Wall clock time and date at job start Tue Mar 31 2020 22:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32709 * 118.97658 * 2 1 4 4 N 1.38635 * 121.34481 * 180.02562 * 3 2 1 5 5 N 1.28658 * 131.88256 * 180.31015 * 4 3 2 6 6 C 1.32286 * 110.93619 * 180.13718 * 5 4 3 7 7 C 1.47659 * 126.19533 * 179.80886 * 6 5 4 8 8 O 1.21577 * 120.00337 * 179.68763 * 7 6 5 9 9 N 1.34783 * 119.99996 * 359.68956 * 7 6 5 10 10 C 1.39383 * 119.99826 * 185.07860 * 9 7 6 11 11 C 1.38626 * 119.58005 * 185.36194 * 10 9 7 12 12 C 1.40799 * 118.79106 * 179.72720 * 11 10 9 13 13 C 1.41543 * 120.99141 * 180.23039 * 12 11 10 14 14 H 1.08004 * 120.00100 * 153.75704 * 13 12 11 15 15 C 1.40030 * 120.00483 * 333.76027 * 13 12 11 16 16 N 1.30751 * 119.99629 * 350.15903 * 15 13 12 17 17 Si 1.86799 * 120.00485 * 170.15713 * 15 13 12 18 18 H 1.48506 * 109.46837 * 89.99841 * 17 15 13 19 19 H 1.48498 * 109.47589 * 209.99952 * 17 15 13 20 20 H 1.48504 * 109.47092 * 329.99966 * 17 15 13 21 21 C 1.41174 * 118.01152 * 0.25355 * 12 11 10 22 22 C 1.37584 * 119.02119 * 0.02562 * 21 12 11 23 23 N 1.32089 * 121.11058 * 0.02562 * 22 21 12 24 24 C 1.40682 * 107.60666 * 359.54760 * 6 5 4 25 25 C 1.37306 * 118.90504 * 359.96494 * 4 3 2 26 26 C 1.46579 * 119.26874 * 0.02562 * 25 4 3 27 27 O 1.21756 * 120.78335 * 180.02562 * 26 25 4 28 28 N 1.35168 * 118.43454 * 0.02562 * 26 25 4 29 29 H 0.96996 * 120.00028 * 180.02562 * 28 26 25 30 30 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47037 * 300.01806 * 1 2 3 32 32 H 1.08999 * 109.47104 * 60.01409 * 1 2 3 33 33 H 1.08005 * 119.33042 * 0.02866 * 3 2 1 34 34 H 0.96995 * 119.99557 * 5.08412 * 9 7 6 35 35 H 1.08003 * 120.60162 * 0.02562 * 11 10 9 36 36 H 0.97005 * 119.99493 * 180.02562 * 16 15 13 37 37 H 1.08007 * 120.48891 * 180.02562 * 21 12 11 38 38 H 1.07994 * 119.44476 * 179.97438 * 22 21 12 39 39 H 1.08006 * 127.41375 * 180.24375 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1499 1.1610 0.0000 4 7 3.5351 1.2182 -0.0005 5 7 4.3537 2.2108 0.0046 6 6 5.6076 1.7893 -0.0015 7 6 6.8138 2.6411 -0.0024 8 8 7.9177 2.1317 -0.0026 9 7 6.6910 3.9833 -0.0029 10 6 7.8249 4.7868 -0.1106 11 6 7.7015 6.1630 0.0017 12 6 8.8585 6.9583 -0.1039 13 6 8.7870 8.3675 0.0085 14 1 9.6470 8.9266 0.3464 15 6 7.6012 9.0367 -0.3184 16 7 6.6276 8.3921 -0.9067 17 14 7.4102 10.8504 0.0859 18 1 7.8934 11.6659 -1.0572 19 1 5.9787 11.1530 0.3398 20 1 8.2068 11.1742 1.2967 21 6 10.0920 6.3084 -0.3257 22 6 10.1144 4.9366 -0.4294 23 7 9.0058 4.2261 -0.3255 24 6 5.5838 0.3827 -0.0010 25 6 4.2479 0.0447 -0.0003 26 6 3.5270 -1.2316 -0.0001 27 8 4.1314 -2.2886 0.0005 28 7 2.1756 -1.2075 -0.0007 29 1 1.6756 -2.0387 -0.0002 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3633 0.5136 -0.8901 33 1 1.5825 2.0799 0.0005 34 1 5.8136 4.3900 0.0717 35 1 6.7362 6.6164 0.1720 36 1 5.8063 8.8558 -1.1335 37 1 11.0045 6.8795 -0.4126 38 1 11.0541 4.4324 -0.5994 39 1 6.4304 -0.2879 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635568726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:58 Heat of formation + Delta-G solvation = 75.356761 kcal Electronic energy + Delta-G solvation = -27358.068694 eV Core-core repulsion = 23268.195199 eV Total energy + Delta-G solvation = -4089.873495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35650 -40.36899 -39.38529 -37.92121 -37.56398 -34.35386 -33.78300 -33.49583 -32.12438 -31.15782 -30.52356 -28.88816 -27.39558 -25.99059 -24.56883 -23.89237 -22.68867 -21.94367 -21.17643 -19.99314 -19.14724 -18.89677 -17.65033 -17.57290 -16.93872 -16.59861 -15.80467 -15.27298 -15.22564 -15.17072 -14.60424 -14.32450 -14.19613 -14.17963 -14.03236 -13.88900 -13.63494 -13.26568 -13.14018 -12.79278 -12.59914 -12.35702 -11.97502 -11.45084 -11.38863 -11.16620 -10.90703 -10.75166 -10.44154 -10.31754 -10.16208 -9.78125 -9.65437 -9.57697 -9.38553 -8.28538 -7.98528 -7.76287 -7.03753 -6.73858 -4.61770 0.50840 0.96321 1.82349 1.93057 2.21772 2.74001 2.81530 2.88061 3.02180 3.06798 3.24700 3.41870 3.71551 3.80738 3.86653 3.88405 4.07432 4.46315 4.70874 4.80311 4.85810 4.94923 5.02444 5.22062 5.26590 5.45301 5.68319 5.92356 5.97503 6.06365 6.16039 6.52253 6.58331 6.65978 6.80611 6.96311 7.13671 7.27053 7.37495 7.45945 7.53812 7.80179 7.95976 8.20072 8.40961 8.69076 8.76183 8.82794 9.67262 10.10749 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002532 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.286433 B =11057.715475 C =12735.636447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.117 3.883 3 C -0.008 4.008 4 N -0.196 5.196 5 N -0.233 5.233 6 C 0.003 3.997 7 C 0.589 3.411 8 O -0.466 6.466 9 N -0.641 5.641 10 C 0.334 3.666 11 C -0.234 4.234 12 C 0.141 3.859 13 C -0.453 4.453 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.794 5.794 17 Si 0.915 3.085 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.280 4.280 22 C 0.119 3.881 23 N -0.554 5.554 24 C -0.082 4.082 25 C -0.078 4.078 26 C 0.587 3.413 27 O -0.501 6.501 28 N -0.640 5.640 29 H 0.423 0.577 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.415 0.585 35 H 0.134 0.866 36 H 0.281 0.719 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.084 -12.349 1.661 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.013 3.987 3 C -0.126 4.126 4 N 0.020 4.980 5 N -0.071 5.071 6 C -0.153 4.153 7 C 0.371 3.629 8 O -0.333 6.333 9 N -0.287 5.287 10 C 0.110 3.890 11 C -0.259 4.259 12 C 0.133 3.867 13 C -0.485 4.485 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.420 5.420 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.304 4.304 22 C -0.036 4.036 23 N -0.273 5.273 24 C -0.111 4.111 25 C -0.200 4.200 26 C 0.376 3.624 27 O -0.374 6.374 28 N -0.283 5.283 29 H 0.262 0.738 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.251 0.749 35 H 0.152 0.848 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.678 -13.167 1.479 22.092 hybrid contribution -0.582 1.047 0.118 1.204 sum -18.259 -12.120 1.597 21.974 Atomic orbital electron populations 1.20904 0.86107 1.04739 1.05006 1.19741 0.95509 0.83699 0.99796 1.20536 0.78309 0.99503 1.14213 1.42970 1.05464 1.03533 1.46040 1.73715 0.99984 1.14610 1.18819 1.22320 0.90992 0.93572 1.08402 1.16798 0.85887 0.81818 0.78409 1.90905 1.24314 1.72821 1.45268 1.43206 1.09518 1.04980 1.70970 1.18147 0.85801 0.87414 0.97640 1.21675 1.01736 0.89546 1.12955 1.17589 0.89992 0.93420 0.85731 1.19572 0.98089 0.91414 1.39384 0.90026 1.25958 0.94938 1.01110 0.92336 1.69748 1.05233 1.38318 1.28713 0.86207 0.78334 0.81573 0.79996 1.19413 1.20076 1.18443 1.21931 0.98589 0.95056 1.14843 1.21755 0.94565 0.90893 0.96370 1.67165 0.97165 1.39676 1.23340 1.21799 0.94351 0.94287 1.00710 1.21696 0.93346 0.87120 1.17812 1.17025 0.81078 0.87739 0.76559 1.90965 1.66725 1.31160 1.48513 1.43539 1.06908 1.08893 1.68975 0.73784 0.90103 0.88774 0.88762 0.79746 0.74911 0.84816 0.90787 0.87877 0.85723 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.09 10.06 36.01 0.36 0.27 16 2 C 0.12 0.61 6.76 -81.69 -0.55 0.06 16 3 C -0.01 -0.06 10.67 -16.36 -0.17 -0.24 16 4 N -0.20 -2.45 3.65 -9.38 -0.03 -2.49 16 5 N -0.23 -3.53 11.81 33.32 0.39 -3.13 16 6 C 0.00 0.05 7.09 -82.90 -0.59 -0.54 16 7 C 0.59 12.18 7.77 -12.41 -0.10 12.08 16 8 O -0.47 -11.09 15.20 5.30 0.08 -11.01 16 9 N -0.64 -13.54 5.38 -12.40 -0.07 -13.60 16 10 C 0.33 8.31 7.40 -154.77 -1.15 7.16 16 11 C -0.23 -6.00 8.61 -38.47 -0.33 -6.33 16 12 C 0.14 3.72 5.60 -106.56 -0.60 3.12 16 13 C -0.45 -11.63 9.14 -37.65 -0.34 -11.97 16 14 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 15 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 16 N -0.79 -19.55 10.70 55.55 0.59 -18.96 16 17 Si 0.91 17.93 29.57 -169.99 -5.03 12.91 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 C -0.28 -6.89 9.90 -38.71 -0.38 -7.27 16 22 C 0.12 2.86 11.15 -17.68 -0.20 2.67 16 23 N -0.55 -14.33 7.89 -12.54 -0.10 -14.43 16 24 C -0.08 -1.26 10.86 -38.82 -0.42 -1.69 16 25 C -0.08 -1.05 6.97 -82.21 -0.57 -1.63 16 26 C 0.59 6.89 7.96 -12.72 -0.10 6.79 16 27 O -0.50 -7.30 17.99 5.14 0.09 -7.21 16 28 N -0.64 -4.43 5.37 -9.57 -0.05 -4.48 16 29 H 0.42 1.69 8.64 -40.82 -0.35 1.34 16 30 H 0.08 -0.03 7.89 -51.93 -0.41 -0.44 16 31 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.19 0.91 8.03 -52.48 -0.42 0.49 16 34 H 0.41 7.69 8.41 -40.82 -0.34 7.34 16 35 H 0.13 3.42 6.11 -52.48 -0.32 3.10 16 36 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 37 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 38 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 39 H 0.18 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -34.98 349.82 -7.59 -42.57 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.51 Total: 10.37 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -5.24 Total: 4.20 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.74 Total: -57.10 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.98 -7.59 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635568726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.922 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds