.85193 -10.80634 -10.49238 -10.32610 -10.14025 -9.77202 -9.03886 -8.48233 -6.16507 -1.11821 -0.20079 0.36448 0.70164 0.83977 0.97298 1.35037 1.42586 1.52880 1.56439 1.99164 2.16289 2.49742 2.53744 2.82388 3.00425 3.14452 3.17984 3.39149 3.53974 3.66720 3.82413 4.09031 4.18912 4.23477 4.30547 4.41622 4.52317 4.62856 4.71419 4.72761 4.75357 5.01027 5.11133 5.14639 5.21326 5.25594 5.49346 5.61622 5.69860 5.71119 6.00799 6.06982 6.16571 6.41603 6.88581 6.95662 6.96948 7.77380 8.75087 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013582 B = 0.002294 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.047691 B =12204.399426 C =13255.639718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.411 4.411 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.111 3.889 11 C -0.234 4.234 12 C -0.071 4.071 13 C -0.167 4.167 14 C -0.061 4.061 15 C 0.170 3.830 16 N -0.695 5.695 17 C 0.573 3.427 18 O -0.547 6.547 19 C 0.141 3.859 20 C -0.115 4.115 21 C 0.013 3.987 22 C -0.034 4.034 23 N -0.258 5.258 24 N 0.007 4.993 25 N -0.387 5.387 26 H 0.473 0.527 27 C 0.202 3.798 28 N -0.454 5.454 29 C -0.180 4.180 30 H 0.272 0.728 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.416 0.584 37 H 0.186 0.814 38 H 0.196 0.804 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -20.943 -6.899 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.061 3.939 11 C -0.253 4.253 12 C -0.089 4.089 13 C -0.186 4.186 14 C -0.061 4.061 15 C 0.048 3.952 16 N -0.345 5.345 17 C 0.357 3.643 18 O -0.424 6.424 19 C -0.013 4.013 20 C -0.138 4.138 21 C -0.018 4.018 22 C -0.162 4.162 23 N -0.135 5.135 24 N 0.023 4.977 25 N -0.121 5.121 26 H 0.324 0.676 27 C -0.042 4.042 28 N -0.171 5.171 29 C -0.200 4.200 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.252 0.748 37 H 0.204 0.796 38 H 0.213 0.787 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.700 -20.785 -7.639 22.638 hybrid contribution 0.169 1.772 0.292 1.804 sum 4.869 -19.013 -7.347 20.957 Atomic orbital electron populations 1.70196 1.08043 1.28690 1.49001 1.26573 0.96814 1.02741 0.95955 0.84539 0.78345 0.74943 0.78469 1.17299 1.19487 1.19511 1.21853 0.92524 0.81356 1.52973 0.87928 1.83947 1.35952 1.12576 1.81445 1.19868 0.91637 0.87879 0.94507 1.21381 0.93035 1.00410 1.10515 1.21165 1.00415 0.91188 0.96104 1.21022 0.93096 0.98295 1.06161 1.19449 0.93972 0.92615 1.00106 1.20228 1.00547 0.90475 0.83969 1.45959 1.58666 1.19517 1.10375 1.17837 0.78063 0.81327 0.87058 1.90812 1.52213 1.61239 1.38152 1.21165 0.96508 0.93286 0.90369 1.21934 0.97578 0.94320 0.99986 1.20935 0.93638 1.00276 0.86935 1.21087 1.04607 0.96487 0.94023 1.75407 1.17379 1.16374 1.04309 1.78079 1.07416 0.94631 1.17526 1.44771 1.45387 1.20662 1.01264 0.67583 1.19922 1.02448 0.93929 0.87936 1.66192 1.19493 1.35350 0.96089 1.20244 0.99480 0.90186 1.10113 0.91902 0.86273 0.83426 0.83240 0.90759 0.88255 0.74768 0.79644 0.78675 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.67 21.62 0.30 -55.51 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 3 Si 1.02 41.93 29.55 68.60 2.03 43.96 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.41 -23.25 9.49 67.92 0.64 -22.61 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.56 9.76 -22.72 -0.22 -13.78 16 10 C 0.11 5.24 6.65 22.58 0.15 5.39 16 11 C -0.23 -9.44 9.17 22.39 0.21 -9.24 16 12 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 13 C -0.17 -4.51 9.70 22.30 0.22 -4.29 16 14 C -0.06 -1.83 5.25 -19.88 -0.10 -1.93 16 15 C 0.17 4.20 5.80 85.64 0.50 4.69 16 16 N -0.69 -16.18 5.54 -469.45 -2.60 -18.78 16 17 C 0.57 13.29 7.81 86.87 0.68 13.97 16 18 O -0.55 -14.79 16.29 -3.79 -0.06 -14.85 16 19 C 0.14 2.77 6.74 42.05 0.28 3.05 16 20 C -0.11 -1.61 9.55 22.35 0.21 -1.40 16 21 C 0.01 0.16 10.17 22.35 0.23 0.38 16 22 C -0.03 -0.63 7.38 39.83 0.29 -0.34 16 23 N -0.26 -5.35 12.43 -52.29 -0.65 -6.00 16 24 N 0.01 0.13 13.28 37.02 0.49 0.62 16 25 N -0.39 -6.17 7.06 -55.41 -0.39 -6.56 16 26 H 0.47 4.49 8.96 -219.83 -1.97 2.52 16 27 C 0.20 3.93 8.56 134.30 1.15 5.08 16 28 N -0.45 -9.33 9.54 -182.08 -1.74 -11.07 16 29 C -0.18 -7.16 9.65 22.39 0.22 -6.95 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 31 H 0.12 4.93 5.64 -2.91 -0.02 4.92 16 32 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.07 1.95 8.08 -2.38 -0.02 1.93 16 35 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.42 9.56 7.77 -92.71 -0.72 8.84 16 37 H 0.19 1.93 7.61 -2.91 -0.02 1.91 16 38 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.11 4.42 8.06 -2.92 -0.02 4.40 16 Total: -1.00 -75.19 351.75 0.99 -74.20 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -1.53 Total: 24.72 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 5.36 Total: -16.95 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.59 Total: -97.29 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.28 Total: -28.64 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.19 0.99 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633474133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.726 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds