Wall clock time and date at job start Tue Mar 31 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.47108 * 179.97438 * 18 17 15 20 20 N 1.31256 * 126.19862 * 90.02475 * 19 18 17 21 21 N 1.28805 * 110.03663 * 179.97438 * 20 19 18 22 22 C 1.31388 * 109.26433 * 359.97438 * 21 20 19 23 23 C 1.46887 * 134.27155 * 179.97438 * 22 21 20 24 24 O 1.21748 * 120.78223 * 359.97438 * 23 22 21 25 25 N 1.35146 * 118.43134 * 180.02562 * 23 22 21 26 26 H 0.97007 * 119.84984 * 180.02562 * 25 23 22 27 27 C 1.38145 * 120.29278 * 359.97438 * 25 23 22 28 28 C 1.32815 * 121.84312 * 0.04680 * 27 25 23 29 29 N 1.34476 * 126.19985 * 269.71221 * 19 18 17 30 30 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 32 32 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 33 33 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 35 35 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 37 37 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 38 38 H 1.08004 * 119.08156 * 180.02562 * 27 25 23 39 39 H 1.07996 * 119.45760 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9585 -5.6610 -3.7462 20 7 5.4705 -6.7930 -3.3226 21 7 6.3925 -7.1897 -4.1299 22 6 6.5111 -6.3243 -5.1114 23 6 7.3683 -6.2340 -6.3008 24 8 8.1954 -7.0949 -6.5395 25 7 7.2179 -5.1721 -7.1232 26 1 7.7729 -5.0920 -7.9147 27 6 6.2765 -4.2009 -6.8421 28 6 5.4959 -4.2711 -5.7699 29 7 5.5904 -5.3302 -4.8862 30 1 -0.4850 0.8400 -0.0004 31 1 3.3594 0.3863 1.6623 32 1 5.7821 0.3556 2.0405 33 1 7.2121 -1.2443 0.8416 34 1 6.2399 -2.8385 -0.7537 35 1 5.4035 -3.8783 -2.0213 36 1 3.1964 -5.5609 -2.5460 37 1 3.2877 -4.3366 -3.8349 38 1 6.1726 -3.3609 -7.5130 39 1 4.7730 -3.4899 -5.5872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635052573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:33 Heat of formation + Delta-G solvation = 42.811269 kcal Electronic energy + Delta-G solvation = -27940.584910 eV Core-core repulsion = 23849.300137 eV Total energy + Delta-G solvation = -4091.284773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.97187 -41.35766 -40.82413 -38.82152 -38.68165 -36.32170 -35.61097 -35.32113 -32.90032 -32.27731 -31.58286 -31.15108 -28.31751 -26.99009 -26.25023 -25.14093 -24.06901 -22.97623 -22.33841 -21.31078 -20.24872 -20.03735 -19.45733 -19.00887 -18.43727 -18.19385 -17.17833 -16.99101 -16.94576 -16.07556 -16.03993 -15.99315 -15.80826 -15.31299 -15.28895 -14.96238 -14.51088 -14.22393 -14.18692 -13.98679 -13.91982 -13.69644 -13.21875 -13.10184 -12.67673 -12.53818 -12.50501 -12.19508 -12.13801 -12.03113 -11.93743 -11.59373 -11.07516 -11.00539 -10.34205 -10.16947 -9.52985 -9.41553 -9.37474 -8.79633 -6.46311 -0.44419 0.10963 0.33819 0.85018 0.94013 1.20775 1.28731 1.28840 1.40667 1.50212 1.97377 2.12932 2.23353 2.35360 2.66286 2.73120 2.89133 3.25551 3.50084 3.56808 3.97484 4.07461 4.22309 4.25026 4.40044 4.43332 4.47135 4.56591 4.72394 4.81874 4.84129 5.01786 5.17050 5.31080 5.34968 5.41124 5.47183 5.68577 5.71693 5.87153 5.97070 6.27049 6.44228 6.48272 6.58651 6.78887 6.87165 7.07692 7.54088 8.23969 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.002800 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.402493 B = 9996.948762 C =10224.775745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.039 3.961 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.246 1.246 6 H -0.280 1.280 7 C -0.446 4.446 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.246 4.246 11 C -0.060 4.060 12 C -0.233 4.233 13 C -0.038 4.038 14 C -0.264 4.264 15 C 0.567 3.433 16 O -0.564 6.564 17 N -0.724 5.724 18 C 0.219 3.781 19 C 0.189 3.811 20 N -0.286 5.286 21 N -0.252 5.252 22 C 0.092 3.908 23 C 0.597 3.403 24 O -0.522 6.522 25 N -0.611 5.611 26 H 0.450 0.550 27 C 0.134 3.866 28 C -0.069 4.069 29 N -0.363 5.363 30 H 0.294 0.706 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.405 0.595 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.255 0.745 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.950 0.791 -16.318 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.169 1.169 6 H -0.206 1.206 7 C -0.475 4.475 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.265 4.265 11 C -0.079 4.079 12 C -0.252 4.252 13 C -0.057 4.057 14 C -0.269 4.269 15 C 0.360 3.640 16 O -0.444 6.444 17 N -0.381 5.381 18 C 0.093 3.907 19 C -0.077 4.077 20 N -0.131 5.131 21 N -0.099 5.099 22 C -0.171 4.171 23 C 0.383 3.617 24 O -0.394 6.394 25 N -0.256 5.256 26 H 0.294 0.706 27 C 0.013 3.987 28 C -0.186 4.186 29 N -0.048 5.048 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.271 0.729 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 13.415 -0.936 -15.613 20.606 hybrid contribution -0.120 1.202 -0.567 1.334 sum 13.295 0.265 -16.179 20.943 Atomic orbital electron populations 1.69622 1.09520 1.31432 1.36588 1.27090 0.95481 1.04376 0.90660 0.85504 0.79634 0.76073 0.79978 1.17859 1.16901 1.20637 1.19963 0.92272 0.95669 1.39602 0.90511 1.17768 0.92571 0.90713 0.89003 1.21265 0.96272 1.05202 1.03774 1.21226 0.92580 0.96989 0.97075 1.20895 1.00001 1.00834 1.03470 1.21150 0.92383 0.96462 0.95709 1.19668 0.94196 1.06581 1.06415 1.18335 0.85718 0.80015 0.79954 1.90764 1.15941 1.69901 1.67767 1.45689 1.10427 1.38716 1.43261 1.19421 0.88744 0.90292 0.92232 1.24641 0.99931 0.95945 0.87141 1.74793 1.06956 1.09724 1.21650 1.74564 1.12382 1.22403 1.00581 1.24951 0.98653 0.91581 1.01915 1.16462 0.81693 0.82822 0.80744 1.90985 1.35418 1.39975 1.73055 1.43376 1.36434 1.19321 1.26444 0.70604 1.22456 0.86395 0.93553 0.96269 1.21915 1.09581 0.94207 0.92885 1.43743 1.24709 1.18312 1.18020 0.89593 0.88012 0.84772 0.84310 0.85136 0.75839 0.88692 0.87469 0.72907 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.97 13.92 21.88 0.30 -46.66 16 2 C 0.04 2.06 5.47 85.37 0.47 2.53 16 3 Si 0.97 41.09 24.51 68.60 1.68 42.77 16 4 H -0.25 -10.04 6.76 99.48 0.67 -9.36 16 5 H -0.25 -10.36 6.72 99.48 0.67 -9.69 16 6 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.45 -25.31 8.31 23.41 0.19 -25.11 16 8 H 0.08 4.97 5.96 -2.91 -0.02 4.96 16 9 C 0.10 5.12 5.03 -21.11 -0.11 5.02 16 10 C -0.25 -10.78 7.00 22.72 0.16 -10.63 16 11 C -0.06 -2.15 10.01 22.26 0.22 -1.93 16 12 C -0.23 -7.54 10.03 22.41 0.22 -7.31 16 13 C -0.04 -1.32 9.52 22.50 0.21 -1.10 16 14 C -0.26 -11.39 5.92 -19.70 -0.12 -11.51 16 15 C 0.57 23.65 7.72 86.67 0.67 24.32 16 16 O -0.56 -28.71 13.54 -4.05 -0.05 -28.77 16 17 N -0.72 -21.87 5.50 -470.08 -2.58 -24.45 16 18 C 0.22 5.74 6.20 85.63 0.53 6.27 16 19 C 0.19 4.81 7.48 138.09 1.03 5.84 16 20 N -0.29 -9.14 12.23 -50.37 -0.62 -9.76 16 21 N -0.25 -8.23 12.28 -51.59 -0.63 -8.86 16 22 C 0.09 2.33 8.12 135.97 1.10 3.43 16 23 C 0.60 11.86 7.97 86.45 0.69 12.55 16 24 O -0.52 -14.22 17.99 -4.50 -0.08 -14.30 16 25 N -0.61 -3.99 5.38 -313.51 -1.69 -5.68 16 26 H 0.45 -0.07 8.92 -92.70 -0.83 -0.89 16 27 C 0.13 0.18 11.09 82.52 0.92 1.09 16 28 C -0.07 -0.61 10.87 82.50 0.90 0.28 16 29 N -0.36 -7.21 2.97 -338.65 -1.01 -8.22 16 30 H 0.29 14.54 8.29 -92.71 -0.77 13.77 16 31 H 0.10 4.46 5.00 -2.91 -0.01 4.44 16 32 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.13 3.46 6.42 -2.91 -0.02 3.44 16 35 H 0.41 10.54 6.51 -92.71 -0.60 9.93 16 36 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.26 -2.75 8.06 -2.91 -0.02 -2.77 16 39 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -85.75 339.31 2.09 -83.66 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.33 Total: 16.54 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 7.10 Total: 3.73 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -6.22 Total: -103.63 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.14 Total: -43.07 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.68 Total: 42.77 kcal Total: -85.75 2.09 -83.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635052573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.472 kcal (2) G-P(sol) polarization free energy of solvation -85.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds