Wall clock time and date at job start Tue Mar 31 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.47108 * 179.97438 * 18 17 15 20 20 N 1.31256 * 126.19862 * 90.02475 * 19 18 17 21 21 N 1.28805 * 110.03663 * 179.97438 * 20 19 18 22 22 C 1.31388 * 109.26433 * 359.97438 * 21 20 19 23 23 C 1.46887 * 134.27155 * 179.97438 * 22 21 20 24 24 O 1.21748 * 120.78223 * 359.97438 * 23 22 21 25 25 N 1.35146 * 118.43134 * 180.02562 * 23 22 21 26 26 H 0.97007 * 119.84984 * 180.02562 * 25 23 22 27 27 C 1.38145 * 120.29278 * 359.97438 * 25 23 22 28 28 C 1.32815 * 121.84312 * 0.04680 * 27 25 23 29 29 N 1.34476 * 126.19985 * 269.71221 * 19 18 17 30 30 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 32 32 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 33 33 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 35 35 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 37 37 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 38 38 H 1.08004 * 119.08156 * 180.02562 * 27 25 23 39 39 H 1.07996 * 119.45760 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9585 -5.6610 -3.7462 20 7 5.4705 -6.7930 -3.3226 21 7 6.3925 -7.1897 -4.1299 22 6 6.5111 -6.3243 -5.1114 23 6 7.3683 -6.2340 -6.3008 24 8 8.1954 -7.0949 -6.5395 25 7 7.2179 -5.1721 -7.1232 26 1 7.7729 -5.0920 -7.9147 27 6 6.2765 -4.2009 -6.8421 28 6 5.4959 -4.2711 -5.7699 29 7 5.5904 -5.3302 -4.8862 30 1 -0.4850 0.8400 -0.0004 31 1 3.3594 0.3863 1.6623 32 1 5.7821 0.3556 2.0405 33 1 7.2121 -1.2443 0.8416 34 1 6.2399 -2.8385 -0.7537 35 1 5.4035 -3.8783 -2.0213 36 1 3.1964 -5.5609 -2.5460 37 1 3.2877 -4.3366 -3.8349 38 1 6.1726 -3.3609 -7.5130 39 1 4.7730 -3.4899 -5.5872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635052573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:34 Heat of formation + Delta-G solvation = 69.238703 kcal Electronic energy + Delta-G solvation = -27939.438931 eV Core-core repulsion = 23849.300137 eV Total energy + Delta-G solvation = -4090.138794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.04934 -40.56929 -39.21122 -37.91292 -37.18322 -35.08123 -34.49728 -33.67285 -31.64140 -30.58385 -30.55000 -30.05950 -27.08084 -25.42810 -25.23751 -24.37706 -22.50988 -21.68544 -21.00144 -19.80258 -19.47537 -19.21305 -18.32386 -17.69731 -17.28458 -16.93824 -16.16417 -15.71638 -15.45267 -15.08892 -14.81094 -14.60650 -14.47907 -14.18327 -14.09990 -13.64762 -13.21839 -13.18056 -12.86440 -12.63914 -12.51834 -12.11621 -12.03383 -11.72284 -11.57570 -11.21906 -11.02430 -10.97921 -10.79757 -10.53479 -10.31083 -9.90763 -9.89183 -9.34045 -8.82901 -8.74001 -8.61319 -7.91261 -7.68416 -6.98858 -4.57802 0.36715 0.83441 1.77160 1.95429 1.99456 2.14024 2.52659 2.76970 3.02262 3.10011 3.20836 3.35919 3.57793 3.82442 3.84074 3.89036 4.10004 4.25565 4.43464 4.51774 4.87930 5.05638 5.29559 5.39463 5.45033 5.57829 5.70317 5.78894 5.85504 5.97073 5.98750 6.27560 6.40613 6.42418 6.68699 6.73707 7.00709 7.10018 7.13227 7.30461 7.50272 7.65401 7.92326 8.05867 8.07367 8.38169 8.54182 8.76849 9.14367 9.97685 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.002800 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.402493 B = 9996.948762 C =10224.775745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.243 1.243 6 H -0.288 1.288 7 C -0.401 4.401 8 H 0.125 0.875 9 C 0.118 3.882 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.253 4.253 13 C -0.039 4.039 14 C -0.251 4.251 15 C 0.567 3.433 16 O -0.522 6.522 17 N -0.746 5.746 18 C 0.212 3.788 19 C 0.196 3.804 20 N -0.256 5.256 21 N -0.204 5.204 22 C 0.101 3.899 23 C 0.600 3.400 24 O -0.482 6.482 25 N -0.638 5.638 26 H 0.430 0.570 27 C 0.091 3.909 28 C -0.024 4.024 29 N -0.382 5.382 30 H 0.288 0.712 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.395 0.605 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.192 0.808 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -1.481 -14.449 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.427 4.427 8 H 0.143 0.857 9 C 0.113 3.887 10 C -0.243 4.243 11 C -0.083 4.083 12 C -0.272 4.272 13 C -0.058 4.058 14 C -0.256 4.256 15 C 0.361 3.639 16 O -0.399 6.399 17 N -0.404 5.404 18 C 0.085 3.915 19 C -0.069 4.069 20 N -0.100 5.100 21 N -0.051 5.051 22 C -0.161 4.161 23 C 0.385 3.615 24 O -0.351 6.351 25 N -0.282 5.282 26 H 0.270 0.730 27 C -0.030 4.030 28 C -0.143 4.143 29 N -0.068 5.068 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.209 0.791 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.494 -3.228 -13.696 16.975 hybrid contribution 0.759 2.027 -0.999 2.384 sum 10.253 -1.200 -14.695 17.959 Atomic orbital electron populations 1.69565 1.08222 1.30458 1.33062 1.26396 0.94870 1.01678 0.91272 0.86392 0.81258 0.79760 0.79322 1.19363 1.16565 1.21572 1.20214 0.90813 0.96634 1.35071 0.85733 1.17523 0.93111 0.89408 0.88632 1.21166 0.94699 1.04912 1.03513 1.20756 0.93736 0.96626 0.97145 1.20296 0.97962 1.03049 1.05925 1.20764 0.93526 0.95852 0.95675 1.19273 0.92699 1.07116 1.06510 1.18352 0.86081 0.79705 0.79774 1.90754 1.13982 1.68538 1.66624 1.46023 1.10415 1.39810 1.44159 1.19462 0.88708 0.90875 0.92423 1.25058 0.99572 0.96212 0.86051 1.74925 1.06264 1.08320 1.20489 1.74684 1.11046 1.20415 0.98924 1.24594 0.98180 0.91614 1.01757 1.16460 0.82334 0.81889 0.80773 1.91002 1.33804 1.38097 1.72187 1.43398 1.36670 1.20941 1.27200 0.72979 1.21445 0.90003 0.94109 0.97446 1.21161 1.06856 0.94180 0.92074 1.43649 1.26450 1.18104 1.18603 0.90163 0.87698 0.88492 0.88501 0.88897 0.77050 0.87517 0.89341 0.79132 0.79513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.52 13.92 55.56 0.77 -19.75 16 2 C 0.08 2.00 5.47 -17.30 -0.09 1.91 16 3 Si 0.91 19.63 24.51 -169.99 -4.17 15.47 16 4 H -0.27 -5.57 6.76 56.52 0.38 -5.19 16 5 H -0.24 -5.34 6.72 56.52 0.38 -4.96 16 6 H -0.29 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.40 -10.66 8.31 -37.81 -0.31 -10.97 16 8 H 0.13 3.67 5.96 -52.49 -0.31 3.36 16 9 C 0.12 2.88 5.03 -106.54 -0.54 2.34 16 10 C -0.22 -5.06 7.00 -38.88 -0.27 -5.33 16 11 C -0.06 -1.28 10.01 -39.60 -0.40 -1.67 16 12 C -0.25 -4.78 10.03 -39.37 -0.39 -5.17 16 13 C -0.04 -0.75 9.52 -39.22 -0.37 -1.12 16 14 C -0.25 -5.51 5.92 -104.37 -0.62 -6.13 16 15 C 0.57 11.69 7.72 -12.51 -0.10 11.60 16 16 O -0.52 -12.58 13.54 5.27 0.07 -12.51 16 17 N -0.75 -11.60 5.50 -62.56 -0.34 -11.95 16 18 C 0.21 2.79 6.20 -5.19 -0.03 2.76 16 19 C 0.20 2.53 7.48 -155.29 -1.16 1.37 16 20 N -0.26 -3.99 12.23 32.73 0.40 -3.59 16 21 N -0.20 -3.25 12.28 32.34 0.40 -2.85 16 22 C 0.10 1.31 8.12 -154.30 -1.25 0.05 16 23 C 0.60 6.48 7.97 -12.59 -0.10 6.38 16 24 O -0.48 -6.71 17.99 5.15 0.09 -6.62 16 25 N -0.64 -3.43 5.38 -13.15 -0.07 -3.50 16 26 H 0.43 1.00 8.92 -40.82 -0.36 0.64 16 27 C 0.09 0.32 11.09 -16.57 -0.18 0.13 16 28 C -0.02 -0.15 10.87 -16.51 -0.18 -0.33 16 29 N -0.38 -4.11 2.97 -58.39 -0.17 -4.29 16 30 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 31 H 0.11 2.34 5.00 -52.49 -0.26 2.08 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.09 1.46 6.42 -52.49 -0.34 1.13 16 35 H 0.39 5.58 6.51 -40.82 -0.27 5.31 16 36 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.19 -0.25 8.06 -52.48 -0.42 -0.67 16 39 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -34.61 339.31 -7.17 -41.78 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.25 Total: 6.87 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -6.01 Total: -4.19 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.98 Total: -45.92 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.16 Total: -19.13 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.17 Total: 15.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.61 -7.17 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635052573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.023 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds