Wall clock time and date at job start Tue Mar 31 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32708 * 118.97986 * 2 1 4 4 N 1.38633 * 121.34898 * 179.97438 * 3 2 1 5 5 N 1.28649 * 131.88397 * 180.29955 * 4 3 2 6 6 C 1.32290 * 110.93994 * 180.14307 * 5 4 3 7 7 C 1.47655 * 126.19966 * 179.84525 * 6 5 4 8 8 O 1.21571 * 119.99824 * 179.68890 * 7 6 5 9 9 N 1.34774 * 119.99769 * 359.68671 * 7 6 5 10 10 C 1.39174 * 119.99692 * 185.59910 * 9 7 6 11 11 C 1.39701 * 119.57951 * 18.97469 * 10 9 7 12 12 C 1.38643 * 119.49431 * 180.02562 * 11 10 9 13 13 C 1.38350 * 118.67248 * 359.97438 * 12 11 10 14 14 C 1.40577 * 119.13476 * 0.02562 * 13 12 11 15 15 C 1.41333 * 119.78458 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00146 * 7.19617 * 15 14 13 17 17 C 1.40023 * 119.99876 * 187.19263 * 15 14 13 18 18 N 1.30753 * 120.00230 * 7.23292 * 17 15 14 19 19 Si 1.86796 * 120.00322 * 187.23311 * 17 15 14 20 20 H 1.48508 * 109.47421 * 265.01166 * 19 17 15 21 21 H 1.48503 * 109.47137 * 25.00699 * 19 17 15 22 22 H 1.48499 * 109.47369 * 145.01079 * 19 17 15 23 23 N 1.31925 * 119.57670 * 199.24737 * 10 9 7 24 24 C 1.40689 * 107.60129 * 359.58132 * 6 5 4 25 25 C 1.37304 * 118.90553 * 359.97438 * 4 3 2 26 26 C 1.46585 * 119.26476 * 0.02562 * 25 4 3 27 27 O 1.21761 * 120.78141 * 180.02562 * 26 25 4 28 28 N 1.35159 * 118.43705 * 0.02562 * 26 25 4 29 29 H 0.96998 * 120.00365 * 180.02562 * 28 26 25 30 30 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 300.01989 * 1 2 3 32 32 H 1.08998 * 109.47455 * 60.01479 * 1 2 3 33 33 H 1.08005 * 119.32971 * 0.02562 * 3 2 1 34 34 H 0.96997 * 119.99852 * 5.60155 * 9 7 6 35 35 H 1.07998 * 120.24646 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.66243 * 179.97438 * 12 11 10 37 37 H 1.08006 * 120.43156 * 180.02562 * 13 12 11 38 38 H 0.97000 * 120.00258 * 180.02562 * 18 17 15 39 39 H 1.08009 * 127.41093 * 180.24043 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1500 1.1609 0.0000 4 7 3.5351 1.2182 0.0005 5 7 4.3537 2.2107 0.0056 6 6 5.6077 1.7893 0.0007 7 6 6.8138 2.6410 0.0010 8 8 7.9177 2.1315 0.0017 9 7 6.6910 3.9831 0.0003 10 6 7.8223 4.7853 -0.1170 11 6 9.0046 4.2403 -0.6236 12 6 10.1306 5.0408 -0.7392 13 6 10.0470 6.3648 -0.3467 14 6 8.8284 6.8542 0.1553 15 6 8.7277 8.2043 0.5609 16 1 9.5456 8.8855 0.3780 17 6 7.5676 8.6587 1.1997 18 7 6.6373 7.8085 1.5482 19 14 7.3486 10.4796 1.5542 20 1 7.7995 10.7722 2.9386 21 1 8.1569 11.2718 0.5927 22 1 5.9156 10.8427 1.4132 23 7 7.7659 6.0493 0.2566 24 6 5.5838 0.3826 0.0012 25 6 4.2479 0.0447 0.0016 26 6 3.5270 -1.2316 0.0016 27 8 4.1313 -2.2886 0.0030 28 7 2.1756 -1.2075 0.0000 29 1 1.6756 -2.0387 0.0003 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3634 0.5136 -0.8901 33 1 1.5826 2.0799 0.0004 34 1 5.8143 4.3899 0.0817 35 1 9.0414 3.2030 -0.9221 36 1 11.0547 4.6389 -1.1280 37 1 10.9066 7.0140 -0.4248 38 1 5.8334 8.1234 1.9904 39 1 6.4305 -0.2880 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636657402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:00 Heat of formation + Delta-G solvation = 83.612674 kcal Electronic energy + Delta-G solvation = -27468.127724 eV Core-core repulsion = 23378.612232 eV Total energy + Delta-G solvation = -4089.515492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.39848 -40.42342 -39.58144 -37.90540 -37.56394 -34.33850 -33.64794 -33.21613 -32.14168 -31.19982 -30.40532 -29.36586 -27.59843 -25.55456 -24.59324 -23.95637 -22.73953 -21.62752 -21.32700 -20.08446 -19.21390 -18.90724 -17.74986 -17.30305 -16.97278 -16.79021 -16.09354 -15.33036 -15.26020 -14.94586 -14.77687 -14.53875 -14.29657 -14.20953 -14.04865 -13.84211 -13.47432 -13.28747 -13.15784 -12.83387 -12.35983 -12.00933 -11.93021 -11.42480 -11.27566 -11.11825 -10.92592 -10.77467 -10.64243 -10.48615 -10.15988 -9.87252 -9.62204 -9.28710 -9.09687 -8.31748 -8.05736 -7.66630 -7.10384 -6.45760 -4.48383 0.48109 0.93225 1.73081 1.89525 2.19787 2.74643 2.85478 2.97517 3.09895 3.13592 3.24472 3.35231 3.65888 3.69891 3.85166 3.96214 4.05880 4.44692 4.78564 4.80037 4.82989 4.93611 5.01257 5.21223 5.24000 5.42147 5.90775 5.91549 6.01338 6.10280 6.18366 6.41674 6.50122 6.76630 6.78984 6.83664 7.14800 7.24818 7.44470 7.47108 7.56046 7.86194 7.90609 8.11645 8.28934 8.58915 8.71846 8.96224 10.03424 10.31911 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002617 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.236483 B =10696.392933 C =12344.869615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.118 3.882 3 C -0.008 4.008 4 N -0.194 5.194 5 N -0.227 5.227 6 C 0.002 3.998 7 C 0.603 3.397 8 O -0.505 6.505 9 N -0.628 5.628 10 C 0.357 3.643 11 C -0.311 4.311 12 C -0.048 4.048 13 C -0.286 4.286 14 C 0.281 3.719 15 C -0.436 4.436 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.723 5.723 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.276 1.276 23 N -0.507 5.507 24 C -0.080 4.080 25 C -0.077 4.077 26 C 0.587 3.413 27 O -0.501 6.501 28 N -0.640 5.640 29 H 0.423 0.577 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.414 0.586 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.272 0.728 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -13.637 -2.196 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 C -0.126 4.126 4 N 0.022 4.978 5 N -0.066 5.066 6 C -0.154 4.154 7 C 0.386 3.614 8 O -0.378 6.378 9 N -0.271 5.271 10 C 0.122 3.878 11 C -0.336 4.336 12 C -0.073 4.073 13 C -0.309 4.309 14 C 0.154 3.846 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.152 4.152 18 N -0.345 5.345 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.185 1.185 22 H -0.201 1.201 23 N -0.225 5.225 24 C -0.110 4.110 25 C -0.200 4.200 26 C 0.376 3.624 27 O -0.373 6.373 28 N -0.283 5.283 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.250 0.750 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.845 -13.185 -1.758 22.257 hybrid contribution 0.293 -0.253 -0.012 0.388 sum -17.552 -13.438 -1.770 22.176 Atomic orbital electron populations 1.20908 0.86064 1.04760 1.05052 1.19750 0.95533 0.83668 0.99644 1.20550 0.78242 0.99559 1.14250 1.42974 1.05522 1.03503 1.45815 1.73746 0.99927 1.14531 1.18371 1.22026 0.90819 0.93385 1.09120 1.16560 0.85938 0.81386 0.77507 1.90751 1.24506 1.73694 1.48806 1.42955 1.10629 1.04665 1.68893 1.18403 0.84973 0.90233 0.94178 1.21589 0.93990 1.02082 1.15933 1.20811 0.96512 0.93583 0.96387 1.21730 0.99154 0.95908 1.14120 1.18168 0.85611 0.92364 0.88434 1.19544 1.01243 0.93637 1.32393 0.89605 1.26026 0.95416 0.99484 0.94248 1.70066 1.05262 1.35251 1.23912 0.86332 0.78396 0.82682 0.79483 1.19603 1.18482 1.20137 1.67976 1.31475 1.01406 1.21664 1.21782 0.94411 0.94124 1.00645 1.21704 0.93322 0.87153 1.17776 1.17013 0.81089 0.87714 0.76568 1.90967 1.66726 1.31137 1.48505 1.43540 1.06904 1.08916 1.68933 0.73748 0.90083 0.88725 0.88737 0.79678 0.74980 0.85099 0.88159 0.88121 0.91675 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.09 10.06 36.01 0.36 0.27 16 2 C 0.12 0.61 6.76 -81.69 -0.55 0.06 16 3 C -0.01 -0.07 10.67 -16.36 -0.17 -0.24 16 4 N -0.19 -2.41 3.65 -9.38 -0.03 -2.44 16 5 N -0.23 -3.45 11.81 33.32 0.39 -3.06 16 6 C 0.00 0.03 7.09 -82.90 -0.59 -0.56 16 7 C 0.60 12.08 7.66 -12.42 -0.10 11.98 16 8 O -0.50 -11.17 13.71 5.30 0.07 -11.10 16 9 N -0.63 -13.58 5.40 -12.31 -0.07 -13.65 16 10 C 0.36 9.07 7.51 -155.04 -1.16 7.91 16 11 C -0.31 -7.71 8.83 -38.89 -0.34 -8.05 16 12 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 13 C -0.29 -7.24 9.83 -38.66 -0.38 -7.62 16 14 C 0.28 7.79 6.52 -85.00 -0.55 7.24 16 15 C -0.44 -11.69 9.13 -37.74 -0.34 -12.03 16 16 H 0.09 2.15 7.86 -52.49 -0.41 1.73 16 17 C 0.07 1.85 5.47 -17.34 -0.09 1.76 16 18 N -0.72 -19.04 11.56 55.55 0.64 -18.39 16 19 Si 0.91 18.51 29.57 -169.99 -5.03 13.48 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 N -0.51 -14.06 7.99 -10.27 -0.08 -14.14 16 24 C -0.08 -1.19 10.86 -38.82 -0.42 -1.61 16 25 C -0.08 -1.03 6.97 -82.21 -0.57 -1.60 16 26 C 0.59 6.73 7.96 -12.72 -0.10 6.62 16 27 O -0.50 -7.13 17.99 5.13 0.09 -7.04 16 28 N -0.64 -4.30 5.37 -9.57 -0.05 -4.36 16 29 H 0.42 1.61 8.64 -40.82 -0.35 1.26 16 30 H 0.08 -0.04 7.89 -51.93 -0.41 -0.45 16 31 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.19 0.93 8.03 -52.48 -0.42 0.51 16 34 H 0.41 8.40 8.54 -40.82 -0.35 8.05 16 35 H 0.13 3.17 5.33 -52.50 -0.28 2.89 16 36 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 39 H 0.18 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -35.33 348.88 -7.70 -43.03 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.47 Total: 9.83 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -5.42 Total: 2.58 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.80 Total: -56.04 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.33 -7.70 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636657402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.642 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds